View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21037_low_4 (Length: 223)
Name: NF21037_low_4
Description: NF21037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21037_low_4 |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 12 - 206
Target Start/End: Original strand, 29799693 - 29799887
Alignment:
| Q |
12 |
gagaagaagggttagcactatcttatattccataaagctcaagtttctaccaacacacattcttcctccaaacccaaaaggtaagtatcccatgttttgg |
111 |
Q |
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| T |
29799693 |
gagaagaagggttaacactatcttatactccataaagctcaagtttctaccaacacacattcttcctccaaatccaaaaggtaagtatcccattttttgg |
29799792 |
T |
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| Q |
112 |
ttgcatccaccatttacatcgtccatgaacctctctggtcgaaactcattcacattttctccccacaacgatgagtcgtggtgcatcgctacaac |
206 |
Q |
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| T |
29799793 |
ttgcatccaccatttacatcatccatgaatctttctggtcgaaactcatttacattttctccccacaatgatgagtcatggtgcattgcaacaac |
29799887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 22 - 203
Target Start/End: Original strand, 45410639 - 45410820
Alignment:
| Q |
22 |
gttagcactatcttatattccataaagctcaagtttctaccaacacacattcttcctccaaacccaaaaggtaagtatcccatgttttggttgcatccac |
121 |
Q |
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| T |
45410639 |
gttaacactatcttgtactccataaatgtcaagtttctaccaacacacattctccctccaaatccaaaaggtaaataccccatcttgtgtttgcatccac |
45410738 |
T |
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| Q |
122 |
catttacatcgtccatgaacctctctggtcgaaactcattcacattttctccccacaacgatgagtcgtggtgcatcgctac |
203 |
Q |
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| T |
45410739 |
cattaacatcatccatgaacctctctggtttgaactcattcacatcatctccccataattctgggtcatggtgcatcgctac |
45410820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 203
Target Start/End: Original strand, 45419948 - 45420129
Alignment:
| Q |
22 |
gttagcactatcttatattccataaagctcaagtttctaccaacacacattcttcctccaaacccaaaaggtaagtatcccatgttttggttgcatccac |
121 |
Q |
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| T |
45419948 |
gttaacactatcttgtactccataaatgtcaagtttctaccaacacacattctccctccaaatccaaaaggtaaataccccatcttgtgtttgcatccac |
45420047 |
T |
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| Q |
122 |
catttacatcgtccatgaacctctctggtcgaaactcattcacattttctccccacaacgatgagtcgtggtgcatcgctac |
203 |
Q |
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| T |
45420048 |
cattaacatcatccatgaacctctctggtttgaaatcattcacatcatctccccataattctgggtcatggtgcatcgctac |
45420129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 26835145 - 26835293
Alignment:
| Q |
28 |
actatcttatattccataaagctcaagtttctaccaacacacattcttcctccaaacccaaaaggtaagtatcccatgttttggttgcatccaccattta |
127 |
Q |
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| T |
26835145 |
actatcttgtactccataaatgtcaagtttctaccaacacacattctccctccaaatccaaaaggtaaataccccatcttgtgtttgcatccaccattaa |
26835244 |
T |
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| Q |
128 |
catcgtccatgaacctctctggtcgaaactcattcacattttctcccca |
176 |
Q |
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| T |
26835245 |
catcatcgacgaacctctctggtttgaactcattcacatcatctcccca |
26835293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 63457 - 63594
Alignment:
| Q |
13 |
agaagaagggttagcactatcttatattccataaagctcaagtttctaccaacacacattcttcctccaaacccaaaaggtaagtatcccatgttttggt |
112 |
Q |
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| T |
63457 |
agaagtagggttaacactatgttatactccatgaagatcaagttcctaccaatacatgctctccctccaaaaccaaaaggcaagtaccccattgtgtggt |
63556 |
T |
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| Q |
113 |
tgcatccaccatttacatcgtccatgaacctctctggt |
150 |
Q |
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| T |
63557 |
ggcattccccattggcatcattcatgaacctctctggt |
63594 |
T |
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