View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21036_low_16 (Length: 424)

Name: NF21036_low_16
Description: NF21036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21036_low_16
NF21036_low_16
[»] chr6 (17 HSPs)
chr6 (223-406)||(7806917-7807103)
chr6 (60-156)||(7807183-7807279)
chr6 (25-120)||(11455852-11455947)
chr6 (41-137)||(25087319-25087415)
chr6 (70-149)||(26142011-26142090)
chr6 (69-142)||(25510714-25510787)
chr6 (41-120)||(2523695-2523774)
chr6 (41-120)||(5064210-5064289)
chr6 (41-120)||(29919156-29919235)
chr6 (41-120)||(30592466-30592545)
chr6 (41-118)||(10838830-10838907)
chr6 (35-116)||(20219723-20219804)
chr6 (35-116)||(22113748-22113829)
chr6 (58-118)||(12977586-12977646)
chr6 (41-120)||(34783832-34783911)
chr6 (58-118)||(13013551-13013611)
chr6 (253-302)||(10415511-10415559)
[»] chr5 (18 HSPs)
chr5 (25-120)||(1752036-1752131)
chr5 (25-120)||(11725915-11726010)
chr5 (25-120)||(2956268-2956363)
chr5 (58-137)||(669446-669525)
chr5 (45-120)||(2851493-2851568)
chr5 (29-92)||(16617743-16617806)
chr5 (41-120)||(21119712-21119791)
chr5 (41-118)||(41307937-41308014)
chr5 (60-120)||(35859033-35859093)
chr5 (41-120)||(10642250-10642329)
chr5 (41-120)||(30984874-30984953)
chr5 (58-118)||(15295419-15295479)
chr5 (41-120)||(9617025-9617104)
chr5 (30-92)||(18672756-18672818)
chr5 (38-92)||(35384863-35384917)
chr5 (35-85)||(30404109-30404159)
chr5 (29-125)||(37276674-37276763)
chr5 (27-116)||(10329077-10329161)
[»] chr7 (23 HSPs)
chr7 (25-118)||(44118414-44118507)
chr7 (25-118)||(1828630-1828723)
chr7 (25-120)||(47646135-47646230)
chr7 (29-118)||(12313216-12313305)
chr7 (58-120)||(518222-518284)
chr7 (224-351)||(19317969-19318098)
chr7 (41-120)||(17707081-17707160)
chr7 (41-120)||(32812940-32813019)
chr7 (41-120)||(37468280-37468359)
chr7 (27-89)||(33119370-33119432)
chr7 (58-118)||(25676625-25676686)
chr7 (41-120)||(16730009-16730088)
chr7 (41-120)||(45296214-45296293)
chr7 (67-129)||(33618493-33618555)
chr7 (58-118)||(12848087-12848147)
chr7 (66-137)||(557591-557662)
chr7 (41-120)||(4582186-4582265)
chr7 (60-137)||(7792053-7792135)
chr7 (58-118)||(18927979-18928039)
chr7 (58-106)||(21146157-21146205)
chr7 (39-81)||(42027315-42027357)
chr7 (60-106)||(7495466-7495512)
chr7 (60-89)||(29008028-29008057)
[»] chr1 (17 HSPs)
chr1 (25-118)||(21373276-21373369)
chr1 (25-89)||(37661300-37661364)
chr1 (29-92)||(15545200-15545263)
chr1 (30-92)||(44565748-44565810)
chr1 (29-92)||(2326162-2326225)
chr1 (29-92)||(29744130-29744193)
chr1 (35-106)||(33506408-33506479)
chr1 (29-92)||(42887347-42887410)
chr1 (41-120)||(43055231-43055310)
chr1 (58-120)||(50579504-50579566)
chr1 (29-92)||(11385545-11385608)
chr1 (29-92)||(51621198-51621261)
chr1 (60-118)||(43637856-43637914)
chr1 (68-115)||(25699653-25699700)
chr1 (35-125)||(17306893-17306983)
chr1 (58-92)||(46833907-46833941)
chr1 (60-105)||(9398595-9398640)
[»] chr2 (28 HSPs)
chr2 (18-120)||(43589175-43589277)
chr2 (29-92)||(10356349-10356412)
chr2 (25-92)||(16256884-16256951)
chr2 (29-92)||(28809404-28809467)
chr2 (58-129)||(41759493-41759564)
chr2 (35-106)||(34209749-34209820)
chr2 (29-92)||(35733925-35733988)
chr2 (41-120)||(37426343-37426422)
chr2 (41-120)||(42453126-42453205)
chr2 (63-120)||(12391931-12391988)
chr2 (29-92)||(7758576-7758639)
chr2 (41-120)||(35466648-35466727)
chr2 (64-120)||(45326496-45326552)
chr2 (66-148)||(36212999-36213086)
chr2 (68-118)||(9302643-9302693)
chr2 (34-106)||(34041850-34041922)
chr2 (65-137)||(43870874-43870946)
chr2 (61-120)||(17153410-17153469)
chr2 (41-108)||(35860652-35860719)
chr2 (68-118)||(28137530-28137580)
chr2 (57-106)||(13173648-13173697)
chr2 (66-106)||(26275494-26275534)
chr2 (31-91)||(31916955-31917015)
chr2 (67-118)||(37486218-37486269)
chr2 (69-137)||(38285662-38285740)
chr2 (60-102)||(5616732-5616774)
chr2 (60-106)||(39576451-39576497)
chr2 (60-145)||(85940-86025)
[»] chr8 (20 HSPs)
chr8 (25-118)||(2956675-2956768)
chr8 (25-119)||(43048617-43048711)
chr8 (41-137)||(12391716-12391812)
chr8 (25-139)||(36557776-36557896)
chr8 (25-92)||(6602362-6602429)
chr8 (25-92)||(6677815-6677882)
chr8 (57-118)||(26758443-26758504)
chr8 (41-120)||(30591259-30591338)
chr8 (41-120)||(30887330-30887409)
chr8 (58-120)||(4599440-4599502)
chr8 (66-137)||(2378514-2378585)
chr8 (25-88)||(43634344-43634407)
chr8 (58-120)||(6575592-6575654)
chr8 (41-123)||(31960350-31960432)
chr8 (35-92)||(21594563-21594620)
chr8 (65-124)||(43748714-43748778)
chr8 (86-137)||(34740960-34741011)
chr8 (39-106)||(40978292-40978359)
chr8 (61-137)||(14123479-14123555)
chr8 (63-102)||(12110558-12110597)
[»] chr3 (15 HSPs)
chr3 (25-118)||(46484820-46484913)
chr3 (41-120)||(19286208-19286287)
chr3 (41-120)||(40997010-40997089)
chr3 (58-120)||(14985-15047)
chr3 (41-120)||(21913372-21913451)
chr3 (58-120)||(41950429-41950491)
chr3 (41-118)||(44926560-44926637)
chr3 (41-120)||(50902246-50902325)
chr3 (58-118)||(14600194-14600254)
chr3 (60-118)||(5409606-5409664)
chr3 (58-112)||(33047686-33047740)
chr3 (59-137)||(42168154-42168237)
chr3 (60-118)||(18364396-18364454)
chr3 (69-118)||(21458789-21458838)
chr3 (39-106)||(104868-104935)
[»] chr4 (24 HSPs)
chr4 (25-125)||(42738922-42739022)
chr4 (25-92)||(38023913-38023980)
chr4 (29-106)||(49283460-49283537)
chr4 (64-137)||(19914473-19914546)
chr4 (35-106)||(1921884-1921955)
chr4 (41-120)||(26496583-26496662)
chr4 (41-120)||(36668336-36668415)
chr4 (29-92)||(37564456-37564519)
chr4 (58-120)||(3151130-3151192)
chr4 (58-116)||(20254894-20254952)
chr4 (29-92)||(6884420-6884483)
chr4 (35-106)||(22443109-22443180)
chr4 (29-92)||(29191688-29191751)
chr4 (60-114)||(21232971-21233025)
chr4 (41-115)||(34150600-34150674)
chr4 (29-115)||(41279822-41279908)
chr4 (35-92)||(47498288-47498345)
chr4 (58-143)||(35234290-35234380)
chr4 (58-135)||(50179854-50179930)
chr4 (61-120)||(49318710-49318770)
chr4 (74-108)||(5092261-5092295)
chr4 (63-92)||(55874265-55874294)
chr4 (70-118)||(16335748-16335796)
chr4 (63-103)||(27552780-27552820)
[»] scaffold0735 (1 HSPs)
scaffold0735 (29-92)||(300-363)
[»] scaffold0365 (1 HSPs)
scaffold0365 (41-120)||(1158-1237)
[»] scaffold0024 (1 HSPs)
scaffold0024 (58-120)||(95424-95486)
[»] scaffold0294 (1 HSPs)
scaffold0294 (60-115)||(5684-5739)
[»] scaffold0608 (1 HSPs)
scaffold0608 (58-135)||(314-390)
[»] scaffold0088 (1 HSPs)
scaffold0088 (60-120)||(41569-41627)
[»] scaffold0079 (1 HSPs)
scaffold0079 (70-118)||(57064-57112)


Alignment Details
Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 223 - 406
Target Start/End: Complemental strand, 7807103 - 7806917
Alignment:
Q  223 attggtttggaccttgggcttgttgtgtgagccttttagtataaatagcaaccaaattatacgattggagaatttattcaatcccttagctatgaagaaa 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  7807103 attggtttggaccttgggcttgttgtgtgagccttttagtataaatagcaaccaagttatacgattggtgaatttattcaatcccttagctatgaagaaa 7807004  T
Q  323 agaaggaaactacgagaatcgaaggaaaagagggttc---attcagcttcttcttctacggttcaggttaattgttactcacaggag 406  Q
    |||||||||||||||||||| ||||||||| || |||   |||||||||||||||||||||||||||||||||||||||| ||||||    
T  7807003 agaaggaaactacgagaatctaaggaaaagtggtttcattattcagcttcttcttctacggttcaggttaattgttactcccaggag 7806917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 60 - 156
Target Start/End: Complemental strand, 7807279 - 7807183
Alignment:
Q  60 ctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttcaaaactctctaaccaaatgaaccttaaagaaacaac 156  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  7807279 ctcccctccccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctccccttcaaaactctctaaccaaacgaaccttaaggaaacaac 7807183  T

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Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 25 - 120
Target Start/End: Original strand, 11455852 - 11455947
Alignment:
Q  25 tgaacttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||| ||||| | |||||||||||    
T  11455852 tgaacttataagagattttgctccccttcctctccctcccctccccttctaaaaattgaaccaaacacaacaaatttaaaatattccctccccttc 11455947  T

