View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21037_low_2 (Length: 318)

Name: NF21037_low_2
Description: NF21037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21037_low_2
NF21037_low_2
[»] scaffold0279 (1 HSPs)
scaffold0279 (19-248)||(12810-13041)
[»] chr7 (2 HSPs)
chr7 (19-248)||(27556048-27556279)
chr7 (176-246)||(12727592-12727662)
[»] chr6 (5 HSPs)
chr6 (176-246)||(3546864-3546934)
chr6 (176-242)||(10192643-10192709)
chr6 (176-246)||(8461799-8461869)
chr6 (167-224)||(13664392-13664449)
chr6 (194-248)||(34338298-34338352)
[»] chr4 (5 HSPs)
chr4 (167-239)||(20380432-20380504)
chr4 (176-246)||(39913936-39914006)
chr4 (176-246)||(7189942-7190012)
chr4 (66-126)||(29277965-29278025)
chr4 (96-171)||(29446512-29446587)
[»] chr3 (5 HSPs)
chr3 (183-246)||(20970424-20970487)
chr3 (176-246)||(47166105-47166175)
chr3 (176-246)||(3580645-3580715)
chr3 (176-246)||(11072272-11072342)
chr3 (39-117)||(34273885-34273963)
[»] chr2 (2 HSPs)
chr2 (167-242)||(17678508-17678583)
chr2 (98-130)||(35246785-35246817)
[»] scaffold0238 (2 HSPs)
scaffold0238 (176-226)||(30-80)
scaffold0238 (176-246)||(4230-4300)
[»] chr5 (3 HSPs)
chr5 (96-153)||(41248831-41248888)
chr5 (176-246)||(28682972-28683042)
chr5 (167-224)||(39324572-39324629)
[»] scaffold1455 (1 HSPs)
scaffold1455 (104-161)||(1609-1666)
[»] chr8 (2 HSPs)
chr8 (167-224)||(23595169-23595226)
chr8 (167-224)||(23604091-23604148)


Alignment Details
Target: scaffold0279 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 12810 - 13041
Alignment:
Q  19 agggatctaagtcaaattatgtgtagataccaatgcctagacatagagttaagtttgcactcaca--cacacttttcggtcatatgtcattgaatcaatt 116  Q
    ||||||| ||||||||| ||||||| |||| || |  |||| ||| |||||| |||||| |||||  ||||||||||| |||||||||||||||||||||    
T  12810 agggatccaagtcaaatcatgtgtaaatactaacgtttagatataaagttaactttgcattcacacacacacttttcgatcatatgtcattgaatcaatt 12909  T
Q  117 ggttattttgcttagtattgaaagtcaattcatacaatgaatttcacgttgtttgacttgacattcttcctaatgatttgaggcttgatttctatcggga 216  Q
    ||||||||||||||| ||||||||| |||||||| ||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12910 ggttattttgcttagcattgaaagttaattcatataatgaatttcatgtcgtttggcttgacattcttcctaatgatttgaggcttgatttctatcggga 13009  T
Q  217 tagatgtgaactttcaaactacagattccctt 248  Q
    |||||||| |||| ||||||| ||||||||||    
T  13010 tagatgtggacttccaaactagagattccctt 13041  T

