View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21036_low_52 (Length: 227)
Name: NF21036_low_52
Description: NF21036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21036_low_52 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 18943981 - 18943784
Alignment:
| Q |
14 |
cagagactaatcactcgtcagataagacctctgtgaatgccaaaacatatttaaaactgctgcgtttctaacgttagatttgaacccatacttgtaatta |
113 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
18943981 |
cagagactaatcgctcgtcagataagacctctgtgaatgccaaaacatatttaaaactgctgcatttctaacgttagatttgaacccatacctgtaatta |
18943882 |
T |
|
| Q |
114 |
agcttaaaagatcatttgtcatctcattcagatgcttttggtaaacctgctctttgaaatgatggatcggagaagtacattttccttgtatttctatc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
18943881 |
agcttaaaagatcatttgtcatctcattcaaatgcttttggtaaacctgctcttggaaatgacggatcggagaagtacattttccttgtatttttatc |
18943784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University