View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21036_low_35 (Length: 281)

Name: NF21036_low_35
Description: NF21036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21036_low_35
NF21036_low_35
[»] chr3 (10 HSPs)
chr3 (134-242)||(5409879-5409987)
chr3 (134-195)||(45691835-45691896)
chr3 (134-213)||(14709-14788)
chr3 (134-213)||(21913103-21913182)
chr3 (134-213)||(40997279-40997358)
chr3 (134-213)||(41950143-41950222)
chr3 (134-213)||(50901977-50902056)
chr3 (134-213)||(33047937-33048016)
chr3 (134-182)||(34848356-34848404)
chr3 (148-185)||(40316745-40316782)
[»] chr6 (11 HSPs)
chr6 (134-251)||(7807616-7807730)
chr6 (134-241)||(26046759-26046873)
chr6 (134-227)||(25510400-25510497)
chr6 (140-241)||(5272294-5272400)
chr6 (134-227)||(5173302-5173395)
chr6 (134-213)||(2523964-2524043)
chr6 (134-213)||(10839606-10839685)
chr6 (134-213)||(25087050-25087129)
chr6 (134-213)||(29918888-29918967)
chr6 (134-213)||(30592735-30592814)
chr6 (134-213)||(34783563-34783642)
[»] chr1 (7 HSPs)
chr1 (134-227)||(25699917-25700010)
chr1 (134-221)||(33112729-33112816)
chr1 (134-213)||(50579786-50579865)
chr1 (175-227)||(41444968-41445020)
chr1 (143-191)||(41445159-41445207)
chr1 (134-170)||(17306554-17306590)
chr1 (136-169)||(34306227-34306260)
[»] chr2 (11 HSPs)
chr2 (137-242)||(41759769-41759874)
chr2 (134-227)||(45326185-45326278)
chr2 (134-227)||(28137235-28137328)
chr2 (134-227)||(17153669-17153765)
chr2 (134-213)||(9302910-9302989)
chr2 (134-213)||(12391640-12391719)
chr2 (134-213)||(37426074-37426153)
chr2 (134-213)||(42453395-42453474)
chr2 (134-213)||(35466917-35466996)
chr2 (134-171)||(27247221-27247258)
chr2 (134-178)||(34041450-34041494)
[»] chr7 (9 HSPs)
chr7 (134-227)||(25676330-25676423)
chr7 (144-227)||(581464-581547)
chr7 (144-227)||(581730-581813)
chr7 (134-213)||(518486-518565)
chr7 (134-213)||(4581917-4581996)
chr7 (134-213)||(16730277-16730356)
chr7 (134-213)||(45296483-45296562)
chr7 (134-182)||(314311-314359)
chr7 (134-213)||(37468064-37468143)
[»] chr8 (9 HSPs)
chr8 (134-227)||(26758733-26758826)
chr8 (134-227)||(34740651-34740744)
chr8 (134-228)||(2378211-2378305)
chr8 (134-213)||(4599164-4599243)
chr8 (134-213)||(30887061-30887140)
chr8 (134-213)||(31960625-31960704)
chr8 (134-213)||(34852690-34852769)
chr8 (134-179)||(12110312-12110357)
chr8 (149-213)||(23615578-23615642)
[»] chr5 (12 HSPs)
chr5 (134-241)||(41308167-41308277)
chr5 (134-213)||(669727-669806)
chr5 (134-213)||(2851210-2851289)
chr5 (134-213)||(9616756-9616835)
chr5 (134-213)||(15295681-15295760)
chr5 (134-213)||(10642519-10642598)
chr5 (134-213)||(21119443-21119522)
chr5 (134-213)||(30985143-30985222)
chr5 (134-213)||(35858741-35858820)
chr5 (130-180)||(19265279-19265329)
chr5 (134-170)||(17816015-17816051)
chr5 (134-182)||(33471976-33472024)
[»] chr4 (9 HSPs)
chr4 (134-198)||(45851300-45851364)
chr4 (143-241)||(20254584-20254684)
chr4 (134-213)||(26496852-26496931)
chr4 (134-213)||(36668064-36668143)
chr4 (134-213)||(49318414-49318493)
chr4 (134-176)||(30548386-30548428)
chr4 (145-202)||(16334998-16335055)
chr4 (134-182)||(35233958-35234006)
chr4 (214-242)||(50179743-50179771)
[»] scaffold0079 (1 HSPs)
scaffold0079 (145-202)||(57805-57862)
[»] scaffold0608 (1 HSPs)
scaffold0608 (214-242)||(203-231)


Alignment Details
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 134 - 242
Target Start/End: Original strand, 5409879 - 5409987
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgaccttattattattatcttatt 233  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5409879 ttttataattatattatctatcactcttatttattacatctaaaaaccactcctactactactttgttgatgtcaacgaccttattattattatcttatt 5409978  T
Q  234 ttaattcaa 242  Q
    |||||||||    
T  5409979 ttaattcaa 5409987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 45691896 - 45691835
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactac 195  Q
    ||||||||||||||| ||||||||||||||||||||||| || |||||| ||||||||||||    
T  45691896 ttttattattatattttctatcactcttatttgttacatgtacaaaccactcctactactac 45691835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 14788 - 14709
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    |||||||||||||| ||||| ||||||||||||||| || || |||||  || |||||||||||||||| ||||||||||    
T  14788 ttttattattatataatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgac 14709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 21913182 - 21913103
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    |||||||||||||| ||||| ||||||||||||||| || || |||||  || |||||||||||||||| ||||||||||    
T  21913182 ttttattattatataatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgac 21913103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 40997279 - 40997358
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    |||||||||||||| ||||| ||||||||||||||| || || |||||  || |||||||||||||||| ||||||||||    
T  40997279 ttttattattatataatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgac 40997358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 41950222 - 41950143
