View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21036_low_9 (Length: 501)
Name: NF21036_low_9
Description: NF21036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21036_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 105 - 491
Target Start/End: Original strand, 36057132 - 36057518
Alignment:
| Q |
105 |
tacataagatgaagagtcatcaaggtcatttttagatgcatgattttggacttgttagttatcaattgtcaccaagggcagaatgccttgccggcaatgc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36057132 |
tacataagatgaagagtcatcaaggtcatttttagatgcatgattttggacttgttagttatcaattgtcaccaagggcagaatgccttgccggcaatgc |
36057231 |
T |
|
| Q |
205 |
tgagaatccatatgtgcctcgtaattatcaagagatccatacctgaagtgattaggggctcgattcctgagagcgaaagtttcaaaaagttcttttaaac |
304 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36057232 |
tgagaatccatacgtgcctcgtaattatcaagagatccatacctgaagtgattaggggttcgattcctgagagcgaaagtttcaaaaagttcttttaaac |
36057331 |
T |
|
| Q |
305 |
cacatagcaattctttttcaagaatgataaggttgagataagtagtgttttatttaagctcatttcaatgaatttataaaggtaaatgaaacataaggga |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36057332 |
cacatagcaattctttttcaagaatgataaggttgagataagtagtgttttatttaagctcatttcaatgaatttataaaggtaaatgaaacataaggga |
36057431 |
T |
|
| Q |
405 |
gtacttatagaaatgtctaatctcgcatcaaaactcaagacattgaagttagagtttcatgaagaattgattgtgcacttgcctttg |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36057432 |
gtacttatagaaatgtctaatctcgcatcaaaactcaagacattgaagttagagtttcatgaagaattgattgtgcacttggctttg |
36057518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 382 - 481
Target Start/End: Original strand, 28723708 - 28723808
Alignment:
| Q |
382 |
aaaggtaaatgaaacataagggagtacttatag-aaatgtctaatctcgcatcaaaactcaagacattgaagttagagtttcatgaagaattgattgtgc |
480 |
Q |
| |
|
||||||||| | ||||||||||||||| ||| | ||||||||||||||||||||||||||||| || |||||||||| ||| |||||| || ||||||| |
|
|
| T |
28723708 |
aaaggtaaagggaacataagggagtacatattggaaatgtctaatctcgcatcaaaactcaaggcactgaagttagaacttcctgaagatttaattgtgc |
28723807 |
T |
|
| Q |
481 |
a |
481 |
Q |
| |
|
| |
|
|
| T |
28723808 |
a |
28723808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 485
Target Start/End: Complemental strand, 23070502 - 23070341
Alignment:
| Q |
324 |
aagaatgataaggttgagataagtagtgttttatttaagctcatttcaatgaatttataaaggtaaatgaaacataagggagtacttat-agaaatgtct |
422 |
Q |
| |
|
||||||||||||||||| | |||| |||||||| || || |||||||||| | | ||||||||| | ||||||||||| ||| | | |||||||||| |
|
|
| T |
23070502 |
aagaatgataaggttgaaactagtattgttttatccaaacttatttcaatgagct-acaaaggtaaagggaacataagggaatacatcttagaaatgtct |
23070404 |
T |
|
| Q |
423 |
aatctcgcatcaaaactcaagacattgaagttagagtttcatgaagaattgattgtgcacttg |
485 |
Q |
| |
|
||||| || | ||||||||| || ||| ||||| ||| |||||| || |||||||||||| |
|
|
| T |
23070403 |
aatcttgccttcaaactcaaggcacggaatttagaacttcttgaagatttaattgtgcacttg |
23070341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 265
Target Start/End: Original strand, 25461738 - 25461788
Alignment:
| Q |
215 |
tatgtgcctcgtaattatcaagagatccatacctgaagtgattaggggctc |
265 |
Q |
| |
|
|||||||||| | |||||||| | ||||||||||||| ||||||||||||| |
|
|
| T |
25461738 |
tatgtgcctcatgattatcaaaatatccatacctgaaatgattaggggctc |
25461788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University