View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21036_low_53 (Length: 223)
Name: NF21036_low_53
Description: NF21036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21036_low_53 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 39706332 - 39706548
Alignment:
| Q |
1 |
tatggtgtaataatatgttcagtagaatataatgccaggttctaaagaataaataagtattaatcttttaagtttgtggctaatttactttgttggtccc |
100 |
Q |
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| T |
39706332 |
tatggtgtaataatatgttcagtagaatataatgccaggttctaaagaataaataagtattaatcttttaagtttgtggctaatttactttgttggtccc |
39706431 |
T |
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| Q |
101 |
tgtctactatttttattttgttgatttgatacttactatgcataatgataattttgatcacctttaatcaagaataacaaccaaaatgtttggtttttcc |
200 |
Q |
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| T |
39706432 |
tgtctactatttttattttgttgatttgatacttactatgcataatgataattttgatctcctttaatcaagaataacaactaaaatgtttggtttttcc |
39706531 |
T |
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| Q |
201 |
tttgatctagaattatc |
217 |
Q |
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|||||||||||| |||| |
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| T |
39706532 |
tttgatctagaaatatc |
39706548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 49064225 - 49064321
Alignment:
| Q |
1 |
tatggtgtaataatatgttcagtagaatataatgccaggttctaaagaataaataagtattaatcttttaagtttgtggctaatttactttgttggt |
97 |
Q |
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| T |
49064225 |
tatggtgtaataatatgttctgtagaatatattgccaggtgttaaggaataaataaaaattaatcttttaagtttgtggctaatttactttgttggt |
49064321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 49049173 - 49049388
Alignment:
| Q |
1 |
tatggtgtaataatatgttcagtagaatataatgccaggttctaaagaataaataagtattaatcttttaagtttgtggctaatttactttgttggtccc |
100 |
Q |
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| T |
49049173 |
tatggtgtaataatatgttctgtagaatatatttcaagaggctatggaataaataagaattaatcctttaagtttgtggctaatttactttgttggtccc |
49049272 |
T |
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| Q |
101 |
t-----------------gtctactatttttattttgttgatttgatacttactatgcataatgataattttgatcacctttaatcaagaataacaacca |
183 |
Q |
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| |||||||| |||| ||||||||||||||||||| |||| || |||||||||| ||| |||||||||||||||||| |||| |
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| T |
49049273 |
tctgctatgcttgtttttgtctactaatttttttttgttgatttgatacttttcatgcgtagtgataatttttatctcctttaatcaagaataactacca |
49049372 |
T |
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| Q |
184 |
aaatgtttggtttttc |
199 |
Q |
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| T |
49049373 |
atatgtttgatttttc |
49049388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 110 - 201
Target Start/End: Original strand, 49064356 - 49064454
Alignment:
| Q |
110 |
tttttattttgttgatttgatacttactatgcataatgat------aattttg-atcacctttaatcaagaataacaaccaaaatgtttggtttttcct |
201 |
Q |
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||||| |||||||||||||||| |||| |||||||||||| ||||||| ||| |||||||||||||||||| ||||| |||||||||||||||| |
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| T |
49064356 |
ttttttttttgttgatttgatatttaccatgcataatgattaatgaaattttgtatctcctttaatcaagaataactaccaatatgtttggtttttcct |
49064454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 9757260 - 9757161
Alignment:
| Q |
1 |
tatggtgtaataata-tgttcagtagaatataatgccaggttctaaagaataaataagtattaatcttttaagtttgtggctaatttactttgttggtcc |
99 |
Q |
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||||||||||||||| ||||| |||||||||| |||||| ||| ||||||||||| |||||| |||||||||||| |||||||||||||||||||| |
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| T |
9757260 |
tatggtgtaataataatgttctgtagaatatattgccagagactatggaataaataagaattaattctttaagtttgtgcctaatttactttgttggtcc |
9757161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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