View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21036_low_13 (Length: 475)

Name: NF21036_low_13
Description: NF21036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21036_low_13
NF21036_low_13
[»] chr8 (5 HSPs)
chr8 (45-227)||(3872164-3872346)
chr8 (326-457)||(3871930-3872061)
chr8 (44-170)||(3870768-3870894)
chr8 (43-167)||(17863465-17863589)
chr8 (43-95)||(5014834-5014886)
[»] chr4 (7 HSPs)
chr4 (44-185)||(30829927-30830068)
chr4 (44-167)||(52189186-52189309)
chr4 (44-178)||(52190296-52190430)
chr4 (57-125)||(31409326-31409394)
chr4 (398-457)||(45991920-45991979)
chr4 (44-95)||(41774644-41774695)
chr4 (47-167)||(8480886-8481006)
[»] chr3 (4 HSPs)
chr3 (40-180)||(9099556-9099696)
chr3 (44-167)||(20997633-20997756)
chr3 (42-125)||(19801784-19801867)
chr3 (85-179)||(37463720-37463814)
[»] chr7 (2 HSPs)
chr7 (100-185)||(41739678-41739763)
chr7 (100-167)||(41740964-41741031)
[»] chr1 (7 HSPs)
chr1 (44-179)||(26529508-26529643)
chr1 (44-167)||(36573962-36574085)
chr1 (38-148)||(35062558-35062668)
chr1 (94-180)||(35063547-35063633)
chr1 (159-215)||(46152093-46152149)
chr1 (398-457)||(46151840-46151899)
chr1 (40-130)||(49919676-49919766)
[»] chr5 (4 HSPs)
chr5 (43-185)||(38921454-38921596)
chr5 (100-185)||(35968616-35968701)
chr5 (101-167)||(35967405-35967471)
chr5 (35-179)||(16727803-16727947)
[»] chr2 (2 HSPs)
chr2 (44-167)||(31622043-31622166)
chr2 (41-167)||(40894809-40894935)


Alignment Details
Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 45 - 227
Target Start/End: Complemental strand, 3872346 - 3872164
Alignment:
Q  45 agtaaactctcatttgggcccctgaaagtgcacgtcggtgtcaaccacgtctcttgatcaattaaacgaaccaaaaactcctccaatggttgtcccgtta 144  Q
    ||||||| ||| |||||| |||||||||||||| ||| | ||| ||||||| ||  ||||||||||||||||||||||||   |||||||| | ||||||    
T  3872346 agtaaaccctcgtttgggtccctgaaagtgcacctcgctatcagccacgtccctgtatcaattaaacgaaccaaaaactctctcaatggttattccgtta 3872247  T
Q  145 gtcaatttcgtccaaaacgttaagttgctgttaactttgttgacatgtcatttaatgatgctgaggtggcagactgataagaa 227  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  3872246 gtcaatttcgtccaaaacgttaagttgttgttcactttgttgacatgtcatttaatgatgctgacgtgacagactgataagaa 3872164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 326 - 457
Target Start/End: Complemental strand, 3872061 - 3871930
Alignment:
Q  326 catgttctttctccttgatcattcattattgaacctgtttatctgagcccagaaaactagatctaaattctctatgtatcaattccaaacacattttact 425  Q
    |||||||||||||||||||||||||||||||||| |||| |||| ||||| |||| |||||||||||||||||||||||||||||||||| ||||||||     
T  3872061 catgttctttctccttgatcattcattattgaacttgttcatctaagcccggaaagctagatctaaattctctatgtatcaattccaaacccattttacg 3871962  T
Q  426 acatccacataaaagaaatttctcacaaatcc 457  Q
    |||||||||||||| |||||||||||||||||    
T  3871961 acatccacataaaataaatttctcacaaatcc 3871930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 44 - 170
Target Start/End: Original strand, 3870768 - 3870894
Alignment:
Q  44 gagtaaactctcatttgggcccctgaaagtgcacgtcggtgtcaaccacgtctcttgatcaattaaacgaaccaaaaactcctccaatggttgtcccgtt 143  Q
    |||||||| |||| ||||| |||||||| ||||  ||| | ||| ||||||| || |||||||||| |||| |||||||||| ||||| ||||| |||||    
T  3870768 gagtaaaccctcacttgggtccctgaaaatgcatttcgctatcagccacgtccctagatcaattaagcgaatcaaaaactcccccaatagttgttccgtt 3870867  T
Q  144 agtcaatttcgtccaaaacgttaagtt 170  Q
    |||||||||||||||||||||||||||    
T  3870868 agtcaatttcgtccaaaacgttaagtt 3870894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 43 - 167
Target Start/End: Original strand, 17863465 - 17863589
