View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21036_low_28 (Length: 350)
Name: NF21036_low_28
Description: NF21036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21036_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 5571692 - 5571852
Alignment:
| Q |
18 |
cagtaccctgcacaaaaacaaatagaaagtgacccttgttctacactcccaataccagacaaataaattctgctatatcctcaaccatgatttgttttat |
117 |
Q |
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| T |
5571692 |
cagtaccctgcacaagcacaaataaaaagtgacacttcttttacacttccaatgccagactaatatattatgttatatccttaaccataatttgtttaat |
5571791 |
T |
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| Q |
118 |
gtagtagcaacagggattgcatgtatttcaatgagactcagaactctaaccatatttatac |
178 |
Q |
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| T |
5571792 |
gtagtagcaaccgggattgcatatctttcaatgagactcggaactctaaccatatttatac |
5571852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 304 - 342
Target Start/End: Original strand, 5570227 - 5570265
Alignment:
| Q |
304 |
caacaaattctcatcactatttttcagctcattcatctc |
342 |
Q |
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| T |
5570227 |
caacaaattctcatcactatttttcagctcattcatctc |
5570265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 27972694 - 27972752
Alignment:
| Q |
16 |
atcagtaccctgcacaaaaacaaatagaaagtgacccttgttctacactcccaatacca |
74 |
Q |
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| T |
27972694 |
atcagtaccctgcacaagcacaaataaaaagtgacacttcttttacacttccaatacca |
27972752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 342
Target Start/End: Original strand, 5579521 - 5579576
Alignment:
| Q |
286 |
tatgccataaaacttgctcaacaaattctcatcactatttttcagctcattcatctc |
342 |
Q |
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| T |
5579521 |
tatgccagaaaacatgtgcaacaatttctcatcact-tttttcagctcattcatctc |
5579576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 29877934 - 29877848
Alignment:
| Q |
19 |
agtaccctgcacaaaaacaaatagaaagtgacccttgttctacactcccaataccagacaaataaattctgctatatcctcaaccat |
105 |
Q |
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| T |
29877934 |
agtaccctgcacaagcaaaagtagaaagtgacccttgttctacacttccaataccaaacaaataaattatgttatatcctctaccat |
29877848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 24259423 - 24259509
Alignment:
| Q |
19 |
agtaccctgcacaaaaacaaatagaaagtgacccttgttctacactcccaataccagacaaataaattctgctatatcctcaaccat |
105 |
Q |
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| T |
24259423 |
agtacccagcacaagcacaaatagaaagtgaaccttgttctacacttccaatgcaagacaaagaaattatgttatagcctcaaccat |
24259509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 806856 - 806792
Alignment:
| Q |
18 |
cagtaccctgcacaaaaacaaatagaaagtgacccttgttctacactcccaataccagacaaata |
82 |
Q |
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| T |
806856 |
cagtaccctgcacaagcacaaataaaaagtgacacttcttttacacttccaataccagactaata |
806792 |
T |
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