View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21036_low_11 (Length: 484)

Name: NF21036_low_11
Description: NF21036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21036_low_11
NF21036_low_11
[»] chr4 (2 HSPs)
chr4 (4-466)||(9925478-9925956)
chr4 (89-152)||(10390067-10390130)
[»] chr8 (4 HSPs)
chr8 (67-217)||(12268385-12268536)
chr8 (119-217)||(7754720-7754819)
chr8 (13-72)||(7754869-7754928)
chr8 (13-63)||(12268553-12268603)
[»] chr7 (4 HSPs)
chr7 (120-175)||(28106120-28106176)
chr7 (4-72)||(44002542-44002612)
chr7 (14-71)||(3799401-3799458)
chr7 (154-186)||(36438145-36438177)
[»] chr5 (3 HSPs)
chr5 (108-215)||(4177647-4177755)
chr5 (4-71)||(17463218-17463285)
chr5 (133-177)||(13288915-13288959)
[»] chr1 (4 HSPs)
chr1 (13-72)||(8115612-8115671)
chr1 (102-179)||(8115716-8115794)
chr1 (108-158)||(50371627-50371677)
chr1 (4-69)||(50371509-50371574)
[»] chr2 (1 HSPs)
chr2 (13-72)||(26261664-26261723)


Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 4 - 466
Target Start/End: Original strand, 9925478 - 9925956
Alignment:
Q  4 atgtcgaagaatataattgttaattttgttatatattgaaagttgaatgttgacaaatttaggtatatg-------------cctcctaaatttttaggt 90  Q
    |||| ||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||             ||||||||||||||||||    
T  9925478 atgttgaaaaatataattgttaattttgttatatgttgaacgttgaatgttgacaaatttaggtatatgtcgttaatatatgcctcctaaatttttaggt 9925577  T
Q  91 tctgcatttatttcagccttcctttatacctcctaaattgcgtcttaggattagaaagttttaaaa---aattgcatttttattttactgagacctatta 187  Q
    |||  |||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  9925578 tctaaatttttttcagtcttcctctatacctcctaaattgcgtcttaggattagaaagttttaaaaaaaaattgcatttttattttactgagacctatta 9925677  T
Q  188 tactttaagagtcgagccttttatttcataagaatcgcgttgatttatgttaagacttacctccattaaaaaaggatgatatttgtcacaacaaatacct 287  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||    
T  9925678 tactttaagagttgagccttttatttcataagaaccgcgttgatttatgttaagactttcctccattaaaaaaggatgttatgtgtcacaacaaatacct 9925777  T
Q  288 tataaatttcctcaaaaataagaaaaatctcactgatttgcgtatccaa-aaattgctcgacaaagataaatcattgttaagggtggtagatattggtat 386  Q
    || ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||    
T  9925778 tacaaatttcatcaaaaataagaaaaatctcactgatttgcgtatccaacaaattgctcgacaaagataaatcattgtt-agggttgtagatattggaat 9925876  T
Q  387 ttacatggttagaagaaaaaatatccaaaacaaattaattgttatcttttatgttatattccagagtatagcttcacctt 466  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  9925877 ttacatggttagaagtaaaaatatccaaaacaaattaactgttatcttttatgttatattccagagtatagtttcacctt 9925956  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 152
Target Start/End: Original strand, 10390067 - 10390130
Alignment:
Q  89 gttctgcatttatttcagccttcctttatacctcctaaattgcgtcttaggattagaaagtttt 152  Q
    |||||||||||  || || |||||| ||| ||||||||||||| ||||||||||||||| ||||    
T  10390067 gttctgcattttattaagtcttcctctatgcctcctaaattgcctcttaggattagaaattttt 10390130  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 67 - 217
Target Start/End: Complemental strand, 12268536 - 12268385
Alignment:
Q  67 tatatgcctcctaaatttttaggttctgcatttatttc-agccttcctttatacctcctaaattgcgtcttaggattagaaagttttaaaaaattgcatt 165  Q
    ||||||||||||||||||| | |||||  |||| |||  || |||||||||| |||| |||||||| ||||||||||| |||||||||||||||||||||    
T  12268536 tatatgcctcctaaatttt-atgttctaaatttttttttagtcttcctttatgcctcttaaattgcctcttaggattaaaaagttttaaaaaattgcatt 12268438  T
Q  166 tttattttactga-gacctattatactttaagagtcgagccttttatttcata 217  Q
    |||| |||||||| |  ||||| |||| | ||||||||||||  |||||||||    
T  12268437 tttaatttactgagggtctattttactatgagagtcgagcctcctatttcata 12268385  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 119 - 217
Target Start/End: Complemental strand, 7754819 - 7754720
Alignment:
Q  119 cctcctaaattgcgtcttaggattagaaagttttaaaaaattgcatttttattttact-gagacctattatactttaagagtcgagccttttatttcata 217  Q
    |||| |||||||| ||||||||||||||||||| |||||||||| |||||||||||||  ||| |||||||| | | |||||||||| |  |||||||||    
T  7754819 cctcttaaattgcctcttaggattagaaagtttaaaaaaattgcgtttttattttactaaagatctattatattattagagtcgagcatcctatttcata 7754720  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 7754928 - 7754869
Alignment:
Q  13 aatataattgttaattttgttatatattgaaagttgaatgttgacaaatttaggtatatg 72  Q
    |||||||||| ||||||||||| | | || | ||||||||||||||||||| ||||||||    
T  7754928 aatataattgctaattttgttacaaagtggacgttgaatgttgacaaattttggtatatg 7754869  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 12268603 - 12268553