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    |||||||||||||| ||||| ||||||||||||||| || || |||||  || |||||||||||||||| ||||||||||    
T  41950222 ttttattattatataatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgac 41950143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 50902056 - 50901977
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    |||||||||||||| ||||| ||||||||||||||| || || |||||  || |||||||||||||||| ||||||||||    
T  50902056 ttttattattatataatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgac 50901977  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 33047937 - 33048016
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    |||||||||||||| ||||| ||||||||||||||| || || ||||   || |||||||||||||||| ||||||||||    
T  33047937 ttttattattatataatctaccactcttatttgttagatgtacaaactgctcttactactactttgttgttgtcaacgac 33048016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 34848404 - 34848356
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaacca 182  Q
    |||||||||||| || ||||||||||||||||||||||| |||||||||    
T  34848404 ttttattattatgttgtctatcactcttatttgttacatgtaaaaacca 34848356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 40316782 - 40316745
Alignment:
Q  148 tatctatcactcttatttgttacatctaaaaaccaatc 185  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  40316782 tatctatcactcttatttgttacatataaaaaccaatc 40316745  T

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Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 134 - 251
Target Start/End: Original strand, 7807616 - 7807730
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgaccttattattattatcttatt 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||   ||||||||||||||||    
T  7807616 ttttattattatattatctatcactcttatttgttacatctaaaaatcactcctactactactttgttgatgtcaacgacc---ttattattatcttatt 7807712  T
Q  234 ttaattcaaaattgttcc 251  Q
    ||||||||| ||||||||    
T  7807713 ttaattcaacattgttcc 7807730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 134 - 241
Target Start/End: Complemental strand, 26046873 - 26046759
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcc----tactactactttgttgatgtcaacgaccttattattatt---a 226  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||| ||     |||||||||||||||| | | ||||||||||||||||||   |    
T  26046873 ttttattattatattatctatcactcttatttgttacatgtacaaaccactcactcatactactactttgttgctattaacgaccttattattattatca 26046774  T
Q  227 tcttattttaattca 241  Q
    |||||||||||||||    
T  26046773 tcttattttaattca 26046759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 25510497 - 25510400
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcc----tactactactttgttgatgtcaacgaccttattattattat 227  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||| ||     |||||||||||||||| | | ||||||||||||||||||||    
T  25510497 ttttattattatattatctatcactcttatttgttacatgtacaaaccactcactcatactactactttgttgctattaacgaccttattattattat 25510400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 140 - 241
Target Start/End: Complemental strand, 5272400 - 5272294
Alignment:
Q  140 tattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac-----cttattattattatcttattt 234  Q
    ||||||||||| |||||||||| | |||||||| || ||| || ||||||||||||||||||| |||||||| |      ||||||||||||||||||||    
T  5272400 tattatattatttatcactcttgtgtgttacatgtataaatcactcctactactactttgttgctgtcaacggcgtattattattattattatcttattt 5272301  T
Q  235 taattca 241  Q
    |||||||    
T  5272300 taattca 5272294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 5173395 - 5173302
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgaccttattattattat 227  Q
    ||||||||||||||||| ||||||||||||||||||||| || ||| || | ||||||||||||| ||| |||||| | |  ||||||||||||    
T  5173395 ttttattattatattatttatcactcttatttgttacatgtacaaatcacttctactactactttattgttgtcaaaggctgtattattattat 5173302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 2523964 - 2524043
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    |||||||||||||| ||||| ||||||||||||||| || || |||||  || |||||||||||||||| ||||||||||    
T  2523964 ttttattattatataatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgac 2524043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 10839606 - 10839685
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    |||||||||||||| ||||| ||||||||||||||| || || |||||  || |||||||||||||||| ||||||||||    
T  10839606 ttttattattatataatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgac 10839685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 25087129 - 25087050
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    |||||||||||||| ||||| ||||||||||||||| || || |||||  || |||||||||||||||| ||||||||||    
T  25087129 ttttattattatataatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgac 25087050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 29918967 - 29918888
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    |||||||||||||| ||||| ||||||||||||||| || || |||||  || |||||||||||||||| ||||||||||    
