View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21038_high_15 (Length: 263)

Name: NF21038_high_15
Description: NF21038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21038_high_15
NF21038_high_15
[»] chr4 (3 HSPs)
chr4 (158-241)||(29078947-29079030)
chr4 (10-79)||(29078878-29078947)
chr4 (137-206)||(5469960-5470029)
[»] chr7 (6 HSPs)
chr7 (136-239)||(16981212-16981315)
chr7 (61-118)||(27386897-27386954)
chr7 (58-118)||(37134380-37134440)
chr7 (59-98)||(38177747-38177786)
chr7 (137-208)||(48204150-48204221)
chr7 (58-102)||(31322031-31322075)
[»] chr3 (8 HSPs)
chr3 (137-241)||(52103611-52103715)
chr3 (59-118)||(43624333-43624392)
chr3 (134-232)||(1772867-1772966)
chr3 (59-114)||(36011001-36011056)
chr3 (139-209)||(8922889-8922959)
chr3 (139-209)||(41325827-41325897)
chr3 (65-120)||(24704879-24704934)
chr3 (130-209)||(34328384-34328463)
[»] chr1 (2 HSPs)
chr1 (137-209)||(49385088-49385160)
chr1 (132-232)||(49385752-49385853)
[»] chr2 (3 HSPs)
chr2 (137-232)||(41282926-41283021)
chr2 (59-111)||(28716264-28716315)
chr2 (137-205)||(41282637-41282704)
[»] scaffold0178 (1 HSPs)
scaffold0178 (137-213)||(18484-18561)
[»] chr8 (6 HSPs)
chr8 (137-209)||(38443037-38443109)
chr8 (69-120)||(16314011-16314062)
chr8 (137-198)||(17625637-17625698)
chr8 (76-120)||(15901508-15901552)
chr8 (137-183)||(38443618-38443664)
chr8 (142-223)||(44870820-44870901)
[»] chr5 (6 HSPs)
chr5 (59-118)||(43222185-43222244)
chr5 (53-98)||(3440919-3440964)
chr5 (59-118)||(14733613-14733672)
chr5 (61-99)||(35650396-35650434)
chr5 (137-198)||(128664-128725)
chr5 (61-118)||(9465802-9465859)
[»] chr6 (1 HSPs)
chr6 (137-232)||(28548366-28548461)


Alignment Details
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 158 - 241
Target Start/End: Original strand, 29078947 - 29079030
Alignment:
Q  158 tttgcaccatttactccattttccattatggatgtgcgacatgtggaaaaattaaaactaagggttaggattaaacgatttagg 241  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  29078947 tttgcaccatttactccattttccattatggatgtgtgacatgtagaaaaattaaaactaagggttaggattaaacgatttagg 29079030  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 29078878 - 29078947
Alignment:
Q  10 aagaatattaaagatatactccatttataaggatgtaaccctcaaaaaagagttgagattctctcaattt 79  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||  ||| |||||| ||||| ||||    
T  29078878 aagaaaattaaagatatactccatttataaggatgtaaccctcaaaattgagatgagatcctctccattt 29078947  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 5470029 - 5469960
Alignment:
Q  137 tccatctttactccatttaagtttgcaccatttactccattttccattatggatgtgcgacatgtggaaa 206  Q
    ||||||||| |||||||||||||||| | |||||  |||||| |||||||||||||| ||||||||||||    
T  5470029 tccatctttgctccatttaagtttgctcaatttatcccatttaccattatggatgtgtgacatgtggaaa 5469960  T

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Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 136 - 239
Target Start/End: Complemental strand, 16981315 - 16981212
Alignment:
Q  136 atccatctttactccatttaagtttgcaccatttactccattttccattatggatgtgcgacatgtggaaaaattaaaactaagggttaggattaaacga 235  Q
    |||||||||| |||||||||||||||| ||| |||| |||||| | |||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||    
T  16981315 atccatctttgctccatttaagtttgctccaattaccccatttactattatgaatgtgtgacatgtggaaaaactaaaattaagggttaggattaaacga 16981216  T
