View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21036_low_24 (Length: 362)
Name: NF21036_low_24
Description: NF21036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21036_low_24 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 17 - 343
Target Start/End: Complemental strand, 33442087 - 33441761
Alignment:
| Q |
17 |
acctgtgttaactagtggacaagataaaattataattacaacctatgggagaagatggtacatttcaagtgttaccgatcactgcgaaaatggacaaaag |
116 |
Q |
| |
|
|||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33442087 |
acctgtgttaaccagtgggcaagacaaaattataattacaacctatgggagaagatggtacatttcaagtgttaccgatcactgcgaaaatggacaaaag |
33441988 |
T |
|
| Q |
117 |
cttttcataactgtgcagccaaaacaagatggttggtctccagtaccttcaccttctccatcaccatcacttgacctggcgacacctgaagcaccacctt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
33441987 |
cttttcataactgtgcagccaaaacaagatggttggtctccagtaccttcaccttctccatcaccatcacttgacctggtgacacctgaagcaccgcctt |
33441888 |
T |
|
| Q |
217 |
cgagttcaccatggcctgctagtggtgtcccccgtcgatccctgctgccaaagaagttgttccaaatatttaacagagattgatagctgtttaagattgg |
316 |
Q |
| |
|
||| | ||||||||||||||||| | || ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33441887 |
cgaatgcaccatggcctgctagtagcgttccccgtcgatccctgctgccaaagaagcttttccaaatatttaacagagattgatagctgtttaagattgg |
33441788 |
T |
|
| Q |
317 |
atgttaatcgatcatgtgtgatgtttc |
343 |
Q |
| |
|
||||||| ||||||||||||||||||| |
|
|
| T |
33441787 |
atgttaaccgatcatgtgtgatgtttc |
33441761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 17 - 343
Target Start/End: Complemental strand, 33452307 - 33451981
Alignment:
| Q |
17 |
acctgtgttaactagtggacaagataaaattataattacaacctatgggagaagatggtacatttcaagtgttaccgatcactgcgaaaatggacaaaag |
116 |
Q |
| |
|
|||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33452307 |
acctgtgttaaccagtgggcaagacaaaattataattacaacctatgggagaagatggtacatttcaagtgttaccgatcactgcgaaaatggacaaaag |
33452208 |
T |
|
| Q |
117 |
cttttcataactgtgcagccaaaacaagatggttggtctccagtaccttcaccttctccatcaccatcacttgacctggcgacacctgaagcaccacctt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
33452207 |
cttttcataactgtgcagccaaaacaagatggttggtctccagtaccttcaccttctccatcaccatcacttgacctggtgacacctgaagcaccgcctt |
33452108 |
T |
|
| Q |
217 |
cgagttcaccatggcctgctagtggtgtcccccgtcgatccctgctgccaaagaagttgttccaaatatttaacagagattgatagctgtttaagattgg |
316 |
Q |
| |
|
||| | ||||||||||||||||| | || ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33452107 |
cgaatgcaccatggcctgctagtagcgttccccgtcgatccctgctgccaaagaagcttttccaaatatttaacagagattgatagctgtttaagattgg |
33452008 |
T |
|
| Q |
317 |
atgttaatcgatcatgtgtgatgtttc |
343 |
Q |
| |
|
||||||| ||||||||||||||||||| |
|
|
| T |
33452007 |
atgttaaccgatcatgtgtgatgtttc |
33451981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 12 - 159
Target Start/End: Complemental strand, 33399776 - 33399629
Alignment:
| Q |
12 |
gcagaacctgtgttaactagtggacaagataaaattataattacaacctatgggagaagatggtacatttcaagtgttaccgatcactgcgaaaatggac |
111 |
Q |
| |
|
|||| ||| |||||||| |||||||| ||||||||| | | |||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| |
|
|
| T |
33399776 |
gcagcaccagtgttaacaagtggacatgataaaattgcattgacaacctatgggagaagatggtacatttcaggtgttgccaatcactgcgaaaatggac |
33399677 |
T |
|
| Q |
112 |
aaaagcttttcataactgtgcagccaaaacaagatggttggtctccag |
159 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||| ||||| |
|
|
| T |
33399676 |
aaaagcttttcataaatgttttaccaaaacaagatggttggtatccag |
33399629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 21 - 172
Target Start/End: Complemental strand, 33395880 - 33395729
Alignment:
| Q |
21 |
gtgttaactagtggacaagataaaattataattacaacctatgggagaagatggtacatttcaagtgttaccgatcactgcgaaaatggacaaaagcttt |
120 |
Q |
| |
|
||||||||||||||||| |||| |||| || | ||||||||||| |||||||||||||||||| ||| | | |||||||| | ||| |||||||||| |
|
|
| T |
33395880 |
gtgttaactagtggacatgatacaattttattgacaacctatggaagaagatggtacatttcaggtgctgctcatcactgcaatcttggccaaaagcttt |
33395781 |
T |
|
| Q |
121 |
tcataactgtgcagccaaaacaagatggttggtctccagtaccttcaccttc |
172 |
Q |
| |
|
|||||| ||||||||| ||| |||||||||||||||||| |||||||| |
|
|
| T |
33395780 |
tcataaacgtgcagccaccacagtttggttggtctccagtaccctcaccttc |
33395729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University