View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21036_low_12 (Length: 480)

Name: NF21036_low_12
Description: NF21036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21036_low_12
NF21036_low_12
[»] chr2 (6 HSPs)
chr2 (173-287)||(35963977-35964091)
chr2 (342-447)||(35963887-35963992)
chr2 (25-108)||(35964159-35964242)
chr2 (302-339)||(26684646-26684683)
chr2 (302-342)||(21779287-21779327)
chr2 (302-342)||(31523300-31523340)
[»] chr8 (4 HSPs)
chr8 (305-342)||(17823645-17823682)
chr8 (302-342)||(8897790-8897830)
chr8 (302-342)||(12670276-12670316)
chr8 (302-342)||(30454123-30454163)
[»] scaffold0180 (1 HSPs)
scaffold0180 (302-342)||(24159-24199)
[»] scaffold0168 (1 HSPs)
scaffold0168 (302-342)||(30646-30686)
[»] scaffold0057 (1 HSPs)
scaffold0057 (302-342)||(24798-24838)
[»] scaffold0015 (1 HSPs)
scaffold0015 (302-342)||(48660-48700)
[»] chr7 (5 HSPs)
chr7 (302-342)||(10693099-10693139)
chr7 (302-342)||(21172035-21172075)
chr7 (302-342)||(32758328-32758368)
chr7 (302-342)||(42391126-42391166)
chr7 (302-342)||(48735148-48735188)
[»] chr6 (2 HSPs)
chr6 (302-342)||(1347031-1347071)
chr6 (302-342)||(1354783-1354823)
[»] chr5 (2 HSPs)
chr5 (302-342)||(8170010-8170050)
chr5 (302-342)||(32703491-32703531)
[»] chr4 (7 HSPs)
chr4 (302-342)||(7909307-7909347)
chr4 (302-342)||(11054174-11054214)
chr4 (302-342)||(20225051-20225091)
chr4 (302-342)||(25463191-25463231)
chr4 (302-342)||(29207924-29207964)
chr4 (302-342)||(38786678-38786718)
chr4 (302-342)||(49796866-49796906)
[»] chr3 (1 HSPs)
chr3 (302-342)||(34771390-34771430)
[»] chr1 (6 HSPs)
chr1 (302-342)||(15505656-15505696)
chr1 (302-342)||(19414529-19414569)
chr1 (302-342)||(32632583-32632623)
chr1 (302-342)||(35253213-35253253)
chr1 (302-342)||(38478308-38478348)
chr1 (302-342)||(45812563-45812603)


Alignment Details
Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 173 - 287
Target Start/End: Complemental strand, 35964091 - 35963977
Alignment:
Q  173 ccttctgattcttttttagcttggaaagctttagaagtatacgctttgcgtttgacttgtaaagagctaaaaatttgtttttcttaggaacattcaagtt 272  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  35964091 ccttctgattcttttttagcttggaaagctttagaagtagacgctttgcgtttgacttgtaaagagctagaaatttgtttctcttaggaacattcaagtt 35963992  T
Q  273 ctccgtttcttcaat 287  Q
    ||| |||||||||||    
T  35963991 ctctgtttcttcaat 35963977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 342 - 447
Target Start/End: Complemental strand, 35963992 - 35963887
Alignment:
Q  342 tctctgtttcttcaatagctgtttcaattttgatctccattttatagaaaggtttcttagaatctttcaatttcaatatgtacattccgtatttgtcttc 441  Q
    |||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  35963992 tctctgtttcttcaatagctgttttacttttgatctccattttataggaaggtttcttagaatatttcaatttcaatatgtacattccgtatttgtcttc 35963893  T
Q  442 caaaca 447  Q
    ||||||    
T  35963892 caaaca 35963887  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 25 - 108
Target Start/End: Complemental strand, 35964242 - 35964159
Alignment:
Q  25 gagaaggtaaaattcatccccactatgctccattgtgatgcctagttgttaaagaacatcttaagaacactcgttaacatttcc 108  Q
    |||||||||||||||||||||| ||||| | ||||| ||||||| ||||||||||  |||||||||||| ||||||||||||||    
T  35964242 gagaaggtaaaattcatccccattatgccctattgtcatgcctaattgttaaagagtatcttaagaacattcgttaacatttcc 35964159  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 339
Target Start/End: Original strand, 26684646 - 26684683
Alignment:
Q  302 cccgcatatgcagggttcgggaagaggttccaccattt 339  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  26684646 cccgcatacgcagggttcgggaagaggtcccaccattt 26684683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 21779287 - 21779327
Alignment:
Q  302 cccgcatatgcagggttcgggaagaggttccaccatttggt 342  Q
    |||||||||||||||| ||||||| ||| ||||||||||||    
T  21779287 cccgcatatgcagggtccgggaaggggtcccaccatttggt 21779327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Complemental strand, 31523340 - 31523300
Alignment:
Q  302 cccgcatatgcagggttcgggaagaggttccaccatttggt 342  Q
    ||||||||||||||||| |||||  ||||||||||||||||    
T  31523340 cccgcatatgcagggtttgggaaagggttccaccatttggt 31523300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 342
Target Start/End: Complemental strand, 17823682 - 17823645
Alignment:
Q  305 gcatatgcagggttcgggaagaggttccaccatttggt 342  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  17823682 gcatatgcagggttcgggaaggggttccaccatttggt 17823645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 8897790 - 8897830
Alignment:
Q  302 cccgcatatgcagggttcgggaagaggttccaccatttggt 342  Q
    |||||||||||||||| ||||||| ||| ||||||||||||    
T  8897790 cccgcatatgcagggtccgggaaggggtcccaccatttggt 8897830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 12670276 - 12670316
Alignment:
Q  302 cccgcatatgcagggttcgggaagaggttccaccatttggt 342  Q
    |||||||||||||||| ||||||| ||| ||||||||||||    
T  12670276 cccgcatatgcagggtccgggaaggggtcccaccatttggt 12670316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 30454123 - 30454163
Alignment:
Q  302 cccgcatatgcagggttcgggaagaggttccaccatttggt 342  Q
    |||||||||||||||| ||||||| ||| ||||||||||||    
T  30454123 cccgcatatgcagggtccgggaaggggtcccaccatttggt 30454163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 24159 - 24199
Alignment:
Q  302 cccgcatatgcagggttcgggaagaggttccaccatttggt 342  Q
    |||||||||||||||| ||||||| ||| ||||||||||||    
T  24159 cccgcatatgcagggtccgggaaggggtcccaccatttggt 24199  T