Alignment:
Q  43 tgagtaaactctcatttgggcccctgaaagtgcacgtcggtgtcaaccacgtctcttgatcaattaaacgaaccaaaaactcctccaatggttgtcccgt 142  Q
    ||||||||| |||||||||| |||||||||||||| ||| | ||| |||| ||  | |||||||||||  ||||||||||||||||||||  ||| ||||    
T  17863465 tgagtaaaccctcatttgggtccctgaaagtgcacctcgctatcagccacatccttggatcaattaaataaaccaaaaactcctccaatgtatgttccgt 17863564  T
Q  143 tagtcaatttcgtccaaaacgttaa 167  Q
     |||||| | | |||||||||||||    
T  17863565 cagtcaaatgcatccaaaacgttaa 17863589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 5014886 - 5014834
Alignment:
Q  43 tgagtaaactctcatttgggcccctgaaagtgcacgtcggtgtcaaccacgtc 95  Q
    ||||||||| |||||||||| ||||||||||| || ||| | |||||||||||    
T  5014886 tgagtaaaccctcatttgggtccctgaaagtgtacctcgctatcaaccacgtc 5014834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 44 - 185
Target Start/End: Original strand, 30829927 - 30830068
Alignment:
Q  44 gagtaaactctcatttgggcccctgaaagtgcacgtcggtgtcaaccacgtctcttgatcaattaaacgaaccaaaaactcctccaatggttgtcccgtt 143  Q
    |||||||| |||||||||| |||||||||||    ||| | |||  ||| || || ||||||| |||||||||||||||||| |||||| ||||  ||||    
T  30829927 gagtaaaccctcatttgggtccctgaaagtgttgctcgctatcaggcacatccctagatcaatgaaacgaaccaaaaactcccccaatgattgtttcgtt 30830026  T
Q  144 agtcaatttcgtccaaaacgttaagttgctgttaactttgtt 185  Q
    |||||| | | ||||||||||||| ||| |||||||| ||||    
T  30830027 agtcaaatgcatccaaaacgttaacttggtgttaactctgtt 30830068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 44 - 167
Target Start/End: Original strand, 52189186 - 52189309
Alignment:
Q  44 gagtaaactctcatttgggcccctgaaagtgcacgtcggtgtcaaccacgtctcttgatcaattaaacgaaccaaaaactcctccaatggttgtcccgtt 143  Q
    |||||||| |||||||||| |||||||||||||| ||| | ||| |||| || || |||||||||||| || |||||||||   |||||  ||| |||||    
T  52189186 gagtaaaccctcatttgggtccctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaatcaaaaactcgctcaatgtatgttccgtt 52189285  T
Q  144 agtcaatttcgtccaaaacgttaa 167  Q
    |||||| | | |||||||||||||    
T  52189286 agtcaaatgcatccaaaacgttaa 52189309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 44 - 178
Target Start/End: Complemental strand, 52190430 - 52190296
Alignment:
Q  44 gagtaaactctcatttgggcccctgaaagtgcacgtcggtgtcaaccacgtctcttgatcaattaaacgaaccaaaaactcctccaatggttgtcccgtt 143  Q
    |||||||| |||||||||| |||||||||||||  ||| | ||| |||  ||  | |||||||||||||||||||||||||| ||||||  |||   |||    
T  52190430 gagtaaaccctcatttgggtccctgaaagtgcatctcgctatcagccagatccatggatcaattaaacgaaccaaaaactcccccaatgtctgttttgtt 52190331  T
Q  144 agtcaatttcgtccaaaacgttaagttgctgttaa 178  Q
    |||||| | | ||||||||||||| ||| ||||||    
T  52190330 agtcaaatgcatccaaaacgttaacttggtgttaa 52190296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 125
Target Start/End: Original strand, 31409326 - 31409394
Alignment:
Q  57 tttgggcccctgaaagtgcacgtcggtgtcaaccacgtctcttgatcaattaaacgaaccaaaaactcc 125  Q
    |||||| |||||||||||||| ||| | |||||||||||  | |||||| |||||||||||||||||||    
T  31409326 tttgggtccctgaaagtgcacctcgctatcaaccacgtccttggatcaaataaacgaaccaaaaactcc 31409394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 457
Target Start/End: Complemental strand, 45991979 - 45991920
Alignment:
Q  398 tatgtatcaattccaaacacattttactacatccacat-aaaagaaatttctcacaaatcc 457  Q
    ||||||||||||| |||| |||||||| |||||||||| ||||||||||||||||| ||||    
T  45991979 tatgtatcaattctaaac-cattttacgacatccacataaaaagaaatttctcacagatcc 45991920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 95
Target Start/End: Original strand, 41774644 - 41774695