T  29918967 ttttattattatataatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgac 29918888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 30592735 - 30592814
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    |||||||||||||| ||||| ||||||||||||||| || || |||||  || |||||||||||||||| ||||||||||    
T  30592735 ttttattattatataatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgac 30592814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 34783642 - 34783563
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    |||||||||||||| ||||| ||||||||||||||| || || |||||  || |||||||||||||||| ||||||||||    
T  34783642 ttttattattatataatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgac 34783563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 25699917 - 25700010
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgaccttattattattat 227  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25699917 ttttattattatattatctatcactcctatttgttacatctaaaaaccactcctactactactttgttgatgtcaacgaccttattattattat 25700010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 134 - 221
Target Start/End: Complemental strand, 33112816 - 33112729
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgaccttattat 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  33112816 ttttattattatattatctatcactcttatttgttacatctaaaaaccacttctactactactttgttgatgtcaacgaccttattat 33112729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 50579786 - 50579865
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    |||||||||||||| ||||| ||||||||||||||| || || |||||  || |||||||||||||||| ||||||||||    
T  50579786 ttttattattatataatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgac 50579865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 41445020 - 41444968
Alignment:
Q  175 aaaaaccaatcctactactactttgttgatgtcaacgaccttattattattat 227  Q
    |||||| | |||||||||||||||||||||||||||| |||||||||||||||    
T  41445020 aaaaactactcctactactactttgttgatgtcaacggccttattattattat 41444968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 143 - 191
Target Start/End: Complemental strand, 41445207 - 41445159
Alignment:
Q  143 tatattatctatcactcttatttgttacatctaaaaaccaatcctacta 191  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||    
T  41445207 tatattatctatcactcttatttgttacatctaaaaactactcctacta 41445159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 17306590 - 17306554
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttac 170  Q
    |||||||||||||||||||||||||||||||||||||    
T  17306590 ttttattattatattatctatcactcttatttgttac 17306554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 34306227 - 34306260
Alignment:
Q  136 ttattattatattatctatcactcttatttgtta 169  Q
    |||||||||| |||||||||||||||||||||||    
T  34306227 ttattattatgttatctatcactcttatttgtta 34306260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 9e-39; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 137 - 242
Target Start/End: Original strand, 41759769 - 41759874
Alignment:
Q  137 tattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgaccttattattattatcttatttta 236  Q
    ||||||||||||||||||||| ||||||||  |||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41759769 tattattatattatctatcacccttatttgccacatctaaaaaccactcctgctactactttgttgatgtcaacggccttattattattatcttatttta 41759868  T
Q  237 attcaa 242  Q
    ||||||    
T  41759869 attcaa 41759874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 45326278 - 45326185
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgaccttattattattat 227  Q
    ||||||||||||||||||||||||||||||||||||||| || ||| || |||||||||||| |||||| |||||||| || ||||||||||||    
T  45326278 ttttattattatattatctatcactcttatttgttacatgtacaaatcactcctactactacgttgttgctgtcaacggccgtattattattat 45326185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 28137328 - 28137235
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgaccttattattattat 227  Q
    |||||||||||||||||| |||| ||||||| |||| ||||||||| || || ||||||||||||||| |||||||||  ||||||||||||||    
T  28137328 ttttattattatattatccatcattcttattcgttagatctaaaaatcactcatactactactttgttaatgtcaacggtcttattattattat 28137235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 17153669 - 17153765
Alignment:
Q  134 ttttattattatattatctatcactcttat---ttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgaccttattattattat 227  Q
    ||||||||||||||||||||||||||||||   ||||||||| || ||| || || ||||||||||||||||  ||||||| || ||||||||||||    
T  17153669 ttttattattatattatctatcactcttatttgttgttacatgtacaaatcactcatactactactttgttgtcgtcaacggccgtattattattat 17153765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 9302910 - 9302989
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    |||||||||||||| ||||| ||||||||||||||| || || |||||  || |||||||||||||||| ||||||||||    
T  9302910 ttttattattatataatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgac 9302989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 12391719 - 12391640
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    |||||||||||||| ||||| ||||||||||||||| || || |||||  || |||||||||||||||| ||||||||||    
