View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21036_low_26 (Length: 357)

Name: NF21036_low_26
Description: NF21036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21036_low_26
NF21036_low_26
[»] chr1 (1 HSPs)
chr1 (9-357)||(44973529-44973874)


Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 9 - 357
Target Start/End: Original strand, 44973529 - 44973874
Alignment:
Q  9 caagaatataatgagttgttaaataaaatgtatatcatttttgcatttataaacacaaaaggctcacggactatatatataagtgctgattgcttgtaat 108  Q
    |||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    |||||||||||||||||||||    
T  44973529 caagaaaataatgagttgttaaataaaatgtatatgattgttgcatttataaacacaaaaggctcacggactata----taagtgctgattgcttgtaat 44973624  T
Q  109 acagtataattccatgataggaaaaatagtaggataataatgcaaccaccaaaaggtacaaaacatttttaattattcctttatttttgtctctctttat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44973625 acagtataattccatgataggaaaaatagtaggataataatgcaaccaccaaaaggtacaaaacatttttaattattcctttatttttgtctctctttat 44973724  T
Q  209 catccacaccaacgttatac-attccaacgcatggaaacacaaacactcattgttccatcccaccaaaaccttaatttcactccaacttctctcccttag 307  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44973725 catccacaccaacgttatactctcccaacgcatggaaacacaaacactcattgttccatcccaccaaaaccttaatttcactccaacttctctcccttag 44973824  T
Q  308 ctatggaaaaccaaccatcaccacttccaccaaaaacatacaaactaaca 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44973825 ctatggaaaaccaaccatcaccacttccaccaaaaacatacaaactaaca 44973874  T

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