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Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 27556279 - 27556048
Alignment:
Q  19 agggatctaagtcaaattatgtgtagataccaatgcctagacatagagttaagtttgcactcacacacac--ttttcggtcatatgtcattgaatcaatt 116  Q
    ||||||| ||||||||| ||||||| |||| || |  |||| ||| |||||| |||||| ||||||||||  |||||| |||||||||||||||||||||    
T  27556279 agggatccaagtcaaatcatgtgtaaatactaacgtttagatataaagttaactttgcattcacacacacacttttcgatcatatgtcattgaatcaatt 27556180  T
Q  117 ggttattttgcttagtattgaaagtcaattcatacaatgaatttcacgttgtttgacttgacattcttcctaatgatttgaggcttgatttctatcggga 216  Q
    ||||||||||||||| ||||||||| |||||||| ||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27556179 ggttattttgcttagcattgaaagttaattcatataatgaatttcatgtcgtttggcttgacattcttcctaatgatttgaggcttgatttctatcggga 27556080  T
Q  217 tagatgtgaactttcaaactacagattccctt 248  Q
    |||||||| |||| ||||||| ||||||||||    
T  27556079 tagatgtggacttccaaactagagattccctt 27556048  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 246
Target Start/End: Original strand, 12727592 - 12727662
Alignment:
Q  176 gacattcttcctaatgatttgaggcttgatttctatcgggatagatgtgaactttcaaactacagattccc 246  Q
    |||| |||||||| |||||| |||||| |||||||| ||||||| |||  |||| |||| |||||||||||    
T  12727592 gacactcttcctattgatttaaggcttcatttctatagggatagctgtacacttccaaattacagattccc 12727662  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 246
Target Start/End: Complemental strand, 3546934 - 3546864
Alignment:
Q  176 gacattcttcctaatgatttgaggcttgatttctatcgggatagatgtgaactttcaaactacagattccc 246  Q
    |||| |||||||| |||||| ||||||||||||||| |||||||||||| |||| |||| |||||||||||    
T  3546934 gacactcttcctattgatttaaggcttgatttctatagggatagatgtggacttccaaattacagattccc 3546864  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 176 - 242
Target Start/End: Original strand, 10192643 - 10192709
Alignment:
Q  176 gacattcttcctaatgatttgaggcttgatttctatcgggatagatgtgaactttcaaactacagat 242  Q
    |||| |||||||| |||||| ||||||||||||||| |||||||||||| |||| |||| |||||||    
T  10192643 gacactcttcctattgatttaaggcttgatttctatagggatagatgtggacttccaaattacagat 10192709  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 246
Target Start/End: Original strand, 8461799 - 8461869
Alignment:
Q  176 gacattcttcctaatgatttgaggcttgatttctatcgggatagatgtgaactttcaaactacagattccc 246  Q
    |||| |||||||| |||||| ||||||||||||||| |||||||||||| |||| || | || ||||||||    
T  8461799 gacactcttcctattgatttaaggcttgatttctatagggatagatgtggacttccatattatagattccc 8461869  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 13664449 - 13664392
Alignment:
Q  167 gtttgacttgacattcttcctaatgatttgaggcttgatttctatcgggatagatgtg 224  Q
    ||||||||||||| ||| || | ||| |||||||||||||||| ||||||||||||||    
T  13664449 gtttgacttgacactctaccaagtgaattgaggcttgatttctttcgggatagatgtg 13664392  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 248
Target Start/End: Complemental strand, 34338352 - 34338298
Alignment:
Q  194 ttgaggcttgatttctatcgggatagatgtgaactttcaaactacagattccctt 248  Q
    |||||||||||||||| ||| |||||||||||| |||| || |||||||| ||||    
T  34338352 ttgaggcttgatttctttcgagatagatgtgaattttctaattacagatttcctt 34338298  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 239
Target Start/End: Complemental strand, 20380504 - 20380432
Alignment:
Q  167 gtttgacttgacattcttcctaatgatttgaggcttgatttctatcgggatagatgtgaactttcaaactaca 239  Q
    ||||| ||||||| |||||| |||||||||||||||| ||||| |||||||||||||| |||| | |||||||    
T  20380504 gtttggcttgacactcttccaaatgatttgaggcttgctttctttcgggatagatgtggacttcctaactaca 20380432  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 176 - 246
Target Start/End: Complemental strand, 39914006 - 39913936
Alignment:
Q  176 gacattcttcctaatgatttgaggcttgatttctatcgggatagatgtgaactttcaaactacagattccc 246  Q