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Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 41 - 137
Target Start/End: Original strand, 25087319 - 25087415
Alignment:
Q  41 tttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttcaaaactctctaaccaaa 137  Q
    ||||||||||| |||  |||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||    
T  25087319 tttgctcccctcccttccccttcccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctcccctccaaaactctcgaaccaaa 25087415  T

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Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 70 - 149
Target Start/End: Original strand, 26142011 - 26142090
Alignment:
Q  70 cttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttcaaaactctctaaccaaatgaaccttaaag 149  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||| ||||||||||||| |||||    
T  26142011 cttctaaaaattgaaccaaacacttcaaattaaaaatcttccctcccctccaaaactctcgaaccaaatgaaccctaaag 26142090  T

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Target: chr6; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 69 - 142
Target Start/End: Original strand, 25510714 - 25510787
Alignment:
Q  69 ccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttcaaaactctctaaccaaatgaac 142  Q
    |||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||    
T  25510714 ccttctaaaaattgaatcaaacacttcaaattaaaaatcttccctccccttcaaaactctcgaaccaaatgaac 25510787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 2523774 - 2523695
Alignment:
Q  41 tttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    ||||||||||| ||   |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2523774 tttgctcccctcccctccccttcccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctccccttc 2523695  T

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Target: chr6; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 5064210 - 5064289
Alignment:
Q  41 tttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    ||||||||||| ||   |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5064210 tttgctcccctcccctccccttcccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctccccttc 5064289  T

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Target: chr6; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 29919156 - 29919235
Alignment:
Q  41 tttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    ||||||||||| ||   |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29919156 tttgctcccctcccctccccttcccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctccccttc 29919235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 30592545 - 30592466
Alignment:
Q  41 tttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    ||||||||||| ||   |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30592545 tttgctcccctcccctccccttcccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctccccttc 30592466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 41 - 118
Target Start/End: Complemental strand, 10838907 - 10838830
Alignment:
Q  41 tttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctcccct 118  Q
    ||||||||||| ||   |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10838907 tttgctcccctcccctccccttcccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctcccct 10838830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 116
Target Start/End: Original strand, 20219723 - 20219804
Alignment:
Q  35 agggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccc 116  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||   ||||| ||||| |||||||||    
T  20219723 agggattttgctccccttcctctccctcccctcccgttctaaaaattgaaccaagcacaaaaaatttaaaatatcccctccc 20219804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 116
Target Start/End: Original strand, 22113748 - 22113829
Alignment:
Q  35 agggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccc 116  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||   ||||| ||||| |||||||||    
T  22113748 agggattttgctccccttcctctccctcccctcccgttctaaaaattgaaccaagcacaaaaaatttaaaatatcccctccc 22113829  T

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Target: chr6; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 12977646 - 12977586
Alignment:
Q  58 ccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctcccct 118  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||    
T  12977646 ccctcccctccccttctaaaaattgaaccaaacacttgaaattaaaaatctccccttccct 12977586  T

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Target: chr6; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 34783832 - 34783911
Alignment:
Q  41 tttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    ||||||||||| ||   |||| |||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  34783832 tttgctcccctcccctccccttcccttcccttctaaaaattgaaccaaatacttcaaattaaaaatctcccctccccttc 34783911  T

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Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 13013611 - 13013551
Alignment:
Q  58 ccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctcccct 118  Q
    |||||||||||| |||||||| ||||||||||||||  |||||||||||||| ||||||||    
T  13013611 ccctcccctccctttctaaaagttgaaccaaacacttgaaattaaaaatctctcctcccct 13013551  T

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Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 302
Target Start/End: Original strand, 10415511 - 10415559
Alignment:
Q  253 gccttttagtataaatagcaaccaaattatacgattggagaatttattca 302  Q
    ||||||||||||||||||||| ||| |||||| ||||||||||| |||||    
T  10415511 gccttttagtataaatagcaa-caagttatacaattggagaattgattca 10415559  T

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Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 25 - 120
Target Start/End: Original strand, 1752036 - 1752131
Alignment:
Q  25 tgaacttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||| ||||| | |||||||||||    
T  1752036 tgaacttataagggattttgctccccttcctctccctcccctccccttctaaaaattgaaccaaacacaacaaatttaaaatattccctccccttc 1752131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 25 - 120
Target Start/End: Complemental strand, 11726010 - 11725915
Alignment:
Q  25 tgaacttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||| ||||| | |||||||||||    
T  11726010 tgaacttataagggattttgctccccttcctctccctcccctccccttctaaaaattgaaccaaacacaacaaatttaaaatattccctccccttc 11725915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 25 - 120
Target Start/End: Original strand, 2956268 - 2956363
Alignment:
Q  25 tgaacttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||  |||||| ||| | | |||||||||||    
T  2956268 tgaacttataagggattttgctctccttcctctccctcccctccccttctaaaaattgaaccaaacacaacaaattcaaagtattccctccccttc 2956363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 669525 - 669446
Alignment:
Q  58 ccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttcaaaactctctaaccaaa 137  Q
    |||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||    
T  669525 cccttcccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctcccctccaaaactctcgaaccaaa 669446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 2851493 - 2851568
Alignment:
Q  45 ctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    ||||||||||  ||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2851493 ctccccttcccttcccttcccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctccccttc 2851568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 16617806 - 16617743
Alignment:
Q  29 cttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacac 92  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16617806 cttatgagggattttgctccccttcctctccctcccctccccttctaaaaattgaaccaaacac 16617743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 21119712 - 21119791
Alignment:
Q  41 tttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    ||||||||||| |||  |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21119712 tttgctcccctcccttccccttcccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctccccttc 21119791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 41 - 118
Target Start/End: Complemental strand, 41308014 - 41307937