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Target: scaffold0168 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Complemental strand, 30686 - 30646
Alignment:
Q  302 cccgcatatgcagggttcgggaagaggttccaccatttggt 342  Q
    |||||||||||||||| ||||||| ||| ||||||||||||    
T  30686 cccgcatatgcagggtccgggaaggggtcccaccatttggt 30646  T

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Target: scaffold0057 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 24798 - 24838
Alignment:
Q  302 cccgcatatgcagggttcgggaagaggttccaccatttggt 342  Q
    |||||||| ||||||||||||||| ||| ||||||||||||    
T  24798 cccgcatacgcagggttcgggaaggggtcccaccatttggt 24838  T

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Target: scaffold0015 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 48660 - 48700
Alignment:
Q  302 cccgcatatgcagggttcgggaagaggttccaccatttggt 342  Q
    |||||||||||||||| ||||||| ||| ||||||||||||    
T  48660 cccgcatatgcagggtccgggaaggggtcccaccatttggt 48700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 10693099 - 10693139
Alignment:
Q  302 cccgcatatgcagggttcgggaagaggttccaccatttggt 342  Q
    |||||||||||||||| ||||||| ||| ||||||||||||    
T  10693099 cccgcatatgcagggtccgggaaggggtcccaccatttggt 10693139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 21172035 - 21172075
Alignment:
Q  302 cccgcatatgcagggttcgggaagaggttccaccatttggt 342  Q
    |||||||||||||||| ||||||| ||| ||||||||||||    
T  21172035 cccgcatatgcagggtccgggaaggggtcccaccatttggt 21172075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Complemental strand, 32758368 - 32758328
Alignment:
Q  302 cccgcatatgcagggttcgggaagaggttccaccatttggt 342  Q
    |||||||||||||||| ||||||| ||| ||||||||||||    
T  32758368 cccgcatatgcagggtccgggaaggggtcccaccatttggt 32758328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 42391126 - 42391166
Alignment:
Q  302 cccgcatatgcagggttcgggaagaggttccaccatttggt 342  Q
    |||||||||||||||| ||||||| ||| ||||||||||||    
T  42391126 cccgcatatgcagggtccgggaaggggtcccaccatttggt 42391166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 48735148 - 48735188
Alignment:
Q  302 cccgcatatgcagggttcgggaagaggttccaccatttggt 342  Q
    |||||||||||||||| ||||||| ||| ||||||||||||    
T  48735148 cccgcatatgcagggtccgggaaggggtcccaccatttggt 48735188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Complemental strand, 1347071 - 1347031
Alignment:
Q  302 cccgcatatgcagggttcgggaagaggttccaccatttggt 342  Q
    |||||||||||||||| ||||||| ||| ||||||||||||    
T  1347071 cccgcatatgcagggtccgggaaggggtcccaccatttggt 1347031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 1354783 - 1354823
Alignment:
Q  302 cccgcatatgcagggttcgggaagaggttccaccatttggt 342  Q
    |||||||||||||||| ||||||| ||| ||||||||||||    
T  1354783 cccgcatatgcagggtccgggaaggggtcccaccatttggt 1354823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 8170010 - 8170050
Alignment:
Q  302 cccgcatatgcagggttcgggaagaggttccaccatttggt 342  Q
    |||||||||||||||| ||||||| ||| ||||||||||||    
T  8170010 cccgcatatgcagggtccgggaaggggtcccaccatttggt 8170050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Complemental strand, 32703531 - 32703491
Alignment:
Q  302 cccgcatatgcagggttcgggaagaggttccaccatttggt 342  Q
    |||||||||||||||| ||||||| ||| ||||||||||||    
T  32703531 cccgcatatgcagggtccgggaaggggtcccaccatttggt 32703491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 7909307 - 7909347
Alignment:
Q  302 cccgcatatgcagggttcgggaagaggttccaccatttggt 342  Q
    |||||||| ||||||||||||||| ||| ||||||||||||    