Alignment:
Q  44 gagtaaactctcatttgggcccctgaaagtgcacgtcggtgtcaaccacgtc 95  Q
    ||||||||||||||||||| ||||||||||| || ||| | |||||||||||    
T  41774644 gagtaaactctcatttgggtccctgaaagtgtacctcgctatcaaccacgtc 41774695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 167
Target Start/End: Complemental strand, 8481006 - 8480886
Alignment:
Q  47 taaactctcatttgggcccctgaaagtgcacgtcggtgtcaaccacgtctcttgatcaattaaacgaaccaaaaactcctccaatggttgtcccgttagt 146  Q
    |||||||||||||| | ||||||||||| |  ||| | |||  |||||| || ||||||| ||||| |||||||||||| |||| |  | | ||||||||    
T  8481006 taaactctcatttgagtccctgaaagtgtatctcgctatcagtcacgtccctggatcaatgaaacgcaccaaaaactcccccaaagtctcttccgttagt 8480907  T
Q  147 caatttcgtccaaaacgttaa 167  Q
    || |  | |||||||||||||    
T  8480906 cattcccatccaaaacgttaa 8480886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 180
Target Start/End: Original strand, 9099556 - 9099696
Alignment:
Q  40 ttttgagtaaactctcatttgggcccctgaaagtgcacgtcggtgtcaaccacgtctcttgatcaattaaacgaaccaaaaactcctccaatggttgtcc 139  Q
    |||||||||||| |||||||||| |||| |||||| || ||| | |||| ||| || ||  |||||| ||||||||||||||||| | ||||| | || |    
T  9099556 ttttgagtaaaccctcatttgggtcccttaaagtgtacctcgctatcaagcacatccctgaatcaatgaaacgaaccaaaaactctttcaatgttggttc 9099655  T
Q  140 cgttagtcaatttcgtccaaaacgttaagttgctgttaact 180  Q
    |||||||||| |  |||||||||||||| ||  ||||||||    
T  9099656 cgttagtcaaataagtccaaaacgttaacttagtgttaact 9099696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 167
Target Start/End: Original strand, 20997633 - 20997756
Alignment:
Q  44 gagtaaactctcatttgggcccctgaaagtgcacgtcggtgtcaaccacgtctcttgatcaattaaacgaaccaaaaactcctccaatggttgtcccgtt 143  Q
    |||||||| |||||||||| |||||||| || || ||| | |||| ||| || |  ||||||| |||| |||||||||||||| ||||| | ||  ||||    
T  20997633 gagtaaaccctcatttgggtccctgaaaatgtacctcgctatcaagcacatcccaggatcaataaaacaaaccaaaaactccttcaatgttggtttcgtt 20997732  T
Q  144 agtcaatttcgtccaaaacgttaa 167  Q
    |||||| |  ||||||||||||||    
T  20997733 agtcaaataagtccaaaacgttaa 20997756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 19801784 - 19801867
Alignment:
Q  42 ttgagtaaactctcatttgggcccctgaaagtgcacgtcggtgtcaaccacgtctcttgatcaattaaacgaaccaaaaactcc 125  Q
    |||||||||| ||||||  || ||||||||||| || ||| | ||| | |||||  | ||||||||||||||||||||||||||    
T  19801784 ttgagtaaaccctcattccggtccctgaaagtgtacctcgctatcagctacgtccttagatcaattaaacgaaccaaaaactcc 19801867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 37463720 - 37463814
Alignment:
Q  85 tcaaccacgtctcttgatcaattaaacgaaccaaaaactcctccaatggttgtcccgttagtcaatttcgtccaaaacgttaagttgctgttaac 179  Q
    |||| |||||| || ||||||| |||||| |||||||||| || ||||  | | || ||||||| || ||||||||||||||| ||| |||||||    
T  37463720 tcaagcacgtccctggatcaatgaaacgatccaaaaactcatctaatgtctcttccattagtcatttacgtccaaaacgttaacttggtgttaac 37463814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 100 - 185
Target Start/End: Original strand, 41739678 - 41739763
Alignment:
Q  100 gatcaattaaacgaaccaaaaactcctccaatggttgtcccgttagtcaatttcgtccaaaacgttaagttgctgttaactttgtt 185  Q
    ||||||| |||||||||||||||||| |||||| ||||  |||||||||| | | ||||||||||||| ||| |||||||| ||||    
T  41739678 gatcaatgaaacgaaccaaaaactcccccaatgattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaactctgtt 41739763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 167
Target Start/End: Complemental strand, 41741031 - 41740964
Alignment:
Q  100 gatcaattaaacgaaccaaaaactcctccaatggttgtcccgttagtcaatttcgtccaaaacgttaa 167  Q