Alignment:
Q  13 aatataattgttaattttgttatatattgaaagttgaatgttgacaaattt 63  Q
    |||||||||| ||||||||||||||  || | |||||||||||||||||||    
T  12268603 aatataattgctaattttgttatatgatggacgttgaatgttgacaaattt 12268553  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 120 - 175
Target Start/End: Original strand, 28106120 - 28106176
Alignment:
Q  120 ctcctaaattgcgtcttaggattagaaagtttt-aaaaaattgcatttttattttac 175  Q
    |||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||    
T  28106120 ctcctaaattgcttcttaggattagaaagttttaaaaaaattacatttttattttac 28106176  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 44002612 - 44002542
Alignment:
Q  4 atgtcgaagaatataattgttaattttgttatata--ttgaaagttgaatgttgacaaatttaggtatatg 72  Q
    |||| ||| |||||||||| |||||||||||||||  ||| | ||||||||||||||| ||| ||||||||    
T  44002612 atgttgaaaaatataattgctaattttgttatatatgttggacgttgaatgttgacaagttttggtatatg 44002542  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 3799458 - 3799401
Alignment:
Q  14 atataattgttaattttgttatatattgaaagttgaatgttgacaaatttaggtatat 71  Q
    ||||||||| || ||||||||||| ||| |  |||||||||||||||||| |||||||    
T  3799458 atataattgctatttttgttatatgttggacattgaatgttgacaaattttggtatat 3799401  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 36438177 - 36438145
Alignment:
Q  154 aaaaattgcatttttattttactgagacctatt 186  Q
    |||||||||||||||||||||||||| ||||||    
T  36438177 aaaaattgcatttttattttactgaggcctatt 36438145  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 108 - 215
Target Start/End: Original strand, 4177647 - 4177755
Alignment:
Q  108 cttcctttatacctcctaaattgcgtcttaggattagaaag-ttttaaaaaattgcatttttattttactgagacctattatactttaagagtcgagcct 206  Q
    |||||||||| ||||||||||||| || |||||||  |||| ||||||||||||| |||||||||||| || |  ||||| |||| | ||||||||||||    
T  4177647 cttcctttatgcctcctaaattgcctcataggattttaaagtttttaaaaaattgtatttttattttaatggggtctattttactatgagagtcgagcct 4177746  T
Q  207 tttatttca 215  Q
      |||||||    
T  4177747 cctatttca 4177755  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 17463218 - 17463285
Alignment:
Q  4 atgtcgaagaatataattgttaattttgttatatattgaaagttgaatgttgacaaatttaggtatat 71  Q
    |||| ||| |||||||||| |||||||||||||| |||   ||||||||||||||||||| |||||||    
T  17463218 atgttgaaaaatataattgctaattttgttatatgttgggtgttgaatgttgacaaattttggtatat 17463285  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 13288915 - 13288959
Alignment:
Q  133 tcttaggattagaaagttttaaaaaattgcatttttattttactg 177  Q
    ||||||||||| |||||||||||||||| | ||||||||||||||    
T  13288915 tcttaggattaaaaagttttaaaaaattacgtttttattttactg 13288959  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 8115612 - 8115671
Alignment:
Q  13 aatataattgttaattttgttatatattgaaagttgaatgttgacaaatttaggtatatg 72  Q
    |||||||||| |||||||||||||| ||| | ||||||||||||||||||| ||||||||    
T  8115612 aatataattgctaattttgttatatgttggacgttgaatgttgacaaattttggtatatg 8115671  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 102 - 179
Target Start/End: Original strand, 8115716 - 8115794
Alignment:
Q  102 ttcagccttcctttatacctcctaaattgcgtcttaggattagaaagttt-taaaaaattgcatttttattttactgag 179  Q
    ||||| |||||| ||| ||| ||||||||| ||||| |||||||||||||  |||||||||| ||||||||||||||||    
T  8115716 ttcagtcttcctctatgccttctaaattgcttcttacgattagaaagtttaaaaaaaattgcgtttttattttactgag 8115794  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 158
Target Start/End: Original strand, 50371627 - 50371677
Alignment:
Q  108 cttcctttatacctcctaaattgcgtcttaggattagaaagttttaaaaaa 158  Q
    |||||| ||| ||||||||||||| || || ||||||||||||||||||||    
T  50371627 cttcctctatgcctcctaaattgcctcctaagattagaaagttttaaaaaa 50371677  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 50371509 - 50371574
Alignment:
Q  4 atgtcgaagaatataattgttaattttgttatatattgaaagttgaatgttgacaaatttaggtat 69  Q
    |||| ||| |||||||||| |||||||||||||| ||| | | |||||||||| |||||| |||||    
T  50371509 atgttgaaaaatataattgctaattttgttatatgttggatgctgaatgttgataaattttggtat 50371574  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 26261664 - 26261723
Alignment:
Q  13 aatataattgttaattttgttatatattgaaagttgaatgttgacaaatttaggtatatg 72  Q
    |||||||||| ||||||| ||||||  || | ||||||||||||||||||| ||||||||    
T  26261664 aatataattggtaattttcttatatggtggacgttgaatgttgacaaattttggtatatg 26261723  T

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