Alignment:
Q  41 tttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctcccct 118  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||| |||  ||||||||||||||| ||||||||    
T  41308014 tttgctccccttcccttccctcccctccccttctaaaaattgaaccaatcacatcaaattaaaaatctctcctcccct 41307937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 35859033 - 35859093
Alignment:
Q  60 ctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35859033 ctccccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctccccttc 35859093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 10642329 - 10642250
Alignment:
Q  41 tttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    ||||||||||| ||   |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10642329 tttgctcccctcccctccccttcccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctccccttc 10642250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 30984953 - 30984874
Alignment:
Q  41 tttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    ||||||||||| ||   |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30984953 tttgctcccctcccctccccttcccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctccccttc 30984874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 15295479 - 15295419
Alignment:
Q  58 ccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctcccct 118  Q
    |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15295479 cccttcccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctcccct 15295419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 9617025 - 9617104
Alignment:
Q  41 tttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    ||||||||||| ||   |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  9617025 tttgctcccctcccctccccttcccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctccccttcccttc 9617104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 18672818 - 18672756
Alignment:
Q  30 ttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacac 92  Q
    |||| ||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||    
T  18672818 ttatgagggattttactccccttcctctccctcccctcctcttctaaaaattgaaccaaacac 18672756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 35384863 - 35384917
Alignment:
Q  38 gattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacac 92  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||| |||||||    
T  35384863 gattttactccccttcctctccctcccctccccttctaaaaattgaatcaaacac 35384917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 30404159 - 30404109
Alignment:
Q  35 agggattttgctccccttcctatccctcccctccccttctaaaaattgaac 85  Q
    |||||||||| |||||||||| |||||| | ||||||||||||||||||||    
T  30404159 agggattttgttccccttcctctccctctcatccccttctaaaaattgaac 30404109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 125
Target Start/End: Original strand, 37276674 - 37276763
Alignment:
Q  29 cttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttcaaaac 125  Q
    ||||| ||||||||||||||||||||| ||||       |||||||||||| ||||||||||||  |||||| ||||| | |||||||| |||||||    
T  37276674 cttatgagggattttgctccccttcctctccc-------cccttctaaaaaatgaaccaaacacaacaaatttaaaatattccctccccatcaaaac 37276763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 116
Target Start/End: Complemental strand, 10329161 - 10329077
Alignment:
Q  27 aacttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccc 116  Q
    ||||||||| | |||||||||||||||    |||| ||||||||||||||||||||||||||| ||  |||||| ||||| | |||||||    
T  10329161 aacttataaagaattttgctccccttc----ccct-ccctccccttctaaaaattgaaccaaatacaacaaatttaaaatattccctccc 10329077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 44118507 - 44118414
Alignment:
Q  25 tgaacttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctcccct 118  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||| ||||| | |||||||||    
T  44118507 tgaacttataagggattttgctccccttcctctccctcccctccccttctaaaaattgaaccaaacacaacaaatttaaaatattccctcccct 44118414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 1828630 - 1828723
Alignment:
Q  25 tgaacttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctcccct 118  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||   ||||| ||||| | |||||||||    
T  1828630 tgaacttataagggattttgctccccttcctctccctcccctccccttctaaaaattgaaccaaacacaataaatttaaaatattccctcccct 1828723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 25 - 120
Target Start/End: Original strand, 47646135 - 47646230
Alignment:
Q  25 tgaacttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||   ||||| ||||| | |||||||||||    
T  47646135 tgaacttataagggattttgctccccttcctctccctcccctcccattctaaaaattgaaccaaacacaagaaatttaaaatattccctccccttc 47646230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 29 - 118
Target Start/End: Complemental strand, 12313305 - 12313216
Alignment:
Q  29 cttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctcccct 118  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||| ||||| | |||||||||    
T  12313305 cttatgagggattttgctccccttcctctccctcccctccccttctaaaaattgaaccaaacacaacaaatttaaaatattccctcccct 12313216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 518284 - 518222
Alignment:
Q  58 ccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  518284 ccctccccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctccccttc 518222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 224 - 351
Target Start/End: Complemental strand, 19318098 - 19317969
Alignment:
Q  224 ttggtttggaccttgggcttgttgtgtgagccttttagtataaatagcaaccaaattatacgattggaga---atttattcaatcccttagctatgaaga 320  Q
    ||||||||| |||||||||||||| ||| | || |||||||||||||||||||| |||||| ||||||||   ||| ||||| ||| | ||||||||| |    
T  19318098 ttggtttgggccttgggcttgttgggtg-gtctattagtataaatagcaaccaagttatacaattggagaattattgattcattccttcagctatgaaaa 19318000  T
Q  321 aaagaaggaaactacgagaatcgaaggaaaa 351  Q
    |||||||| ||| ||||||||||||| ||||    
T  19317999 aaagaagggaacaacgagaatcgaagaaaaa 19317969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 17707160 - 17707081
Alignment:
Q  41 tttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    ||||||||||| ||   |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  17707160 tttgctcccctcccctccccttcccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctccccttc 17707081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 32813019 - 32812940
Alignment:
Q  41 tttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    ||||||||||| ||   |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32813019 tttgctcccctcccctccccttcccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctccccttc 32812940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 37468280 - 37468359
Alignment:
Q  41 tttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    ||||||||||| ||   |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37468280 tttgctcccctcccctccccttcccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctccccttc 37468359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 33119370 - 33119432
Alignment:
Q  27 aacttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaa 89  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||    
T  33119370 aacttataagggattttgctccccttcctctccctcccttccccttctaaaagttgaaccaaa 33119432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 25676625 - 25676686
Alignment:
Q  58 ccctcccctcccc-ttctaaaaattgaaccaaacactccaaattaaaaatctcccctcccct 118  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25676625 ccctcccctcccccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctcccct 25676686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 16730088 - 16730009
Alignment:
Q  41 tttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    ||||||||||| ||   |||| |||| |||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  16730088 tttgctcccctcccctccccttcccttcccttctaaaaattgaaccaaacacttcatattaaaaatctcccctccccttc 16730009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 45296293 - 45296214
Alignment:
Q  41 tttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    ||||||||||| ||   |||| |||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  45296293 tttgctcccctcccctccccttcccttcccttctaaaaatagaaccaaacacttcaaattaaaaatctcccctccccttc 45296214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 33618493 - 33618555
Alignment:
Q  67 ccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttcaaaactctc 129  Q
    ||||| ||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||    
T  33618493 cccctcctaaaaattgatccaaacacttcaaattaaaaatctcccctcccctccaaaactctc 33618555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 12848087 - 12848147
Alignment:
Q  58 ccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctcccct 118  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||| ||| ||||||||    
T  12848087 ccctcccttccccttctaaaaattgaaccaaacacttcaaattaaaaaactctcctcccct 12848147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 66 - 137
Target Start/End: Complemental strand, 557662 - 557591
Alignment:
Q  66 tccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttcaaaactctctaaccaaa 137  Q
    |||||||||||||||||||| ||||||| ||||||||||||  |||| ||||| |||||||||| |||||||    
T  557662 tccccttctaaaaattgaacaaaacacttcaaattaaaaattcccccgcccctccaaaactctcgaaccaaa 557591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 4582186 - 4582265
Alignment:
Q  41 tttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    ||||||||||| ||   |||| |||| |||||||||||||||||||||||||| ||||||||||||||  ||||||||||    
T  4582186 tttgctcccctcccctccccttcccttcccttctaaaaattgaaccaaacacttcaaattaaaaatcttacctccccttc 4582265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 60 - 137
Target Start/End: Complemental strand, 7792135 - 7792053
Alignment:
Q  60 ctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctc-----ccctccccttcaaaactctctaaccaaa 137  Q
    |||||||||||||||||||||||||  ||||||| ||||||||| |||||     |||||||||||||||||||| |||||||    
T  7792135 ctcccctccccttctaaaaattgaagtaaacacttcaaattaaagatctctccttccctccccttcaaaactctcgaaccaaa 7792053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 18927979 - 18928039
Alignment:
Q  58 ccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctcccct 118  Q
    ||||||||| ||||| |||||||||||| ||||||| ||||||||||||||||||| ||||    
T  18927979 ccctccccttcccttataaaaattgaacaaaacacttcaaattaaaaatctccccttccct 18928039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 21146205 - 21146157
Alignment:
Q  58 ccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaat 106  Q
    |||||||||||| |||||||||||||| |||||||| ||||||||||||    
T  21146205 ccctcccctccctttctaaaaattgaatcaaacacttcaaattaaaaat 21146157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 42027357 - 42027315
Alignment:
Q  39 attttgctccccttcctatccctcccctccccttctaaaaatt 81  Q
    ||||||||||||||||| ||||||||||||||||| |||||||    
T  42027357 attttgctccccttcctctccctcccctccccttcaaaaaatt 42027315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 7495466 - 7495512
Alignment:
Q  60 ctcccctccccttctaaaaattgaaccaaacactccaaattaaaaat 106  Q
    |||||||||| ||||||||| ||||||||||||  ||||||||||||    
T  7495466 ctcccctccctttctaaaaaatgaaccaaacacgtcaaattaaaaat 7495512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 89
Target Start/End: Complemental strand, 29008057 - 29008028
Alignment:
Q  60 ctcccctccccttctaaaaattgaaccaaa 89  Q
    ||||||||||||||||||||||||||||||    
T  29008057 ctcccctccccttctaaaaattgaaccaaa 29008028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 21373369 - 21373276
Alignment:
Q  25 tgaacttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctcccct 118  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||| ||||| | |||||||||    
T  21373369 tgaacttataagggattttgctccccttcctctccctcccctccccttctaaaaattgaaccaaacacaacaaattcaaaatattccctcccct 21373276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 37661364 - 37661300
Alignment:
Q  25 tgaacttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaa 89  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  37661364 tgaacttataagggattttgctccccttcctctccctccactccccttctaaaaattgaaccaaa 37661300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 15545200 - 15545263
Alignment:
Q  29 cttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacac 92  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15545200 cttatgagggattttgctccccttcctctccctcccctccccttctaaaaattgaaccaaacac 15545263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 44565748 - 44565810
Alignment:
Q  30 ttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacac 92  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44565748 ttatgagggattttgctccccttcctctccctcccctccccttctaaaaattgaaccaaacac 44565810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 2326225 - 2326162
Alignment:
Q  29 cttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacac 92  Q
    ||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  2326225 cttatgagggattttgctccccttcctctccctcccctccccttttaaaaattgaaccaaacac 2326162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 29744130 - 29744193
Alignment:
Q  29 cttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacac 92  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  29744130 cttatgagggattttgctccccttcctctccctcccctccccttctaaaaattgaagcaaacac 29744193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 33506408 - 33506479
Alignment:
Q  35 agggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaat 106  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||  |||||| |||||    
T  33506408 agggattttgctccccttcctctccctcccctccccttataaaaattgaaccaaacacaacaaatttaaaat 33506479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 42887347 - 42887410
Alignment:
Q  29 cttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacac 92  Q
    ||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  42887347 cttatgagggattttgctccccttcctctccctcctctccccttctaaaaattgaaccaaacac 42887410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 43055310 - 43055231
Alignment:
Q  41 tttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    ||||||||||| ||   |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43055310 tttgctcccctcccctccccttcccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctccccttc 43055231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 50579566 - 50579504
Alignment:
Q  58 ccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  50579566 cccttcccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctccccttc 50579504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 11385545 - 11385608
Alignment:
Q  29 cttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacac 92  Q
    ||||| ||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||    
T  11385545 cttatgagggattttgctccccttcctctccctcccatccccttctaaaatttgaaccaaacac 11385608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 51621261 - 51621198
Alignment:
Q  29 cttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacac 92  Q
    ||||| |||||||| | |||||||||| || |||||||||||||||||||||||||||||||||    
T  51621261 cttatgagggatttcgttccccttcctctctctcccctccccttctaaaaattgaaccaaacac 51621198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 43637856 - 43637914
Alignment:
Q  60 ctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctcccct 118  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||| ||| ||||    
T  43637856 ctccccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctcaccttccct 43637914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 25699700 - 25699653
Alignment:
Q  68 cccttctaaaaattgaaccaaacactccaaattaaaaatctcccctcc 115  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||    
T  25699700 cccttctaaaaattgaaccaaacacttcaaattaaaaatttcccctcc 25699653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 125
Target Start/End: Complemental strand, 17306983 - 17306893
Alignment:
Q  35 agggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttcaaaac 125  Q
    ||||||||||||| ||||||| |||||| | ||| |||||||||||||| ||||||||   ||| | ||||| |  |||||||||||||||    