T  12391719 ttttattattatataatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgac 12391640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 37426153 - 37426074
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    |||||||||||||| ||||| ||||||||||||||| || || |||||  || |||||||||||||||| ||||||||||    
T  37426153 ttttattattatataatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgac 37426074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 42453395 - 42453474
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    |||||||||||||| ||||| ||||||||||||||| || || |||||  || |||||||||||||||| ||||||||||    
T  42453395 ttttattattatataatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgac 42453474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 35466917 - 35466996
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    ||||||||||||||  |||| ||||||||||||||| || || |||||  || |||||||||||||||| ||||||||||    
T  35466917 ttttattattatatagtctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgac 35466996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 27247221 - 27247258
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttaca 171  Q
    |||||||||||| |||||||||||||||||||||||||    
T  27247221 ttttattattatgttatctatcactcttatttgttaca 27247258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 34041494 - 34041450
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaa 178  Q
    |||||||||||| ||||||||||||||||||||||| || |||||    
T  34041494 ttttattattatgttatctatcactcttatttgttatatgtaaaa 34041450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 25676423 - 25676330
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgaccttattattattat 227  Q
    ||||||||||||||||||||||| ||||||||||||||| || |||||| ||||||||||||||||||| ||||||||||| ||||||||||||    
T  25676423 ttttattattatattatctatcattcttatttgttacatgtacaaaccactcctactactactttgttgctgtcaacgaccgtattattattat 25676330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 581464 - 581547
Alignment:
Q  144 atattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgaccttattattattat 227  Q
    ||||||||||||||||||||||||||||| || ||| || |||||||||||||||||||   ||||||||||||||||||||||    
T  581464 atattatctatcactcttatttgttacatgtacaaatcattcctactactactttgttgccatcaacgaccttattattattat 581547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 581730 - 581813
Alignment:
Q  144 atattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgaccttattattattat 227  Q
    ||||||||||||||||||||||||||||| || |||||| ||||||||||| |||||||  ||||||| |||||||||||||||    
T  581730 atattatctatcactcttatttgttacatgtacaaaccattcctactactattttgttgccgtcaacggccttattattattat 581813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 518486 - 518565
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    |||||||||||||| ||||| ||||||||||||||| || || |||||  || |||||||||||||||| ||||||||||    
T  518486 ttttattattatataatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgac 518565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 4581996 - 4581917
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    |||||||||||||| ||||| ||||||||||||||| || || |||||  || |||||||||||||||| ||||||||||    
T  4581996 ttttattattatataatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgac 4581917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 16730277 - 16730356
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    |||||||||||||| ||||| ||||||||||||||| || || |||||  || |||||||||||||||| ||||||||||    
T  16730277 ttttattattatataatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgac 16730356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 45296483 - 45296562
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    |||||||||||||| ||||| ||||||||||||||| || || |||||  || |||||||||||||||| ||||||||||    
T  45296483 ttttattattatataatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgac 45296562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 314359 - 314311
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaacca 182  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||    
T  314359 ttttattattatgttatctatcactcttatttgttacatataaaaacca 314311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 37468143 - 37468064
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    |||||||||||||| ||||| ||||||||||| ||| || || |||||  || |||||||||||||||| ||||||||||    
T  37468143 ttttattattatataatctaccactcttatttattagatgtacaaaccgctcttactactactttgttgttgtcaacgac 37468064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 26758733 - 26758826
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgaccttattattattat 227  Q
    ||||||||||||||||| ||||||||||||||||||||| || | |||| ||||||| ||||||||||| ||||||||||||||||||||||||    
T  26758733 ttttattattatattatatatcactcttatttgttacatgtacagaccactcctacttctactttgttgctgtcaacgaccttattattattat 26758826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 34740744 - 34740651
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgaccttattattattat 227  Q