    |||| |||||||| |||||| ||||||||||||||| | |||||||||| |||| |||| |||||||||||    
T  39914006 gacactcttcctattgatttaaggcttgatttctatagtgatagatgtggacttccaaattacagattccc 39913936  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 246
Target Start/End: Original strand, 7189942 - 7190012
Alignment:
Q  176 gacattcttcctaatgatttgaggcttgatttctatcgggatagatgtgaactttcaaactacagattccc 246  Q
    |||| |||||||  |||||| || |||||||||||| |||||||||||| |||| |||| |||||||||||    
T  7189942 gacactcttccttttgatttaagacttgatttctatagggatagatgtggacttccaaattacagattccc 7190012  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 29278025 - 29277965
Alignment:
Q  66 gttaagtttgcactcacacacacttttcggtcatatgtcattgaatcaattggttattttg 126  Q
    |||||||||||| ||||||||||| | | |||||||||| ||||||||||  |||||||||    
T  29278025 gttaagtttgcattcacacacactatccagtcatatgtcgttgaatcaatcagttattttg 29277965  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 29446512 - 29446587
Alignment:
Q  96 tcatatgtcattgaatcaattggttattttgcttagtattgaaagtcaattcatacaatgaatttcacgttgtttg 171  Q
    |||||||||| ||||||||| | ||||||||||||| ||  |||||  ||| |||||||| ||||||||| |||||    
T  29446512 tcatatgtcactgaatcaatcgattattttgcttagcatcaaaagttgattgatacaatgtatttcacgtcgtttg 29446587  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 20970487 - 20970424
Alignment:
Q  183 ttcctaatgatttgaggcttgatttctatcgggatagatgtgaactttcaaactacagattccc 246  Q
    |||||| |||||| ||||||||||||||| |||||||||||| |||| |||| |||||||||||    
T  20970487 ttcctattgatttaaggcttgatttctatagggatagatgtggacttccaaattacagattccc 20970424  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 176 - 246
Target Start/End: Complemental strand, 47166175 - 47166105
Alignment:
Q  176 gacattcttcctaatgatttgaggcttgatttctatcgggatagatgtgaactttcaaactacagattccc 246  Q
    ||||||||||||| |||||| ||||||||||||||| |||||||||||| || | |||| || ||||||||    
T  47166175 gacattcttcctattgatttaaggcttgatttctatagggatagatgtggacctccaaattatagattccc 47166105  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 246
Target Start/End: Complemental strand, 3580715 - 3580645
Alignment:
Q  176 gacattcttcctaatgatttgaggcttgatttctatcgggatagatgtgaactttcaaactacagattccc 246  Q
    |||| |||||||| || ||| ||||||||||||||| |||||||||||| || | |||| || ||||||||    
T  3580715 gacactcttcctattgctttaaggcttgatttctatagggatagatgtggacctccaaattatagattccc 3580645  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 246
Target Start/End: Original strand, 11072272 - 11072342
Alignment:
Q  176 gacattcttcctaatgatttgaggcttgatttctatcgggatagatgtgaactttcaaactacagattccc 246  Q
    |||| |||||||| |||||| |||||| |||||||| |||||| ||||  |||| |||| |||||||||||    
T  11072272 gacactcttcctattgatttaaggcttcatttctatagggataaatgtagacttccaaattacagattccc 11072342  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 34273885 - 34273963
Alignment:
Q  39 gtgtagataccaatgcctagacatagagttaagtttgcactcacacacacttttcggtcatatgtcattgaatcaattg 117  Q
    ||||| |||| ||||| ||||||||  |||| ||||||| | ||| |||||  | ||||||||||||||||||||||||    
T  34273885 gtgtatatactaatgcttagacatatggttaggtttgcatttacatacactgctaggtcatatgtcattgaatcaattg 34273963  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 242
Target Start/End: Complemental strand, 17678583 - 17678508
Alignment:
Q  167 gtttgacttgacattcttcctaatgatttgaggcttgatttctatcgggatagatgtgaactttcaaactacagat 242  Q
    ||||| || |||| |||||||| |||||| ||||||||||||||| |||||||||||| |||| |||| |||||||    
T  17678583 gtttggctagacactcttcctattgatttaaggcttgatttctatagggatagatgtggacttccaaattacagat 17678508  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 130
Target Start/End: Original strand, 35246785 - 35246817
Alignment:
Q  98 atatgtcattgaatcaattggttattttgctta 130  Q
    ||||||||||||||||||| |||||||||||||    
T  35246785 atatgtcattgaatcaattagttattttgctta 35246817  T