T  17306983 agggattttgctcaccttcctctccctctcatcctcttctaaaaattgagccaaacacaaaaaagttaaaatatttcctccccttcaaaac 17306893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 92
Target Start/End: Original strand, 46833907 - 46833941
Alignment:
Q  58 ccctcccctccccttctaaaaattgaaccaaacac 92  Q
    |||||||||||||||||||||||||||||||||||    
T  46833907 ccctcccctccccttctaaaaattgaaccaaacac 46833941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 9398595 - 9398640
Alignment:
Q  60 ctcccctccccttctaaaaattgaaccaaacactccaaattaaaaa 105  Q
    |||||||||||||||| ||||||||||||||||  |||||| ||||    
T  9398595 ctcccctccccttctacaaattgaaccaaacacatcaaatttaaaa 9398640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 43589277 - 43589175
Alignment:
Q  18 caatcattgaacttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctcccc 117  Q
    |||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||  |||||| ||||| | ||||||||    
T  43589277 caataattgaacttataagtgattttgctccccttcctctccctcccctccccttctaaaaattaaaccaaacacaacaaatttaaaatattccctcccc 43589178  T
Q  118 ttc 120  Q
    |||    
T  43589177 ttc 43589175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 10356349 - 10356412
Alignment:
Q  29 cttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacac 92  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10356349 cttatgagggattttgctccccttcctctccctcccctccccttctaaaaattgaaccaaacac 10356412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 16256884 - 16256951
Alignment:
Q  25 tgaacttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacac 92  Q
    |||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  16256884 tgaaattataagggattttgctccccttcctctccctcccatccccttctaaaaattgaaccaaacac 16256951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 28809404 - 28809467
Alignment:
Q  29 cttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacac 92  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28809404 cttatgagggattttgctccccttcctctccctcccctccccttctaaaaattgaaccaaacac 28809467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 41759564 - 41759493
Alignment:
Q  58 ccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttcaaaactctc 129  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||    
T  41759564 ccctcccctctccttctaaaaattgaaccaaacacttcaaattaaaaatcttccctcccctccaaaactctc 41759493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 35 - 106
Target Start/End: Complemental strand, 34209820 - 34209749
Alignment:
Q  35 agggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaat 106  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||  |||||| |||||    
T  34209820 agggattttgctccccttcctctccctcccctcccattctaaaaattgaaccaaacacaacaaatttaaaat 34209749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 35733988 - 35733925
Alignment:
Q  29 cttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacac 92  Q
    ||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  35733988 cttatgagggattttgctccccttcctctacctcccctccccttctaaaaattgaaccaaacac 35733925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 37426343 - 37426422
Alignment:
Q  41 tttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    ||||||||||| ||   |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37426343 tttgctcccctcccctccccttcccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctccccttc 37426422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 42453205 - 42453126
Alignment:
Q  41 tttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    ||||||||||| ||   |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42453205 tttgctcccctcccctccccttcccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctccccttc 42453126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 12391931 - 12391988
Alignment:
Q  63 ccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  12391931 cccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctccccttc 12391988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 7758639 - 7758576
Alignment:
Q  29 cttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacac 92  Q
    ||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  7758639 cttatgagggattttactccccttcctctccctcccctccccttctaaaaattgaactaaacac 7758576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 35466727 - 35466648
Alignment:
Q  41 tttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    ||||||||||| ||   |||| |||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  35466727 tttgctcccctcccctccccttcccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctccccgccccttc 35466648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 45326496 - 45326552
Alignment:
Q  64 cctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||    
T  45326496 cctccccttctaaaaattaaaccaaacacttcaaattaaaaatctctcctccccttc 45326552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 66 - 148
Target Start/End: Complemental strand, 36213086 - 36212999
Alignment:
Q  66 tccccttctaaaaattgaaccaaacactccaaattaaaa-----atctcccctccccttcaaaactctctaaccaaatgaaccttaaa 148  Q
    |||||||||||||||||||||||||||| ||||||||||      ||||||||| |||||||||||||| ||||||| ||||| ||||    
T  36213086 tccccttctaaaaattgaaccaaacacttcaaattaaaattattctctcccctctccttcaaaactctcgaaccaaacgaaccctaaa 36212999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 68 - 118
Target Start/End: Complemental strand, 9302693 - 9302643
Alignment:
Q  68 cccttctaaaaattgaaccaaacactccaaattaaaaatctcccctcccct 118  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  9302693 cccttctaaaaattgaaccaaacgcttcaaattaaaaatctcccctcccct 9302643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 34041850 - 34041922
Alignment:
Q  34 aagggattttgctccccttcctatccc-tcccctccccttctaaaaattgaaccaaacactccaaattaaaaat 106  Q
    |||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||  |||||| |||||    
T  34041850 aagggattttgctcccct-cctctcccctcccctccccttctaaaaattgaaccaaacacatcaaatttaaaat 34041922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 43870946 - 43870874
Alignment:
Q  65 ctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttcaaaactctctaaccaaa 137  Q
    ||||| ||||||||||||||| ||||||| ||||||||||||||| | |||||| |||||| || ||||||||    
T  43870946 ctccctttctaaaaattgaactaaacacttcaaattaaaaatctctcatcccctccaaaaccctgtaaccaaa 43870874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 120
Target Start/End: Complemental strand, 17153469 - 17153410
Alignment:
Q  61 tcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    |||||| | |||||||||||| ||||||||||| |||||||||||| |||||||||||||    
T  17153469 tccccttctcttctaaaaattaaaccaaacacttcaaattaaaaatttcccctccccttc 17153410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 35860652 - 35860719
Alignment:
Q  41 tttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatct 108  Q
    ||||||||||| ||   |||| |||| |||||||||||||||||||||||||| ||||||||||||||    
T  35860652 tttgctcccctcccctccccttcccttcccttctaaaaattgaaccaaacacttcaaattaaaaatct 35860719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 28137530 - 28137580
Alignment:
Q  68 cccttctaaaaattgaaccaaacactccaaattaaaaatctcccctcccct 118  Q
    |||||||||||||||||||||||||| |||||||||||| |||||| ||||    
T  28137530 cccttctaaaaattgaaccaaacacttcaaattaaaaatttccccttccct 28137580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 13173648 - 13173697
Alignment:
Q  57 tccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaat 106  Q
    |||||||||||||||||||||||||||||||||||   ||||||||||||    
T  13173648 tccctcccctccccttctaaaaattgaaccaaacatgtcaaattaaaaat 13173697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 26275494 - 26275534
Alignment:
Q  66 tccccttctaaaaattgaaccaaacactccaaattaaaaat 106  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  26275494 tccccttctaaaaattgaaccaaacacttcaaattaaaaat 26275534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 31917015 - 31916955
Alignment:
Q  31 tataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaaca 91  Q
    |||||||||||||||| ||||  | ||||||||||| ||||| ||||||||||||||||||    
T  31917015 tataagggattttgcttccctctccatccctccccttcccttttaaaaattgaaccaaaca 31916955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 118