Q  236 ttta 239  Q
    ||||    
T  16981215 ttta 16981212  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 27386897 - 27386954
Alignment:
Q  61 gttgagattctctcaatttattaaaataaatggagattgtcaatataaaagagataga 118  Q
    |||||||| ||||| |||||| |||||||||||||||||| | ||| |||||||||||    
T  27386897 gttgagatcctctccatttataaaaataaatggagattgttattatgaaagagataga 27386954  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 37134440 - 37134380
Alignment:
Q  58 agagttgagattctctcaatttattaaaataaatggagattgtcaatataaaagagataga 118  Q
    ||||||||||| ||||| |||||| |||||||| ||||||||||| ||| | |||||||||    
T  37134440 agagttgagatcctctccatttataaaaataaacggagattgtcattatgatagagataga 37134380  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 38177747 - 38177786
Alignment:
Q  59 gagttgagattctctcaatttattaaaataaatggagatt 98  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  38177747 gagttgagattctctccatttattaaaataaatagagatt 38177786  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 208
Target Start/End: Original strand, 48204150 - 48204221
Alignment:
Q  137 tccatctttactccatttaagtttgcaccatttactccattttccattatggatgtgcgacatgtggaaaaa 208  Q
    ||||||||| |||||||||||||||| |||||||  | |||| |||| ||||||||  ||||||||| ||||    
T  48204150 tccatctttgctccatttaagtttgctccatttatcctatttaccatcatggatgtatgacatgtggcaaaa 48204221  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 31322031 - 31322075
Alignment:
Q  58 agagttgagattctctcaatttattaaaataaatggagattgtca 102  Q
    ||||||||||| ||||| |||||| |||||||||| |||||||||    
T  31322031 agagttgagatcctctccatttataaaaataaatgaagattgtca 31322075  T

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Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 137 - 241
Target Start/End: Original strand, 52103611 - 52103715
Alignment:
Q  137 tccatctttactccatttaagtttgcaccatttactccattttccattatggatgtgcgacatgtggaaaaattaaaactaagggttaggattaaacgat 236  Q
    ||||||||| || |||||| |||||| |||||||| |||||| | || ||||||||| || ||||||||||| |||||||||||||||||||||||||||    
T  52103611 tccatctttgcttcatttaggtttgctccatttaccccatttactatcatggatgtgtgatatgtggaaaaactaaaactaagggttaggattaaacgat 52103710  T
Q  237 ttagg 241  Q
    |||||    
T  52103711 ttagg 52103715  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 118
Target Start/End: Original strand, 43624333 - 43624392
Alignment:
Q  59 gagttgagattctctcaatttattaaaataaatggagattgtcaatataaaagagataga 118  Q
    |||||||||| ||||| |||||| |||||||||||||||||||| |||||||||||||||    
T  43624333 gagttgagatcctctctatttataaaaataaatggagattgtcattataaaagagataga 43624392  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 232
Target Start/End: Original strand, 1772867 - 1772966
Alignment:
Q  134 gaatccatctttactccatttaagtttgcaccatttactccattttccattatggatgtgcgacatgtggaaaaat-taaaactaagggttaggattaaa 232  Q
    |||||||| ||| |||||||||||||||| | |||||| |||||| | || |||||| || ||||||||| |||||  ||||| ||||||| ||||||||    
T  1772867 gaatccatatttgctccatttaagtttgctcaatttaccccatttactatcatggatatgtgacatgtggcaaaatagaaaaccaagggttgggattaaa 1772966  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 36011056 - 36011001
Alignment:
Q  59 gagttgagattctctcaatttattaaaataaatggagattgtcaatataaaagaga 114  Q
    |||||||||| |||||||||||| |||||||||||||||||| | ||| |||||||    
T  36011056 gagttgagatcctctcaatttataaaaataaatggagattgtaattatgaaagaga 36011001  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 209