T  7909307 cccgcatacgcagggttcgggaaggggtcccaccatttggt 7909347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 11054174 - 11054214
Alignment:
Q  302 cccgcatatgcagggttcgggaagaggttccaccatttggt 342  Q
    |||||||||||||||| ||||||| |||||| |||||||||    
T  11054174 cccgcatatgcagggtccgggaaggggttccgccatttggt 11054214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Complemental strand, 20225091 - 20225051
Alignment:
Q  302 cccgcatatgcagggttcgggaagaggttccaccatttggt 342  Q
    |||||||||||||||| ||||||| ||| ||||||||||||    
T  20225091 cccgcatatgcagggtccgggaaggggtcccaccatttggt 20225051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Complemental strand, 25463231 - 25463191
Alignment:
Q  302 cccgcatatgcagggttcgggaagaggttccaccatttggt 342  Q
    |||||||||||||||| ||||||| ||| ||||||||||||    
T  25463231 cccgcatatgcagggtccgggaaggggtcccaccatttggt 25463191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 29207924 - 29207964
Alignment:
Q  302 cccgcatatgcagggttcgggaagaggttccaccatttggt 342  Q
    |||||||||||||||| ||||||| ||| ||||||||||||    
T  29207924 cccgcatatgcagggtccgggaaggggtcccaccatttggt 29207964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Complemental strand, 38786718 - 38786678
Alignment:
Q  302 cccgcatatgcagggttcgggaagaggttccaccatttggt 342  Q
    |||||||||||||||| ||||||| ||| ||||||||||||    
T  38786718 cccgcatatgcagggtccgggaaggggtcccaccatttggt 38786678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Complemental strand, 49796906 - 49796866
Alignment:
Q  302 cccgcatatgcagggttcgggaagaggttccaccatttggt 342  Q
    |||||||| ||||||||||||||| ||| ||||||||||||    
T  49796906 cccgcatacgcagggttcgggaaggggtcccaccatttggt 49796866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 34771390 - 34771430
Alignment:
Q  302 cccgcatatgcagggttcgggaagaggttccaccatttggt 342  Q
    |||||||||||||||| ||||||| ||| ||||||||||||    
T  34771390 cccgcatatgcagggtccgggaaggggtcccaccatttggt 34771430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Complemental strand, 15505696 - 15505656
Alignment:
Q  302 cccgcatatgcagggttcgggaagaggttccaccatttggt 342  Q
    |||||||| ||||||||||||||| ||| ||||||||||||    
T  15505696 cccgcatacgcagggttcgggaaggggtcccaccatttggt 15505656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Complemental strand, 19414569 - 19414529
Alignment:
Q  302 cccgcatatgcagggttcgggaagaggttccaccatttggt 342  Q
    |||||||||||||||| ||||||| ||| ||||||||||||    
T  19414569 cccgcatatgcagggtacgggaaggggtcccaccatttggt 19414529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 32632583 - 32632623
Alignment:
Q  302 cccgcatatgcagggttcgggaagaggttccaccatttggt 342  Q
    ||||||||||||||||| |||||| ||| ||||||||||||    
T  32632583 cccgcatatgcagggtttgggaaggggtcccaccatttggt 32632623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 35253213 - 35253253
Alignment:
Q  302 cccgcatatgcagggttcgggaagaggttccaccatttggt 342  Q
    |||||||||||||||| ||||||| ||| ||||||||||||    
T  35253213 cccgcatatgcagggtccgggaaggggtcccaccatttggt 35253253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 38478308 - 38478348
Alignment:
Q  302 cccgcatatgcagggttcgggaagaggttccaccatttggt 342  Q
    |||||||||||||||| || |||| ||||||||||||||||    
T  38478308 cccgcatatgcagggtccgagaaggggttccaccatttggt 38478348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 45812563 - 45812603
Alignment:
Q  302 cccgcatatgcagggttcgggaagaggttccaccatttggt 342  Q
    ||||||||||||||||| |||||| ||| ||||||||||||    
T  45812563 cccgcatatgcagggtttgggaaggggtcccaccatttggt 45812603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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