Target Start/End: Complemental strand, 37486269 - 37486218
Alignment:
Q  67 ccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctcccct 118  Q
    |||||||||||||||||||||| |||| |||||||||||| | |||||||||    
T  37486269 ccccttctaaaaattgaaccaatcacttcaaattaaaaatattccctcccct 37486218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 137
Target Start/End: Complemental strand, 38285740 - 38285662
Alignment:
Q  69 ccttctaaaaattgaaccaaacactccaaattaaaaat----------ctcccctccccttcaaaactctctaaccaaa 137  Q
    ||||||||||||| ||||||||||| ||||||||||||          ||||||||||||||||||||||| |||||||    
T  38285740 ccttctaaaaattaaaccaaacacttcaaattaaaaatattcactcccctcccctccccttcaaaactctcgaaccaaa 38285662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 102
Target Start/End: Complemental strand, 5616774 - 5616732
Alignment:
Q  60 ctcccctccccttctaaaaattgaaccaaacactccaaattaa 102  Q
    ||||||||| |||||||||||||||||||||||  ||||||||    
T  5616774 ctcccctcctcttctaaaaattgaaccaaacacgtcaaattaa 5616732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 39576497 - 39576451
Alignment:
Q  60 ctcccctccccttctaaaaattgaaccaaacactccaaattaaaaat 106  Q
    |||| |||||||||||||||||||||||||||   ||||||||||||    
T  39576497 ctccgctccccttctaaaaattgaaccaaacatatcaaattaaaaat 39576451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 145
Target Start/End: Complemental strand, 86025 - 85940
Alignment:
Q  60 ctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttcaaaactctctaaccaaatgaacctt 145  Q
    |||||||| |||||||||| ||||| |||||||  |||||||||||| |   ||||||| ||||| |||  ||||||||| |||||    
T  86025 ctcccctctccttctaaaatttgaatcaaacacgtcaaattaaaaatatttactcccctccaaaattcttgaaccaaatggacctt 85940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 2956675 - 2956768
Alignment:
Q  25 tgaacttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctcccct 118  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||   ||||| ||||| | |||||||||    
T  2956675 tgaacttataagggattttgctccccttcctctccctcccctccccttctaaaaattgaaccaaacacaagaaatttaaaatattccctcccct 2956768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 25 - 119
Target Start/End: Original strand, 43048617 - 43048711
Alignment:
Q  25 tgaacttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctcccctt 119  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||  |||||| ||||| | ||||||||||    
T  43048617 tgaacttataagggattttactccccttcctctccctcccctccccttctaaaaattgaatcaaacacaacaaatttaaaatattccctcccctt 43048711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 41 - 137
Target Start/End: Original strand, 12391716 - 12391812
Alignment:
Q  41 tttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttcaaaactctctaaccaaa 137  Q
    ||||||||||| ||   |||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||    
T  12391716 tttgctcccctcccctccccttcccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctcccctccaaaactctcgaaccaaa 12391812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 25 - 139
Target Start/End: Original strand, 36557776 - 36557896
Alignment:
Q  25 tgaacttataagggattttgctccccttcctatccctcccct-ccccttctaaaaattgaaccaaacactccaaattaaaaat-----ctcccctcccct 118  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||   ||||| |||||     |||||||||||     
T  36557776 tgaacttataagggattttgctccccttcctctccctcccctcccccttctaaaaattgaaccaaacacaagaaatttaaaatattccctcccctcccca 36557875  T
Q  119 tcaaaactctctaaccaaatg 139  Q
    ||||||||| | |||||||||    
T  36557876 tcaaaactcccgaaccaaatg 36557896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 6602429 - 6602362
Alignment:
Q  25 tgaacttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacac 92  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6602429 tgaacttatgagggattttgctccccttcctctccctcccctccccttctaaaaattgaaccaaacac 6602362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 6677882 - 6677815
Alignment:
Q  25 tgaacttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacac 92  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6677882 tgaacttatgagggattttgctccccttcctctccctcccctccccttctaaaaattgaaccaaacac 6677815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 26758504 - 26758443
Alignment:
Q  57 tccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctcccct 118  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26758504 tccctcccctccccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctcccct 26758443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 30591338 - 30591259
Alignment:
Q  41 tttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    ||||||||||| ||   |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30591338 tttgctcccctcccctccccttcccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctccccttc 30591259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 30887330 - 30887409
Alignment:
Q  41 tttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    ||||||||||| ||   |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30887330 tttgctcccctcccctccccttcccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctccccttc 30887409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 58 - 120
Target Start/End: Original strand, 4599440 - 4599502
Alignment:
Q  58 ccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  4599440 ccctccccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctcctctccccttc 4599502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 66 - 137
Target Start/End: Original strand, 2378514 - 2378585
Alignment:
Q  66 tccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttcaaaactctctaaccaaa 137  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||| | ||||| |||| |||||||    
T  2378514 tccccttctaaaaattgaactaaacacttcaaattaaaaatctcccctcccttccaaaattctcgaaccaaa 2378585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 43634344 - 43634407
Alignment:
Q  25 tgaacttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaa 88  Q
    ||||||||| || |||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  43634344 tgaacttatgagagattttgctccccttcctctcccttccctccccttctaaaaattgaaccaa 43634407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 6575654 - 6575592
Alignment:
Q  58 ccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    |||| |||| |||||||||||||||||||||||||| |||||||||||||||||  |||||||    
T  6575654 cccttcccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctccctcccccttc 6575592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 41 - 123
Target Start/End: Complemental strand, 31960432 - 31960350
Alignment:
Q  41 tttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttcaaa 123  Q
    ||||||||||| ||   |||| |||| |||||||||||||||||||||| ||| ||| |||||||||||||||||||| ||||    
T  31960432 tttgctcccctcccctccccttcccttcccttctaaaaattgaaccaaatacttcaacttaaaaatctcccctcccctccaaa 31960350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 21594620 - 21594563
Alignment:
Q  35 agggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacac 92  Q
    ||||||||||||||||||||| |||||||| |||||||||||| |||||| |||||||    
T  21594620 agggattttgctccccttcctctccctcccatccccttctaaatattgaatcaaacac 21594563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 65 - 124
Target Start/End: Complemental strand, 43748778 - 43748714
Alignment:
Q  65 ctccccttctaaaaattgaaccaaacactccaaattaaaa-----atctcccctccccttcaaaa 124  Q
    ||||||||||||||||||||||||||||| ||||||||||     ||||||||||||||||||||    
T  43748778 ctccccttctaaaaattgaaccaaacacttcaaattaaaaatattatctcccctccccttcaaaa 43748714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 34740960 - 34741011
Alignment:
Q  86 caaacactccaaattaaaaatctcccctccccttcaaaactctctaaccaaa 137  Q
    |||||||| |||||||||||||||||||||||| |||||||||| |||||||    
T  34740960 caaacacttcaaattaaaaatctcccctcccctccaaaactctcgaaccaaa 34741011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 40978292 - 40978359
Alignment:
Q  39 attttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaat 106  Q
    ||||||||| ||||||| |||||||| |||||||||||||||| ||||||||||  |||||| |||||    