    |||||||||||||||||||||||||| |||||||||||| || |||||| ||||||||||| ||||||| |||||||| |||||||||||||||    
T  34740744 ttttattattatattatctatcactcatatttgttacatgtacaaaccactcctactactattttgttgttgtcaacggccttattattattat 34740651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 134 - 228
Target Start/End: Complemental strand, 2378305 - 2378211
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgaccttattattattatc 228  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||| |||||||| | |||||| || |||||||||||||    
T  2378305 ttttattattatattatctatcactcttatttgttacatgtacaaaccactcctactactgctttgttgctctcaacggccgtattattattatc 2378211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 4599243 - 4599164
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    |||||||||||||| ||||| ||||||||||||||| || || |||||  || |||||||||||||||| ||||||||||    
T  4599243 ttttattattatataatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgac 4599164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 30887140 - 30887061
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    |||||||||||||| ||||| ||||||||||||||| || || |||||  || |||||||||||||||| ||||||||||    
T  30887140 ttttattattatataatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgac 30887061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 31960625 - 31960704
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    |||||||||||||| ||||| ||||||||||||||| || || ||||   || |||||||||||||||| ||||||||||    
T  31960625 ttttattattatataatctaccactcttatttgttagatgtataaactgctcttactactactttgttgttgtcaacgac 31960704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 34852690 - 34852769
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    |||||||||||||| ||||| ||||||||||||||| || || |||||  || |||||||| ||||||| ||||||||||    
T  34852690 ttttattattatataatctaccactcttatttgttagatgtacaaaccgctcttactactattttgttgttgtcaacgac 34852769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 12110357 - 12110312
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaa 179  Q
    |||||| ||||  |||||||||||||||||||||||||| ||||||    
T  12110357 ttttatcattaggttatctatcactcttatttgttacatgtaaaaa 12110312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 23615578 - 23615642
Alignment:
Q  149 atctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    ||||| ||||||||||||||| || || |||||  |  |||||||||||||||| ||||||||||    
T  23615578 atctaccactcttatttgttagatgtacaaaccgctattactactactttgttgttgtcaacgac 23615642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 134 - 241
Target Start/End: Original strand, 41308167 - 41308277
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgacc---ttattattattatctt 230  Q
    |||||||||||||||||||||| ||||||||||||| || || |||||| |||||||| |||||||||| |||||||||||   ||||||||||||||||    
T  41308167 ttttattattatattatctatctctcttatttgttatatgtacaaaccattcctactaatactttgttgctgtcaacgaccgtattattattattatctt 41308266  T
Q  231 attttaattca 241  Q
     ||||||||||    
T  41308267 gttttaattca 41308277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 669727 - 669806
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    |||||||||||||| ||||| ||||||||||||||| || || |||||  || |||||||||||||||| ||||||||||    
T  669727 ttttattattatataatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgac 669806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 2851289 - 2851210
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    |||||||||||||| ||||| ||||||||||||||| || || |||||  || |||||||||||||||| ||||||||||    
T  2851289 ttttattattatataatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgac 2851210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 9616835 - 9616756
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    |||||||||||||| ||||| ||||||||||||||| || || |||||  || |||||||||||||||| ||||||||||    
T  9616835 ttttattattatataatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgac 9616756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 15295681 - 15295760
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    |||||||||||||| ||||| ||||||||||||||| || || |||||  || |||||||||||||||| ||||||||||    
T  15295681 ttttattattatataatctaccactcttatttgttagatgtacaaaccgttcttactactactttgttgttgtcaacgac 15295760  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 10642519 - 10642598
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    |||||||||||||| ||||| ||||||||||||||| || || |||||  |  |||||||||||||||| ||||||||||    
T  10642519 ttttattattatataatctaccactcttatttgttagatgtacaaaccgcttttactactactttgttgttgtcaacgac 10642598  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 21119522 - 21119443
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    |||||||||||||| ||||| ||||||||||||||| || || |||||  || |||||||| ||||||| ||||||||||    
T  21119522 ttttattattatataatctaccactcttatttgttagatgtacaaaccgctcttactactattttgttgttgtcaacgac 21119443  T

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Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 30985143 - 30985222
