View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21036_low_7 (Length: 535)
Name: NF21036_low_7
Description: NF21036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21036_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 24 - 497
Target Start/End: Complemental strand, 5774770 - 5774304
Alignment:
| Q |
24 |
aatgtctacagagccatcgtcgtttgccagaccagccttactaacatggcatggaacagtatctctcagttcgactccaaatatcatttggaagtttttc |
123 |
Q |
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| T |
5774770 |
aatgtctacagggccatcatcgtttgccagaccagccttactaacatggcatggaacagtatctctcagttcgactccaaatttcatttggaagtttttc |
5774671 |
T |
|
| Q |
124 |
aggtaattcatcattcgatcgatcgatcaatcaaattctgtggtggttgtttatggttgaggtaactgttgttagtgtgtgcgtgcttgcaggaggctga |
223 |
Q |
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| T |
5774670 |
aggtaattcatca----atcgatcaatcaatcaaattctgtggtggttgtttatggttgaggtaactgttgttagtgtatgcgtgcttgcaggaggctga |
5774575 |
T |
|
| Q |
224 |
attgctggttaatgtaagatatcacaagcttgtgccagaacatcagctgctgactgacaatgagaagaaaaccgtacttgagagatacactgttaaagaa |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5774574 |
attgctggttaatgtaagatatcacaagcttgtgccagaacatcagctgctgactgacaatgagaagaaaaccgtacttgagagatacactgttaaagaa |
5774475 |
T |
|
| Q |
324 |
actcaggtcagttat-nnnnnnnnttgtggaaattttgtgttatttagaatgtaactaatcgaatgagtaaagttatatatataatagtatttcacctag |
422 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5774474 |
actcaggtcagttataaaaaggaattgtggaaattttgtgttatttagaatgtaactaatcgaatgagtaaagt----tatataatagtatttcacctag |
5774379 |
T |
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| Q |
423 |
gcatttgaaaaatttctgcacacgcacatgtgcttcatctctgatttttcacctttcttctttccatgatgatgt |
497 |
Q |
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| T |
5774378 |
gcatttgaaaaatttctgcacacacacatgtgcttcatctctgatttttaacctttcttctttccatgatgatgt |
5774304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 2 - 392
Target Start/End: Complemental strand, 5768512 - 5768137
Alignment:
| Q |
2 |
caccaatcgtatgtcctccgacaatgtctacagagccatcgtcgtttgccagaccagccttactaacatggcatggaacagtatctctcagttcgactcc |
101 |
Q |
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|||||| |||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | |||||||| |
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| T |
5768512 |
caccaaacgtatgaactccgagaatgtctacagagccatcatcgtttgccagaccagccttactaacatggcac---------tctctgaaatcgactcc |
5768422 |
T |
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| Q |
102 |
aaatatcatttggaagtttttcaggtaattcatcattcgatcgatcgatcaatcaaattctgtggtggttgtttatggttgaggtaactgttgttagtgt |
201 |
Q |
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|||| |||||||||||||||||||||||||||||| ||| ||| |||||||||||| ||||||||||||| |||||||||||||| ||||||||||| |
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| T |
5768421 |
aaatttcatttggaagtttttcaggtaattcatca----atccatcaatcaatcaaattttgtggtggttgttaatggttgaggtaaccgttgttagtgt |
5768326 |
T |
|
| Q |
202 |
gtgcgtgcttgcaggaggctgaattgctggttaatgtaagatatcacaagcttgtgccagaacatcagctgctgactgacaatgagaagaaaaccgtact |
301 |
Q |
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| T |
5768325 |
atgcgttcttgaaggaggctgaattgctggttaacgtaagatatcacgagcttgtgccagaacatcaggtgctgaccgacaatgagaagaaaaccttact |
5768226 |
T |
|
| Q |
302 |
tgagagatacactgttaaagaaactcaggtcagttatnnnnnnnnttgtggaaattttgtgttatttagaatgtaactaatcgaatgagta |
392 |
Q |
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||||||||||| |||||||||||||||||||||||| ||| |||| |||||||||||||||||| |||||||||||||||| |
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| T |
5768225 |
cgagagatacaccgttaaagaaactcaggtcagttataaataaaattgatgaaa--ttgtgttatttagaatgtgactaatcgaatgagta |
5768137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 5775168 - 5775102
Alignment:
| Q |
1 |
acaccaatcgtatgtcctccgacaatgtctacagagccatcgtcgtttgccagaccagccttactaa |
67 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5775168 |
acaccaatcgtatgtcctccgacaatgtctacagagccatcgtcgtttgccagaccagccttactaa |
5775102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 335
Target Start/End: Original strand, 465679 - 465800
Alignment:
| Q |
214 |
aggaggctgaattgctggttaatgtaagatatcacaagcttgtgccagaacatcagctgctgactgacaatgagaagaaaaccgtacttgagagatacac |
313 |
Q |
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||||||| || |||||||||||| ||| | | || ||||||||| ||||||||| | || | ||||| |||||||||||| | |||||||||||||| |
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| T |
465679 |
aggaggcagagttgctggttaatataaaagagcatgtgcttgtgcctgaacatcagattctcaatgacaccgagaagaaaaccttgcttgagagatacac |
465778 |
T |
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| Q |
314 |
tgttaaagaaactcaggtcagt |
335 |
Q |
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||| || ||||||||||||||| |
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| T |
465779 |
tgtcaaggaaactcaggtcagt |
465800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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