T  40978292 attttgctcaccttcctctccctcccatccccttctaaaaattaaaccaaacacaacaaatttaaaat 40978359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 137
Target Start/End: Complemental strand, 14123555 - 14123479
Alignment:
Q  61 tcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttcaaaactctctaaccaaa 137  Q
    |||||| || |||| |||||||||| ||||||  |||||||||| ||||||||||| | ||||| |||| |||||||    
T  14123555 tccccttccattcttaaaattgaactaaacacatcaaattaaaattctcccctcccttccaaaaatctcgaaccaaa 14123479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 102
Target Start/End: Original strand, 12110558 - 12110597
Alignment:
Q  63 ccctccccttctaaaaattgaaccaaacactccaaattaa 102  Q
    |||||||||||||||||||||||||||||| || ||||||    
T  12110558 ccctccccttctaaaaattgaaccaaacacgccgaattaa 12110597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 46484913 - 46484820
Alignment:
Q  25 tgaacttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctcccct 118  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||  |||||| ||||| | |||||||||    
T  46484913 tgaacttataagggattttgctccccttcctctccctcccctccccttctaaaaattaaaccaaacacaacaaatttaaaatattccctcccct 46484820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 19286287 - 19286208
Alignment:
Q  41 tttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    ||||||||||| ||   |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19286287 tttgctcccctcccctccccttccctccccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctccccttc 19286208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 40997089 - 40997010
Alignment:
Q  41 tttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    ||||||||||||||   |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40997089 tttgctccccttccctccccttcccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctccccttc 40997010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 58 - 120
Target Start/End: Original strand, 14985 - 15047
Alignment:
Q  58 ccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14985 ccctccccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctccccttc 15047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 21913372 - 21913451
Alignment:
Q  41 tttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    ||||||||||| ||   |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21913372 tttgctcccctcccctccccttcccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctccccttc 21913451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 58 - 120
Target Start/End: Original strand, 41950429 - 41950491
Alignment:
Q  58 ccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  41950429 cccttcccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctccccttc 41950491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 41 - 118
Target Start/End: Complemental strand, 44926637 - 44926560
Alignment:
Q  41 tttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctcccct 118  Q
    ||||||||||| ||  ||||| || |||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  44926637 tttgctcccctccccttcccttccatccccttctaaaaattgaaccaaacacttcaaattaaaaatctccccttccct 44926560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 50902246 - 50902325
Alignment:
Q  41 tttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    ||||||||||| ||   |||| |||| |||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  50902246 tttgctcccctcccctccccttcccttcccttctaaaaattgaaccaaacacttcagattaaaaatctcccctccccttc 50902325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 14600254 - 14600194
Alignment:
Q  58 ccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctcccct 118  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||| || ||||||||    
T  14600254 ccctcccctccccttcaaaaaattgaaccaaacacttcaaattaaaaatttctcctcccct 14600194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 5409664 - 5409606
Alignment:
Q  60 ctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctcccct 118  Q
    ||||| ||||||||||||||||||| |||||| | |||||||||||||| |||||||||    
T  5409664 ctcccttccccttctaaaaattgaatcaaacaattcaaattaaaaatcttccctcccct 5409606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 33047740 - 33047686
Alignment:
Q  58 ccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccc 112  Q
    |||| |||| |||||||||||||||||||||||||| ||||||||||||| ||||    
T  33047740 cccttcccttcccttctaaaaattgaaccaaacacttcaaattaaaaatcccccc 33047686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 137
Target Start/End: Complemental strand, 42168237 - 42168154
Alignment:
Q  59 cctcccctccccttctaaaaattgaaccaaacactccaaattaaaaat-----ctcccctccccttcaaaactctctaaccaaa 137  Q
    |||||||| || ||||| | ||||||||||||||  ||||||||||||     ||||||||||||||||||||||| |||||||    
T  42168237 cctcccctacctttctacagattgaaccaaacacatcaaattaaaaatattctctcccctccccttcaaaactctcgaaccaaa 42168154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 18364454 - 18364396
Alignment:
Q  60 ctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctcccct 118  Q
    ||||| |||||| |||||||||||| |||||| | |||||||||||||| |||||||||    
T  18364454 ctcccatcccctcctaaaaattgaatcaaacatttcaaattaaaaatctaccctcccct 18364396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 21458789 - 21458838
Alignment:
Q  69 ccttctaaaaattgaaccaaacactccaaattaaaaatctcccctcccct 118  Q
    |||||||||||||||| |||||||| |||||||||||||| || ||||||    
T  21458789 ccttctaaaaattgaatcaaacacttcaaattaaaaatcttccatcccct 21458838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 104868 - 104935
Alignment:
Q  39 attttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaat 106  Q
    ||||||||||||| |   ||| ||| |||||||||||||||||||||||||||   ||||||||||||    
T  104868 attttgctcccctcctcttccttcctctccccttctaaaaattgaaccaaacatgtcaaattaaaaat 104935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 25 - 125
Target Start/End: Complemental strand, 42739022 - 42738922
Alignment:
Q  25 tgaacttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttcaaaa 124  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||   ||||| ||||| | |||||||| ||||||    
T  42739022 tgaacttataagggattttgctccccttcctctccctcccctccctttctaaaaattgaaccaaacacaagaaatttaaaatattccctccccatcaaaa 42738923  T
Q  125 c 125  Q
    |    
T  42738922 c 42738922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 38023980 - 38023913
Alignment:
Q  25 tgaacttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacac 92  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  38023980 tgaacttatgagggattttgctccccttcctctccctcccctccccttctaaaaattgaaccaaacac 38023913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 49283537 - 49283460
Alignment:
Q  29 cttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaat 106  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||| |||||    
T  49283537 cttatgagggattttgctccccttcctctccctcccctccccttctaaaaattgaaccaaacacaacaaatttaaaat 49283460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 19914546 - 19914473
Alignment:
Q  64 cctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttcaaaactctctaaccaaa 137  Q
    ||||||||| |||||||||||||||||||| |||||||||||||| ||||||||| |||||||||| |||||||    
T  19914546 cctccccttttaaaaattgaaccaaacacttcaaattaaaaatcttccctcccctccaaaactctcgaaccaaa 19914473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 1921884 - 1921955
Alignment:
Q  35 agggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaat 106  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||  |||||| |||||    
T  1921884 agggattttgctccccttcctctcactcccctccccttctaaaaattgaaccaaacacaacaaatttaaaat 1921955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 26496662 - 26496583
Alignment:
Q  41 tttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    ||||||||||| ||   |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26496662 tttgctcccctcccctccccttcccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctccccttc 26496583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 36668336 - 36668415
Alignment:
Q  41 tttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    ||||||||||| ||   |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  36668336 tttgctcccctcccctccccttcccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctccccttc 36668415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 37564456 - 37564519