Target Start/End: Original strand, 8922889 - 8922959
Alignment:
Q  139 catctttactccatttaagtttgcaccatttactccattttccattatggatgtgcgacatgtggaaaaat 209  Q
    ||||||||||||||||| |||||| | |||||| ||||||  ||| ||||||||| ||||||||| |||||    
T  8922889 catctttactccatttaggtttgctcaatttaccccatttatcatcatggatgtgtgacatgtggcaaaat 8922959  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 209
Target Start/End: Original strand, 41325827 - 41325897
Alignment:
Q  139 catctttactccatttaagtttgcaccatttactccattttccattatggatgtgcgacatgtggaaaaat 209  Q
    ||||||||||||||||| |||||| | |||||| ||||||  ||| ||||||||| ||||||||| |||||    
T  41325827 catctttactccatttaggtttgctcaatttaccccatttatcatcatggatgtgtgacatgtggcaaaat 41325897  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 24704879 - 24704934
Alignment:
Q  65 agattctctcaatttattaaaataaatggagattgtcaatataaaagagatagata 120  Q
    |||||||||| |||||| ||||||| |||||||||||  ||| |||||||||||||    
T  24704879 agattctctccatttataaaaataattggagattgtcgttatgaaagagatagata 24704934  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 209
Target Start/End: Original strand, 34328384 - 34328463
Alignment:
Q  130 aattgaatccatctttactccatttaagtttgcaccatttactccattttccattatggatgtgcgacatgtggaaaaat 209  Q
    |||||| | |||||||  |||||||| |||||| ||||||||||| ||| |||| || |||||| ||||||||| |||||    
T  34328384 aattgagttcatctttgttccatttaggtttgctccatttactccgtttaccataatagatgtgtgacatgtggtaaaat 34328463  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 49385088 - 49385160
Alignment:
Q  137 tccatctttactccatttaagtttgcaccatttactccattttccattatggatgtgcgacatgtggaaaaat 209  Q
    ||||||||| ||||||||||||||||| ||||||| |||||| | || ||||||||| |||||||||||||||    
T  49385088 tccatctttgctccatttaagtttgcatcatttaccccatttacaatcatggatgtgtgacatgtggaaaaat 49385160  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 232
Target Start/End: Complemental strand, 49385853 - 49385752
Alignment:
Q  132 ttgaatccatctttactccatttaagtttgcaccatttactccattttccattatggatgtgcgacatgtggaaaaat-taaaactaagggttaggatta 230  Q
    |||| ||||||||| ||| ||||| | ||||||||||||| |||||| |||| |||||| || ||||||||| |||||  |||||||||||||  |||||    
T  49385853 ttgagtccatctttgctcaatttaggattgcaccatttaccccatttaccatcatggatatgtgacatgtggcaaaatagaaaactaagggttgagatta 49385754  T
Q  231 aa 232  Q
    ||    
T  49385753 aa 49385752  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 232
Target Start/End: Complemental strand, 41283021 - 41282926
Alignment:
Q  137 tccatctttactccatttaagtttgcaccatttactccattttccattatggatgtgcgacatgtggaaaaattaaaactaagggttaggattaaa 232  Q
    |||||||||||||||||||||||||| | ||||||  ||||| |||| ||||||||| ||||||||||| || | |||| |||||||  |||||||    
T  41283021 tccatctttactccatttaagtttgctcaatttacatcatttaccatcatggatgtgtgacatgtggaataaattaaacaaagggttgagattaaa 41282926  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 28716264 - 28716315
Alignment:
Q  59 gagttgagattctctcaatttattaaaataaatggagattgtcaatataaaag 111  Q
    |||||||||| ||||| ||||||||||||||||||||||| ||| ||| ||||    
T  28716264 gagttgagat-ctctccatttattaaaataaatggagattatcattatgaaag 28716315  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 41282637 - 41282704
Alignment:
Q  137 tccatctttactccatttaagtttgcaccatttactccattttccattatggatgtgcgacatgtggaa 205  Q
