View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21036_low_27 (Length: 355)
Name: NF21036_low_27
Description: NF21036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21036_low_27 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 20 - 343
Target Start/End: Complemental strand, 42891449 - 42891126
Alignment:
| Q |
20 |
ctaaatggttcaaaatcaaaggtctcctttttctccttctcatcatcagtcaaaattgtgccacaatacaaaacaagcccatttggaggaaccttgttat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42891449 |
ctaaatggttcaaaatcaaaggtctcctttttctccttctcatcatcagtcaaaattgtgccacaatacaaaacaagcccatttggaggaaccttgttat |
42891350 |
T |
|
| Q |
120 |
aaagcttaagcctctgctgggcagaactgattgcaccaagcacagactgtcgattcaccctacttttgatgtttgaagcagttccatactcattggcaag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42891349 |
aaagcttaagcctctgctgggcagaactgattgcaccaagcacagactgtcgattcaccctacttttgatgtttgaagcagttccatactcattggcaag |
42891250 |
T |
|
| Q |
220 |
catcttggtaacacgagatatttgatcacgcgggggtatgataagagaaatcatacttgtcccatttcctctggcagcttcaagattcttcatcaattgc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42891249 |
catcttggtaacacgagatatttgatcacgcgggggtatgataagagaaatcatacttgtcccatttcctctggcagcttcaagattcttcatcaattgc |
42891150 |
T |
|
| Q |
320 |
ttgattttccacaccccaatgttc |
343 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
42891149 |
ttgattttccacaccccaatgttc |
42891126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 20 - 343
Target Start/End: Complemental strand, 28920766 - 28920443
Alignment:
| Q |
20 |
ctaaatggttcaaaatcaaaggtctcctttttctccttctcatcatcagtcaaaattgtgccacaatacaaaacaagcccatttggaggaaccttgttat |
119 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||| |||||||||||| |||||| ||| ||||||||||||||| |||||||| |||||||||| |
|
|
| T |
28920766 |
ctaaatggttcaaaatcaatggtcacctttttctccttaccatcatcagtcacaattgtaccagtatacaaaacaagcccgtttggagggaccttgttat |
28920667 |
T |
|
| Q |
120 |
aaagcttaagcctctgctgggcagaactgattgcaccaagcacagactgtcgattcaccctacttttgatgtttgaagcagttccatactcattggcaag |
219 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| | |||| |
|
|
| T |
28920666 |
aaagcttaagcctctgctgagcagaagtgattgcaccaagcacagactgtcgattcaccctactcttgatgtttgaagcagttccaaactcatcgccaag |
28920567 |
T |
|
| Q |
220 |
catcttggtaacacgagatatttgatcacgcgggggtatgataagagaaatcatacttgtcccatttcctctggcagcttcaagattcttcatcaattgc |
319 |
Q |
| |
|
|||||| |||||||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||| | |
|
|
| T |
28920566 |
catcttagtaacacgagcaatttgatcacgtgggggcatgataagagaaatcatactcgtcccatttcctctggcagcttcaagagccttgatcaatttc |
28920467 |
T |
|
| Q |
320 |
ttgattttccacaccccaatgttc |
343 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
28920466 |
ttgattttccacacctcaatgttc |
28920443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 73 - 247
Target Start/End: Original strand, 44878335 - 44878508
Alignment:
| Q |
73 |
aattgtgccacaatacaaaacaagcccatttggaggaaccttgttataaagcttaagcctctgctgggcagaactgattgcaccaagcacagactgtcga |
172 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||| |||||||||| |
|
|
| T |
44878335 |
aattgtgccagtatacaaaacaagcccatttggaggaaccttgttataaagcttaagcctcttttgagcagaagcgattgcaccaagcttagactgtcga |
44878434 |
T |
|
| Q |
173 |
ttcaccctacttttgatgtttgaagcagttccatactcattggcaagcatcttggtaacacgagatatttgatca |
247 |
Q |
| |
|
| || ||||||| |||||||||||||||||| |||||| ||| |||||||| |||||||| || ||||||| |
|
|
| T |
44878435 |
tatcccttactttttatgtttgaagcagttccaaactcatcaccaa-catcttggcaacacgagctacttgatca |
44878508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 98 - 300
Target Start/End: Original strand, 32764378 - 32764580
Alignment:
| Q |
98 |
ccatttggaggaaccttgttataaagcttaagcctctgctgggcagaactgattgcaccaagcacagactgtcgattcaccctacttttgatgtttgaag |
197 |
Q |
| |
|
||||||||||||||||| |||||||| || | |||||| || |||||| | || || |||||||| || || || || |||||||||||||||||||||| |
|
|
| T |
32764378 |
ccatttggaggaaccttattataaagtttcaacctctgttgtgcagaagtaatggctccaagcactgattgccggtttaccctacttttgatgtttgaag |
32764477 |
T |
|
| Q |
198 |
cagttccatactcattggcaagcatcttggtaacacgagatatttgatcacgcgggggtatgataagagaaatcatacttgtcccatttcctctggcagc |
297 |
Q |
| |
|
|||||||| | |||| | | |||||| || ||||||||||||||||| || || || || || ||||||||||| || || ||||| ||||| ||||| |
|
|
| T |
32764478 |
cagttccaaattcatctcccaacatcttagtgacacgagatatttgatcgcgtggaggcattatcagagaaatcatgctagtaccattacctcttgcagc |
32764577 |
T |
|
| Q |
298 |
ttc |
300 |
Q |
| |
|
||| |
|
|
| T |
32764578 |
ttc |
32764580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University