View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21036_low_44 (Length: 249)
Name: NF21036_low_44
Description: NF21036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21036_low_44 |
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| [»] scaffold0121 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 39706819 - 39707059
Alignment:
| Q |
1 |
ataattaggcctagaggaagaatttattggttatgtccgactatttaaatgaatagaatatttgaaaagtttaaacatatactaaataaataagttaaat |
100 |
Q |
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| T |
39706819 |
ataattaggcttagaggaagaatttattggttatgtccgactatttaaatgaatagaatattttaaaagtttaaacatatactaaataaataagttaaat |
39706918 |
T |
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| Q |
101 |
tttataggctagatgatatgttcatgttgagctagcttacactcacccctaaat--acacacataacgaattttttgaacgaagacatgatgggctaaga |
198 |
Q |
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| T |
39706919 |
tttataggctagatgatatgttcatgttgagctagcttacactcacccctaaatacacacacataacgaattttttgaacgaagacatgatgggctaaga |
39707018 |
T |
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| Q |
199 |
aaaagtagtaaaatattacttggttgtgtgcttttgttcat |
239 |
Q |
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| T |
39707019 |
aaaagtagtaaaaacttacttggttgtgtgattttgttcat |
39707059 |
T |
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Target: scaffold0121 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 75 - 173
Target Start/End: Original strand, 37031 - 37128
Alignment:
| Q |
75 |
acatatactaaataaataagttaaattttataggctagatgatatgttcatgttgagctagcttacactcacccctaaatacacacataacgaattttt |
173 |
Q |
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| T |
37031 |
acatatactaaataaataatttaaattttattggctagattatatgtttatgttgggctagcttaccctcacccttaaatacacacat-acgaattttt |
37128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 153
Target Start/End: Original strand, 49064973 - 49065048
Alignment:
| Q |
80 |
tactaaataaataagttaaatttt--ataggctagatgatatgttcatgttgagctagcttacactcacccctaaa |
153 |
Q |
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| T |
49064973 |
tactaaataaatgagttacatttttaaaaggtcagatgatatgttcatgttgggctagcttacattcacccctaaa |
49065048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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