View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21037_low_1 (Length: 467)
Name: NF21037_low_1
Description: NF21037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21037_low_1 |
 | |
|
| [»] scaffold0685 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 29549777 - 29549327
Alignment:
| Q |
1 |
aaatttcagtagcaaatagaagttagtaccatttattaagttaagaattaaagtggaactttcgttaagctctgattgtaagagaggccctaatgccact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29549777 |
aaatttcagtagcaaatagaagttagtaccatttattaagttaagaattaaagtggaactttcgttaagctctgattgtaagagaggccctaatgccact |
29549678 |
T |
|
| Q |
101 |
gctggattcataacaacgtggtcgatgttgttttctgttagaaatttcgttgcagcttcctcagctgaagtctttgcaaattgataccacatctgaaata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29549677 |
gctggattcataacaacgtggtcgatgttgttttctgttagaaattttgttgcagcttcctcagctgaagtctttgcaaattgataccacatctgaaata |
29549578 |
T |
|
| Q |
201 |
tgtaactttaaatgagcattattataacaactaaaatccacattaatttttgatcaataattgtctagtgaatggaaaaggggcacattacatatatata |
300 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29549577 |
tgtaactttacattagcattattataacaactaaaatcaacattaatttttgatcaataattgtctagtgaatggaaaaggggcacattacatatatata |
29549478 |
T |
|
| Q |
301 |
gtaccttattttgccataagaaatcttgattcgaaaaccacgtttcatcaacttcaacttccggggttcgaggttttccagtatataaagctgtggcaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29549477 |
gtaccttattttgccataagaaatcttgattcgaaaaccacgtttcatcaacttcaacttccggggttcgaggttttccagtatataaagctgtggcaat |
29549378 |
T |
|
| Q |
401 |
agaagaagttaaaacaactcgttgtacagatggtgattttgcacatgactt |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29549377 |
agaagaagttaaaacaactcgttgtacagatggtgattttgcacatgactt |
29549327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 27 - 201
Target Start/End: Complemental strand, 29556290 - 29556116
Alignment:
| Q |
27 |
taccatttattaagttaagaattaaagtggaactttcgttaagctctgattgtaagagaggccctaatgccactgctggattcataacaacgtggtcgat |
126 |
Q |
| |
|
|||| |||||||||| || |||||| | ||||||| |||||||||||| ||||||||||||||||| | ||| ||||||||||||||||||| ||| || |
|
|
| T |
29556290 |
taccctttattaagtcaaaaattaaggaggaacttccgttaagctctggttgtaagagaggccctatcgtcaccgctggattcataacaacgtagtcaat |
29556191 |
T |
|
| Q |
127 |
gttgttttctgttagaaatttcgttgcagcttcctcagctgaagtctttgcaaattgataccacatctgaaatat |
201 |
Q |
| |
|
|| |||||||||||||||||| ||||| ||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
29556190 |
gtcgttttctgttagaaattttgttgctgcttcctcagctgaaacctttgcaaattggtaccacatctgaaatat |
29556116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 363 - 448
Target Start/End: Complemental strand, 29555872 - 29555787
Alignment:
| Q |
363 |
ggggttcgaggttttccagtatataaagctgtggcaatagaagaagttaaaacaactcgttgtacagatggtgattttgcacatga |
448 |
Q |
| |
|
|||||||||||| |||| |||| |||||||| ||||| |||||||| |||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
29555872 |
ggggttcgaggtgttccgttatacaaagctgtagcaatggaagaagtaaaaacaacccgtttcacagatggtgattttgcacatga |
29555787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 451
Target Start/End: Complemental strand, 29559413 - 29559257
Alignment:
| Q |
292 |
atatatatagtaccttattttgccataagaaatcttgattcgaaaaccacgtttcatcaacttcaacttccggggttcgaggttttccagtatataaagc |
391 |
Q |
| |
|
|||||||||||||||| | || |||||| |||||| |||| |||||||| || ||||||||| ||||||| || |||| || ||||| |||||| | | |
|
|
| T |
29559413 |
atatatatagtaccttttgttcccataataaatctggatttgaaaaccatgtctcatcaactacaacttcaggagttctgggccttccattatatacaac |
29559314 |
T |
|
| Q |
392 |
tgtggcaatagaagaagttaaaacaactcgttgtacagatggtgattttgcacatgactt |
451 |
Q |
| |
|
| ||||| |||||||| |||||| |||| |||||||| ||||| ||||||||||| |
|
|
| T |
29559313 |
agatgcaat---agaagttataacaacgcgtttgacagatggcgatttcgcacatgactt |
29559257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0685 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0685
Description:
Target: scaffold0685; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 27 - 201
Target Start/End: Complemental strand, 5389 - 5215
Alignment:
| Q |
27 |
taccatttattaagttaagaattaaagtggaactttcgttaagctctgattgtaagagaggccctaatgccactgctggattcataacaacgtggtcgat |
126 |
Q |
| |
|
|||| |||||||||| || |||||| | ||||||| |||||||||||| ||||||||||||||||| | ||| ||||||||||||||||||| ||| || |
|
|
| T |
5389 |
taccctttattaagtcaaaaattaaggaggaacttccgttaagctctggttgtaagagaggccctatcgtcaccgctggattcataacaacgtagtcaat |
5290 |
T |
|
| Q |
127 |
gttgttttctgttagaaatttcgttgcagcttcctcagctgaagtctttgcaaattgataccacatctgaaatat |
201 |
Q |
| |
|
|| |||||||||||||||||| ||||| ||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
5289 |
gtcgttttctgttagaaattttgttgctgcttcctcagctgaaacctttgcaaattggtaccacatctgaaatat |
5215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 448
Target Start/End: Complemental strand, 26101974 - 26101926
Alignment:
| Q |
400 |
tagaagaagttaaaacaactcgttgtacagatggtgattttgcacatga |
448 |
Q |
| |
|
||||||||||||| |||||||||| ||||||| ||| ||||||||||| |
|
|
| T |
26101974 |
tagaagaagttaagacaactcgtttcacagatgttgactttgcacatga |
26101926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University