    |||||||||||| ||||||||||||| |||||  |||| ||||||||||    |||||||||||||||    
T  41741031 gatcaattaaactaaccaaaaactcccccaatatttgttccgttagtcatccacgtccaaaacgttaa 41740964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 179
Target Start/End: Original strand, 26529508 - 26529643
Alignment:
Q  44 gagtaaactctcatttgggcccctgaaagtgcacgtcggtgtcaaccacgtctcttgatcaattaaacgaaccaaaaactcctccaatggttgtcccgtt 143  Q
    |||||||| |||||||||| ||||||||||| || ||| | |||  |||||| ||  |||||  |||||||| |||||||||  ||||| |||| | |||    
T  26529508 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcagacacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtttgttctgtt 26529607  T
Q  144 agtcaatttcgtccaaaacgttaagttgctgttaac 179  Q
    |||||| | | ||||||||||||| ||| |||||||    
T  26529608 agtcaaatgcatccaaaacgttaacttgatgttaac 26529643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 167
Target Start/End: Original strand, 36573962 - 36574085
Alignment:
Q  44 gagtaaactctcatttgggcccctgaaagtgcacgtcggtgtcaaccacgtctcttgatcaattaaacgaaccaaaaactcctccaatggttgtcccgtt 143  Q
    |||||||| ||||||| || ||||||||||| || ||| | ||||||||||| ||  |||||  |||||||| |||||||||  |||||  ||| |||||    
T  36573962 gagtaaacactcatttaggtccctgaaagtgtacctcgctatcaaccacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttccgtt 36574061  T
Q  144 agtcaatttcgtccaaaacgttaa 167  Q
    |||||| | | |||||||||||||    
T  36574062 agtcaaatgcatccaaaacgttaa 36574085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 38 - 148
Target Start/End: Original strand, 35062558 - 35062668
Alignment:
Q  38 tattttgagtaaactctcatttgggcccctgaaagtgcacgtcggtgtcaaccacgtctcttgatcaattaaacgaaccaaaaactcctccaatggttgt 137  Q
    ||||| ||||||||  |||||||||  ||| ||||| ||| ||| | |||||||| || ||  ||||||||||| ||||||||||||| |||||| ||||    
T  35062558 tatttcgagtaaaccttcatttgggttcctaaaagttcacctcgttatcaaccacatccctgaatcaattaaactaaccaaaaactcccccaatgtttgt 35062657  T
Q  138 cccgttagtca 148  Q
     ||||||||||    
T  35062658 tccgttagtca 35062668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 94 - 180
Target Start/End: Complemental strand, 35063633 - 35063547
Alignment:
Q  94 tctcttgatcaattaaacgaaccaaaaactcctccaatggttgtcccgttagtcaatttcgtccaaaacgttaagttgctgttaact 180  Q
    ||||| ||||||| |||||||||||||||||| |||||  ||||  |||||||||| | | ||||||||||||| ||| ||||||||    
T  35063633 tctctagatcaatgaaacgaaccaaaaactcccccaattattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaact 35063547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 46152149 - 46152093
Alignment:
Q  159 aaacgttaagttgctgttaactttgttgacatgtcatttaatgatgctgaggtggca 215  Q
    ||||||||| ||| ||||||||||| |||||||||||||||||||| ||| ||||||    
T  46152149 aaacgttaacttgttgttaactttgatgacatgtcatttaatgatgttgatgtggca 46152093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 457
Target Start/End: Complemental strand, 46151899 - 46151840
Alignment:
Q  398 tatgtatcaattccaaacacattttactacatccacataaaa-gaaatttctcacaaatcc 457  Q
    ||||||||||||| |||| || ||||| |||||||||||||| ||||||||||||||||||    
T  46151899 tatgtatcaattctaaac-cactttacgacatccacataaaaagaaatttctcacaaatcc 46151840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 130
Target Start/End: Complemental strand, 49919766 - 49919676
Alignment:
Q  40 ttttgagtaaactctcatttgggcccctgaaagtgcacgtcggtgtcaaccacgtctcttgatcaattaaacgaaccaaaaactcctccaa 130  Q
    ||||||||||||||||||||||| || ||||||||  | ||| | |||  ||| || || ||||||| ||||| |||||||||||| ||||    
