View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21037_low_3 (Length: 227)
Name: NF21037_low_3
Description: NF21037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21037_low_3 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 41757732 - 41757953
Alignment:
| Q |
6 |
acgaacaagtaatcaagtttgataagagaatatgtgattattggaaaatgatacaaatccataattataaaaagttcctatctataattaagttgatggg |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41757732 |
acgaacaagtaatcaagtttgataagagaatatgtgattattggaaaatgatacaaatccataattataaaaagttcctatctataattaagttgatgga |
41757831 |
T |
|
| Q |
106 |
gagaagattgcaacagtgtgtagacagcattccaaccattttgagaagggtgaacattgtcccaaaagaatgaaagctttggtttctcacataaactgta |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41757832 |
gagaagattgcaacagtgtgtagacagcatgccaaccattttgagaagggtgaacattgtcccaaaagaatgaaagctttggtttctcacataaactgta |
41757931 |
T |
|
| Q |
206 |
tttcttttctccattatcatcc |
227 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
41757932 |
tttcttttctccattatcatcc |
41757953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 41753448 - 41753569
Alignment:
| Q |
106 |
gagaagattgcaacagtgtgtagacagcattccaaccattttgagaagggtgaacattgtcccaaaagaatgaaagctttggtttctcacataaactgta |
205 |
Q |
| |
|
||||||||||||||| ||| |||||||| | |||||||||||||||||| || ||| |||||||||||||||||||| |||||||||||||| ||| || |
|
|
| T |
41753448 |
gagaagattgcaacaatgtatagacagcttgccaaccattttgagaaggatgtacaccgtcccaaaagaatgaaagctctggtttctcacatacactata |
41753547 |
T |
|
| Q |
206 |
tttcttttctccattatcatcc |
227 |
Q |
| |
|
|||||||||||| ||||||||| |
|
|
| T |
41753548 |
tttcttttctcctttatcatcc |
41753569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 226
Target Start/End: Original strand, 41747112 - 41747206
Alignment:
| Q |
132 |
gcattccaaccattttgagaagggtgaacattgtcccaaaagaatgaaagctttggtttctcacataaactgtatttcttttctccattatcatc |
226 |
Q |
| |
|
|||| |||||||||||||||||| || | ||||| |||| ||||||||||| |||||| ||||||| ||| ||||||||| |||| || ||||| |
|
|
| T |
41747112 |
gcatgccaaccattttgagaaggatggaaattgttccaatagaatgaaagccctggtttatcacatacactatatttctttgctcctttctcatc |
41747206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 179
Target Start/End: Original strand, 41732367 - 41732495
Alignment:
| Q |
50 |
aaaatgatacaaatccataattataaaaagttcctatctataattaagttgatggggagaagattgcaacagtgtgtagacagcattccaaccattttga |
149 |
Q |
| |
|
||||||||||||||| ||||| || ||||||| | ||| ||||| ||||| | ||||||| ||||||| | ||| || ||| ||||||||||||| |
|
|
| T |
41732367 |
aaaatgatacaaatctataatgatcaaaagtttttctcttgaatta-gttgaccgagagaagactgcaacattaggtaaacttcataccaaccattttga |
41732465 |
T |
|
| Q |
150 |
gaagggtgaacattgtcccaaaagaatgaa |
179 |
Q |
| |
|
||||||||||| |||||||||||| |||| |
|
|
| T |
41732466 |
gaagggtgaactgtgtcccaaaagagtgaa |
41732495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University