Alignment:
Q  29 cttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacac 92  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37564456 cttatgagggaatttgctccccttcctctccctcccctccccttctaaaaattgaaccaaacac 37564519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 58 - 120
Target Start/End: Original strand, 3151130 - 3151192
Alignment:
Q  58 ccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3151130 cccttcccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctccccttc 3151192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 20254894 - 20254952
Alignment:
Q  58 ccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccc 116  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  20254894 ccctcccctccccttctaaaaattgaaccaaacacttcaaattaaaaatctcctctccc 20254952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 6884483 - 6884420
Alignment:
Q  29 cttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacac 92  Q
    ||||| ||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  6884483 cttatgaggaattttgctccccttcctctccctcccctcccctcctaaaaattgaaccaaacac 6884420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 35 - 106
Target Start/End: Complemental strand, 22443180 - 22443109
Alignment:
Q  35 agggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaat 106  Q
    ||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||  |||||| |||||    
T  22443180 agggattttgctcaccttcctctccctcccatccccttctaaaaattgaaccaaacacaacaaatttaaaat 22443109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 29191688 - 29191751
Alignment:
Q  29 cttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacac 92  Q
    ||||| || |||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  29191688 cttatgagagattttgctccccttcctctccctctcctccccttctaaaaattgaaccaaacac 29191751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 60 - 114
Target Start/End: Original strand, 21232971 - 21233025
Alignment:
Q  60 ctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctc 114  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  21232971 ctcccctccgcttctaaaaattgaaccaaacacttcaaattaaaaatctcccctc 21233025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 34150674 - 34150600
Alignment:
Q  41 tttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctcc 115  Q
    ||||||||||| ||   |||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  34150674 tttgctcccctcccctccccttcccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctcc 34150600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 29 - 115
Target Start/End: Original strand, 41279822 - 41279908
Alignment:
Q  29 cttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctcc 115  Q
    ||||| ||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||| ||   ||||| ||||| ||||||||    
T  41279822 cttatgagggattttgctctccttcctctccctcccctctccttctaaaaattgaaccaaatacaaaaaatttaaaatatcccctcc 41279908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 47498288 - 47498345
Alignment:
Q  35 agggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacac 92  Q
    ||||||||||||||||||||| | ||| |||||| |||||||||||||||||||||||    
T  47498288 agggattttgctccccttccttttccttccctcctcttctaaaaattgaaccaaacac 47498345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 58 - 143
Target Start/End: Original strand, 35234290 - 35234380
Alignment:
Q  58 ccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaa-----tctcccctccccttcaaaactctctaaccaaatgaacc 143  Q
    ||||||| | ||||||||||||||||||||||||| | ||||||||||     |||||| ||||||||||||||||| || ||||| ||||    
T  35234290 ccctcccattcccttctaaaaattgaaccaaacacgcaaaattaaaaatattctctcccttccccttcaaaactctcgaatcaaattaacc 35234380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 135
Target Start/End: Original strand, 50179854 - 50179930
Alignment:
Q  58 ccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttcaaaactctctaacca 135  Q
    |||| |||||||||||||||||||||| |||||| | |||||||||||||| || ||||||  ||||||||| |||||    
T  50179854 cccttccctccccttctaaaaattgaa-caaacatttcaaattaaaaatcttccttcccctcaaaaactctcgaacca 50179930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 49318710 - 49318770
Alignment:
Q  61 tcccctccccttctaaaaattgaaccaaacactccaaatt-aaaaatctcccctccccttc 120  Q
    |||||| |||||||||||||| ||||||||||| |||||| |||||| |||||||||||||    
T  49318710 tccccttcccttctaaaaattaaaccaaacacttcaaattaaaaaatatcccctccccttc 49318770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 108
Target Start/End: Complemental strand, 5092295 - 5092261
Alignment:
Q  74 taaaaattgaaccaaacactccaaattaaaaatct 108  Q
    |||||||||||||||||||| ||||||||||||||    
T  5092295 taaaaattgaaccaaacacttcaaattaaaaatct 5092261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 92
Target Start/End: Original strand, 55874265 - 55874294
Alignment:
Q  63 ccctccccttctaaaaattgaaccaaacac 92  Q
    ||||||||||||||||||||||||||||||    
T  55874265 ccctccccttctaaaaattgaaccaaacac 55874294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 16335748 - 16335796
Alignment:
Q  70 cttctaaaaattgaaccaaacactccaaattaaaaatctcccctcccct 118  Q
    ||||||||||||||| |||||||  || |||||||||||| ||||||||    
T  16335748 cttctaaaaattgaatcaaacacgtcatattaaaaatctctcctcccct 16335796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 27552780 - 27552820
Alignment:
Q  63 ccctccccttctaaaaattgaaccaaacactccaaattaaa 103  Q
    |||||||||| ||||||||||| |||||||| |||||||||    
T  27552780 ccctccccttttaaaaattgaatcaaacacttcaaattaaa 27552820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0735 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0735
Description:

Target: scaffold0735; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 300 - 363
Alignment:
Q  29 cttataagggattttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacac 92  Q
    ||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  300 cttatgagggattttgctccccttcctctccctcctctccccttctaaaaattgaaccaaacac 363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 1158 - 1237
Alignment:
Q  41 tttgctccccttcctatccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    ||||||||||| ||   |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1158 tttgctcccctcccctccccttcccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctccccttc 1237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 58 - 120
Target Start/End: Original strand, 95424 - 95486
Alignment:
Q  58 ccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  95424 cccttcccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctccccttc 95486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 5739 - 5684
Alignment:
Q  60 ctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctcc 115  Q
    |||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||    
T  5739 ctcccctctccttctaaaaattcaaccaaacacttcaaattaaaaatctcccctcc 5684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0608 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 135
Target Start/End: Original strand, 314 - 390
Alignment:
Q  58 ccctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttcaaaactctctaacca 135  Q
    |||| |||||||||||||||||||||| |||||| | |||||||||||||| || ||||||  ||||||||| |||||    
T  314 cccttccctccccttctaaaaattgaa-caaacatttcaaattaaaaatcttccttcccctcaaaaactctcgaacca 390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 41569 - 41627
Alignment:
Q  60 ctcccctccccttctaaaaattgaaccaaacactccaaattaaaaatctcccctccccttc 120  Q
    |||||||| ||||| |||||| |||||||||||| |||||| |||||||||||||||||||    
T  41569 ctcccctctccttcgaaaaat-gaaccaaacacttcaaatt-aaaatctcccctccccttc 41627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 57112 - 57064
Alignment:
Q  70 cttctaaaaattgaaccaaacactccaaattaaaaatctcccctcccct 118  Q
    ||||||||||||||| |||||||  || |||||||||||| ||||||||    
T  57112 cttctaaaaattgaatcaaacacgtcatattaaaaatctctcctcccct 57064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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