T  49919766 ttttgagtaaactctcatttgggtccttgaaagtgtgcatcgctatcagtcacttccctggatcaatgaaacgcaccaaaaactcccccaa 49919676  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 43 - 185
Target Start/End: Original strand, 38921454 - 38921596
Alignment:
Q  43 tgagtaaactctcatttgggcccctgaaagtgcacgtcggtgtcaaccacgtctcttgatcaattaaacgaaccaaaaactcctccaatggttgtcccgt 142  Q
    ||||||||| |||||||||| |||||||||||    ||  | |||  ||| || || ||||||| ||| |||||||||||||| |||||| ||||  |||    
T  38921454 tgagtaaaccctcatttgggtccctgaaagtgttgctcactatcaggcacatccctagatcaatgaaatgaaccaaaaactcccccaatgattgtttcgt 38921553  T
Q  143 tagtcaatttcgtccaaaacgttaagttgctgttaactttgtt 185  Q
    ||||||| | | ||||||||||||| ||| |||||||| ||||    
T  38921554 tagtcaaatgcatccaaaacgttaacttggtgttaactctgtt 38921596  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 100 - 185
Target Start/End: Complemental strand, 35968701 - 35968616
Alignment:
Q  100 gatcaattaaacgaaccaaaaactcctccaatggttgtcccgttagtcaatttcgtccaaaacgttaagttgctgttaactttgtt 185  Q
    ||||||| |||||||||||||||||| |||||  ||||   ||||||||| | | ||||||||||||| ||| |||||||||||||    
T  35968701 gatcaatgaaacgaaccaaaaactcccccaattattgttttgttagtcaaatgcatccaaaacgttaacttggtgttaactttgtt 35968616  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 167
Target Start/End: Original strand, 35967405 - 35967471
Alignment:
Q  101 atcaattaaacgaaccaaaaactcctccaatggttgtcccgttagtcaatttcgtccaaaacgttaa 167  Q
    ||||||||||| ||||||||||||| |||||| |||| |||||||||||   |||||||||| ||||    
T  35967405 atcaattaaactaaccaaaaactcccccaatgtttgttccgttagtcaaccacgtccaaaacattaa 35967471  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 179
Target Start/End: Original strand, 16727803 - 16727947
Alignment:
Q  35 tattattttgagtaaactctcatttgggcccctgaaagtgcacgtcggtgtcaaccacgtctcttgatcaattaaacgaaccaaaaactcctccaatggt 134  Q
    |||| |||| ||||||| |||||||||| | ||||||||| || ||| | ||| ||||||  ||  |||||  |||||||| ||||||| |  |||||      
T  16727803 tatttttttaagtaaaccctcatttgggtcgctgaaagtgtacctcgctatcagccacgttcctgaatcaagaaaacgaactaaaaacttcctcaatgtc 16727902  T
Q  135 tgtcccgttagtcaatttcgtccaaaacgttaagttgctgttaac 179  Q
    ||| ||||||||||| | | |||||||| |||| ||| |||||||    
T  16727903 tgttccgttagtcaaatgcatccaaaacattaacttgatgttaac 16727947  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 167
Target Start/End: Complemental strand, 31622166 - 31622043
Alignment:
Q  44 gagtaaactctcatttgggcccctgaaagtgcacgtcggtgtcaaccacgtctcttgatcaattaaacgaaccaaaaactcctccaatggttgtcccgtt 143  Q
    |||||||| || ||||||| ||||||||||| || ||| | ||||||||||| ||  |||||  |||| ||| |||||||||  ||||| |||| |||||    
T  31622166 gagtaaacccttatttgggtccctgaaagtgtacctcgttatcaaccacgtccctgaatcaagaaaacaaactaaaaactccctcaatgtttgttccgtt 31622067  T
Q  144 agtcaatttcgtccaaaacgttaa 167  Q
     ||||| | | |||||||||||||    
T  31622066 tgtcaaatgcatccaaaacgttaa 31622043  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 167
Target Start/End: Complemental strand, 40894935 - 40894809
Alignment:
Q  41 tttgagtaaactctcatttgggcccctgaaagtgcacgtcggtgtcaaccacgtctcttgatcaattaaacgaaccaaaaactcctccaatggttgtccc 140  Q
    ||||||||||| |||||||||  |||| |||||| || ||| | |||   ||||| || ||||||| |||||||| ||||||||| ||||||  | | ||    
T  40894935 tttgagtaaaccctcatttggatccctaaaagtgtacctcgctatcaggtacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttcc 40894836  T
Q  141 gttagtcaatttcgtccaaaacgttaa 167  Q
    |||||||| |  |||||||||||||||    
T  40894835 gttagtcattcacgtccaaaacgttaa 40894809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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