View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21036_low_30 (Length: 313)
Name: NF21036_low_30
Description: NF21036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21036_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 7 - 297
Target Start/End: Original strand, 52340207 - 52340497
Alignment:
| Q |
7 |
aaattattctcatcaatattttatagtttaatggacatgcatgggtatgatactaatatgtaccatctatgattaaatttataaaaatgcccacgacaat |
106 |
Q |
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| T |
52340207 |
aaattattattatcaatattttatagtttaatggacatgcatgggtatgatactaatatgtaccatctatgattaaatttataaaattgcccatgacaat |
52340306 |
T |
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| Q |
107 |
gagagaggtatctacctgtaacaatgtccatgaagaagggaacggattctgttaacttgtgaggaggtttacccttccatttcgccgcaagatatggaat |
206 |
Q |
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| T |
52340307 |
gagagaggtatctacctgtaacaatgtccatgaagaagggaacggattctgttaacttgtgaggaggtttacccttccatttcgccgcaagatatggaat |
52340406 |
T |
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| Q |
207 |
agcgatgtcttgcaaataaacaccaatggcggtgaatttgacgaatttgtcttggatttggatacctctcacccctgcgccaccaaggaag |
297 |
Q |
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| T |
52340407 |
agcgatgtcttgcaaataaacaccaatggcggtgaatttgacgaatttgtcttggatttggatacctctcacccctgcgccgccaaggaag |
52340497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 119 - 297
Target Start/End: Original strand, 52334316 - 52334494
Alignment:
| Q |
119 |
tacctgtaacaatgtccatgaagaagggaacggattctgttaacttgtgaggaggtttacccttccatttcgccgcaagatatggaatagcgatgtcttg |
218 |
Q |
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| T |
52334316 |
tacctgtaacgatgtctctgaagaagggaacggtatccgttaattcatgagcagatctggccttccatttctctgcaagatatggaacagcgatatcctg |
52334415 |
T |
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| Q |
219 |
caaataaacaccaatggcggtgaatttgacgaatttgtcttggatttggatacctctcacccctgcgccaccaaggaag |
297 |
Q |
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| T |
52334416 |
caaataaacaccaatggcggtgaatttgacgaatttgtcttgaatttgaatgcctctctctcctgcaccgccgaggaag |
52334494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 7 - 271
Target Start/End: Original strand, 9184400 - 9184664
Alignment:
| Q |
7 |
aaattattctcatcaatattttatagtttaatggacatgcatgggtatgatactaatatgtaccatctatgattaaatttataaaaatgcccacgacaat |
106 |
Q |
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|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
9184400 |
aaattattattatcaatattttatagtttaatggacatgcatgggtatgatactaatatgtaccatctatgattaaatttataaaaatgcccatgacaat |
9184499 |
T |
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| Q |
107 |
gagagaggtatctacctgtaacaatgtccatgaagaagggaacggattctgttaacttgtgaggaggtttacccttccatttcgccgcaagatatggaat |
206 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9184500 |
tagagaggtatccacctgtaacaatgtccaagaagaagggaacggattctgttaacttgtgaggaggtttacccttccatttcgcggcaagatatggaat |
9184599 |
T |
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| Q |
207 |
agcgatgtcttgcaaataaacaccaatggcggtgaatttgacgaatttgtcttggatttggatac |
271 |
Q |
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| T |
9184600 |
agcgatgtcctgcaaataaacaccaatggcggtgaatttgacgaatttgtcttggatttggatac |
9184664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 119 - 297
Target Start/End: Original strand, 9180917 - 9181095
Alignment:
| Q |
119 |
tacctgtaacaatgtccatgaagaagggaacggattctgttaacttgtgaggaggtttacccttccatttcgccgcaagatatggaatagcgatgtcttg |
218 |
Q |
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|||||||||| ||||| ||||||||||||||| || ||||| | |||| || ||| ||||||||||| | ||||||||||||| |||||| || || |
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| T |
9180917 |
tacctgtaacgatgtctctgaagaagggaacggtatccgttaattcatgagcagatttggccttccatttctctgcaagatatggaacagcgatatcctg |
9181016 |
T |
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| Q |
219 |
caaataaacaccaatggcggtgaatttgacgaatttgtcttggatttggatacctctcacccctgcgccaccaaggaag |
297 |
Q |
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| T |
9181017 |
caaataaacaccaatggcggtgaatttgacgaatttgtcttggatttggatacctctagcccctgtgccgccaaggaag |
9181095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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