View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21036_low_54 (Length: 218)
Name: NF21036_low_54
Description: NF21036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21036_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 12189088 - 12188910
Alignment:
| Q |
1 |
ccaccataaccaccaccccagccgccacgccatggacctccccaaccatagccgccacgccacggaccgccgtaaccccaacctccatagccgccacgcc |
100 |
Q |
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| T |
12189088 |
ccaccataaccacctccccatccgccacgccatggacctccccatccatagccgccacgccatggaccgccgtaaccccaacc---atagccgccacgcc |
12188992 |
T |
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| Q |
101 |
acggaccaccgtaaccccaacctccatagccatatttgctttcatctaccccatttgctttatctacaataaataaataaat |
182 |
Q |
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| T |
12188991 |
aaggaccaccgtaaccccaacctccatagccatatttgctttcatctaccccatttgctttatctgcaatagataaataaat |
12188910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 12183357 - 12183195
Alignment:
| Q |
1 |
ccaccataaccaccaccccagccgccacgccatggacctccccaaccatagccgccacgccacggaccgccgtaaccccaacctccatagccgccacgcc |
100 |
Q |
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| T |
12183357 |
ccaccatagccatcaccaaagccgccacgccatggacctccccaaccatagtcaccacgccatggatcaccgtaaccccaacct---------ccacgcc |
12183267 |
T |
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| Q |
101 |
acggaccaccgtaaccccaacctc---catagccatatttgctttcatctaccccatttgctttatctacaa |
169 |
Q |
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| T |
12183266 |
atggaccaccgtaacccaaacctccatcatagtcatatttgctttcatcgaccccatttgctttatctacaa |
12183195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 12175852 - 12175697
Alignment:
| Q |
1 |
ccaccataaccaccaccccagccgccacgccatggacctccccaaccatagccgccacgccacggaccgccgtaaccccaacctccatagccgccacgcc |
100 |
Q |
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| T |
12175852 |
ccaccatagccaccaccccagcctccacgccatggacctccccaaccgtagcctccacgccatggaccgccataaccccaacct---------ccacgcc |
12175762 |
T |
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| Q |
101 |
acggaccaccgtaaccccaacctcc---atagccatatttgctttcatctaccccatttgcttta |
162 |
Q |
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| T |
12175761 |
atggaccgccgtaaccccaacctccataatagccatacttgctttcgtctatcccattttcttta |
12175697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 12188894 - 12188857
Alignment:
| Q |
171 |
aaataaataaataaattatacaaaatatgtatcttcat |
208 |
Q |
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| T |
12188894 |
aaataaataaatacattatacaaaatatatatcttcat |
12188857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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