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Target: scaffold0238 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 80 - 30
Alignment:
Q  176 gacattcttcctaatgatttgaggcttgatttctatcgggatagatgtgaa 226  Q
    |||| |||||||| |||||| ||||||||||||||| ||||||||||||||    
T  80 gacactcttcctattgatttaaggcttgatttctatagggatagatgtgaa 30  T

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Target: scaffold0238; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 246
Target Start/End: Original strand, 4230 - 4300
Alignment:
Q  176 gacattcttcctaatgatttgaggcttgatttctatcgggatagatgtgaactttcaaactacagattccc 246  Q
    |||| ||| |||| |||||| || |||||||||||| |||||||||||| |||| |||| || ||||||||    
T  4230 gacactctacctattgatttaagacttgatttctatagggatagatgtggacttccaaattatagattccc 4300  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 153
Target Start/End: Complemental strand, 41248888 - 41248831
Alignment:
Q  96 tcatatgtcattgaatcaattggttattttgcttagtattgaaagtcaattcatacaa 153  Q
    |||||||||||||||| |||| ||||||||||| ||||| |||||| |||| ||||||    
T  41248888 tcatatgtcattgaataaattagttattttgctcagtatcgaaagttaattgatacaa 41248831  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 246
Target Start/End: Complemental strand, 28683042 - 28682972
Alignment:
Q  176 gacattcttcctaatgatttgaggcttgatttctatcgggatagatgtgaactttcaaactacagattccc 246  Q
    |||| |||||||| |||||| |||||| |||||||| ||||||| |||  |||| |||| |||||||||||    
T  28683042 gacactcttcctattgatttaaggcttcatttctatagggatagctgtagacttccaaattacagattccc 28682972  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 39324629 - 39324572
Alignment:
Q  167 gtttgacttgacattcttcctaatgatttgaggcttgatttctatcgggatagatgtg 224  Q
    ||||| ||||||||||| || | ||| |||||||||||||||| ||| ||||||||||    
T  39324629 gtttggcttgacattctaccaagtgaattgaggcttgatttctttcgagatagatgtg 39324572  T

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Target: scaffold1455 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1455
Description:

Target: scaffold1455; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 1666 - 1609
Alignment:
Q  104 cattgaatcaattggttattttgcttagtattgaaagtcaattcatacaatgaatttc 161  Q
    |||||||| ||||||||||||| |||||||| | || |||||| |||||||| |||||    
T  1666 cattgaatgaattggttatttttcttagtatcggaaatcaattgatacaatggatttc 1609  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 23595169 - 23595226
Alignment:
Q  167 gtttgacttgacattcttcctaatgatttgaggcttgatttctatcgggatagatgtg 224  Q
    ||||||||||||| ||| || | ||| |||||||||||||||| ||| ||||||||||    
T  23595169 gtttgacttgacactctaccaagtgaattgaggcttgatttctttcgagatagatgtg 23595226  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 23604091 - 23604148
Alignment:
Q  167 gtttgacttgacattcttcctaatgatttgaggcttgatttctatcgggatagatgtg 224  Q
    ||||||||||||| ||| || | ||| |||||||||||||||| ||| ||||||||||    
T  23604091 gtttgacttgacactctaccaagtgaattgaggcttgatttctttcgagatagatgtg 23604148  T

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