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    |||||||||||| | ||||| ||||||||||||||| || || |||||  || |||||||||||||||| ||||||||||    
T  30985143 ttttattattatttaatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgac 30985222  T

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Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 35858820 - 35858741
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    |||||||||||||| ||||| ||||||||||| ||| || || |||||  || |||||||||||||||| ||||||||||    
T  35858820 ttttattattatataatctaccactcttatttattagatgtacaaaccgctcttactactactttgttgttgtcaacgac 35858741  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 19265329 - 19265279
Alignment:
Q  130 caaattttattattatattatctatcactcttatttgttacatctaaaaac 180  Q
    ||||||||||| |||| |||||||||||| ||||||||||| | |||||||    
T  19265329 caaattttatttttatgttatctatcacttttatttgttacctgtaaaaac 19265279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 17816051 - 17816015
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttac 170  Q
    |||||||||||  ||||||||||||||||||||||||    
T  17816051 ttttattattaggttatctatcactcttatttgttac 17816015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 33472024 - 33471976
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaacca 182  Q
    |||||||||||| ||||| |||||||||||||||  ||| |||||||||    
T  33472024 ttttattattatgttatcaatcactcttatttgtagcatgtaaaaacca 33471976  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 45851364 - 45851300
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactacttt 198  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||| ||||    
T  45851364 ttttattattatgttatctatcactcttatttattacatctaaaaaccactcctactactgcttt 45851300  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 241
Target Start/End: Complemental strand, 20254684 - 20254584
Alignment:
Q  143 tatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgacc---ttattattattatcttattttaatt 239  Q
    ||||| |||||||||||||||| ||||||| |  |||||| || |||||||||||||||| | |||||| ||   |||||||||||||||||||||||||    
T  20254684 tatatcatctatcactcttatt-gttacatgttcaaaccactcttactactactttgttgctatcaacggccgcattattattattatcttattttaatt 20254586  T
Q  240 ca 241  Q
    ||    
T  20254585 ca 20254584  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 26496852 - 26496931
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    |||||||||||||| ||||| ||||||||||||||| || || |||||  || |||||||||||||||| ||||||||||    
T  26496852 ttttattattatataatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgac 26496931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 36668143 - 36668064
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    |||||||||||||| ||||| ||||||||||||||| || || |||||  || |||||||||||||||| ||||||||||    
T  36668143 ttttattattatataatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgac 36668064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 49318493 - 49318414
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttgatgtcaacgac 213  Q
    |||||||||||||| ||||| ||||||||||||||| || || |||||  || |||||||||||||||| ||||||||||    
T  49318493 ttttattattatataatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgac 49318414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 176
Target Start/End: Complemental strand, 30548428 - 30548386
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaa 176  Q
    |||||||||||| ||||||||| |||||| |||||||||||||    
T  30548428 ttttattattatgttatctatcgctcttacttgttacatctaa 30548386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 16335055 - 16334998
Alignment:
Q  145 tattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttg 202  Q
    |||||||||||||  ||||||||||||| |||||  || |||||||||||| ||||||    
T  16335055 tattatctatcacaattatttgttacatgtaaaagtcactcctactactaccttgttg 16334998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 35234006 - 35233958
Alignment:
Q  134 ttttattattatattatctatcactcttatttgttacatctaaaaacca 182  Q
    |||||||||||  |||||||||||||| ||||||||| | |||||||||    
T  35234006 ttttattattaggttatctatcactctaatttgttacctgtaaaaacca 35233958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 242
Target Start/End: Complemental strand, 50179771 - 50179743
Alignment:
Q  214 cttattattattatcttattttaattcaa 242  Q
    |||||||||||||||||||||||||||||    
T  50179771 cttattattattatcttattttaattcaa 50179743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 57805 - 57862
Alignment:
Q  145 tattatctatcactcttatttgttacatctaaaaaccaatcctactactactttgttg 202  Q
    |||||||||||||  ||||||||||||| |||||  || |||||||||||| ||||||    
T  57805 tattatctatcacaattatttgttacatgtaaaagtcactcctactactaccttgttg 57862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0608 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 242
Target Start/End: Complemental strand, 231 - 203
Alignment:
Q  214 cttattattattatcttattttaattcaa 242  Q
    |||||||||||||||||||||||||||||    
T  231 cttattattattatcttattttaattcaa 203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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