View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21036_low_18 (Length: 416)
Name: NF21036_low_18
Description: NF21036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21036_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 4 - 405
Target Start/End: Complemental strand, 19166852 - 19166429
Alignment:
| Q |
4 |
tgtattgataccaacgtttcctcgtgctaaccgttgccaccaaacctgaaccggcccaatctctgtcttcttcagcaaactggtactcaatcaccccctt |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19166852 |
tgtattgataccaacgtttcctcgtgctaaccgttgccaccaaacctgaaccggcccaatctctgtcttcttcagcaaactggtactcaatcaccccctt |
19166753 |
T |
|
| Q |
104 |
attaatcaaattgccctctgaaccagtcagtacaaagttctcaggttgttccaaatcctcatccaattcgacggatttaata------------------ |
185 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
19166752 |
attaatcaaattgccctctgaaccagtcagtacaaagttctcaggttgttccaaatcctcatccaaatcgacggatttaataaccttcccgtcgtcagca |
19166653 |
T |
|
| Q |
186 |
---gtaaggacgacgacttccttgttctttggaactgccatccctccggcaccctccttcaataactgtgtctgctgcccatcatacccc-atccgaacc |
281 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||| |
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| T |
19166652 |
atagtaaggacgacgacttccttgttctttggaactgccatccctccggcaccctccttcaataaccgtgtctgctgcccatcatacccccatcagaacc |
19166553 |
T |
|
| Q |
282 |
tccttctcagctccactgtcaccgttatccctcaccacgcctttcctgaacctcacactttttctccctccccgcttcttccccttacaaccgtcgcagc |
381 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19166552 |
tccttctcagccccactatcaccgttatccctcaccacgcctttcctgaacctcgcactttttctccctccccgcttcttccccttacaaccgtcgcagc |
19166453 |
T |
|
| Q |
382 |
tccctcacgctttctcacattctt |
405 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
19166452 |
tccctcacgctttctcacattctt |
19166429 |
T |
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