    ||||||||| ||| |||||||||||| |||||||| |||||| |||| || |||||| || ||||||||    
T  41282637 tccatctttgctc-atttaagtttgctccatttacaccatttaccatcatagatgtgtgatatgtggaa 41282704  T

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Target: scaffold0178 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 213
Target Start/End: Original strand, 18484 - 18561
Alignment:
Q  137 tccatctttactccatttaagtttgcaccatttactccattttccattatggatgtgcgacatgtggaa-aaattaaa 213  Q
    |||||||||||||||||||||||||  | |||||| |||||| |||| ||||||||| ||||||||||| ||||||||    
T  18484 tccatctttactccatttaagtttgttcaatttacaccatttaccatcatggatgtgtgacatgtggaataaattaaa 18561  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 38443037 - 38443109
Alignment:
Q  137 tccatctttactccatttaagtttgcaccatttactccattttccattatggatgtgcgacatgtggaaaaat 209  Q
    ||||||||| |||||||||||| ||| |||||||| |||||| |||| ||||||||| ||||||||| |||||    
T  38443037 tccatctttgctccatttaagtctgctccatttaccccatttaccatcatggatgtgtgacatgtggcaaaat 38443109  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 16314062 - 16314011
Alignment:
Q  69 tctctcaatttattaaaataaatggagattgtcaatataaaagagatagata 120  Q
    |||||| ||||||||||||||||||||||||||| ||| |||||||||||||    
T  16314062 tctctccatttattaaaataaatggagattgtcattatgaaagagatagata 16314011  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 17625637 - 17625698
Alignment:
Q  137 tccatctttactccatttaagtttgcaccatttactccattttccattatggatgtgcgaca 198  Q
    ||||||||| ||||||||| | ||||||||||||| |||||| || | ||||||||||||||    
T  17625637 tccatctttgctccatttaggcttgcaccatttaccccatttaccttcatggatgtgcgaca 17625698  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 15901552 - 15901508
Alignment:
Q  76 atttattaaaataaatggagattgtcaatataaaagagatagata 120  Q
    |||||||||||||||||||||||| || ||| |||||||||||||    
T  15901552 atttattaaaataaatggagattgccattatgaaagagatagata 15901508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 38443664 - 38443618
Alignment:
Q  137 tccatctttactccatttaagtttgcaccatttactccattttccat 183  Q
    ||||||||| |||||||||||||||| |||||||| |||||| ||||    
T  38443664 tccatctttgctccatttaagtttgctccatttaccccatttaccat 38443618  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 223
Target Start/End: Complemental strand, 44870901 - 44870820
Alignment:
Q  142 ctttactccatttaagtttgcaccatttactccattttccattatggatgtgcgacatgtggaaaaattaaaactaagggtt 223  Q
    |||| |||||||||||||||| | ||||||  ||||| | |||||||||||  ||||||||| |||||  |||| |||||||    
T  44870901 ctttgctccatttaagtttgctcgatttaccacatttactattatggatgtctgacatgtggtaaaatagaaaccaagggtt 44870820  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 43222244 - 43222185
Alignment:
Q  59 gagttgagattctctcaatttattaaaataaatggagattgtcaatataaaagagataga 118  Q
    |||||||||| ||||| |||||| |||||||||||||||||||| ||| |||||||||||    
T  43222244 gagttgagatactctccatttataaaaataaatggagattgtcattatgaaagagataga 43222185  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 3440964 - 3440919
Alignment:
Q  53 aaaaaagagttgagattctctcaatttattaaaataaatggagatt 98  Q
    ||||||| |||||||| ||||| |||||||||||||||||||||||    
T  3440964 aaaaaagggttgagatcctctccatttattaaaataaatggagatt 3440919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 14733672 - 14733613
Alignment:
Q  59 gagttgagattctctcaatttattaaaataaatggagattgtcaatataaaagagataga 118  Q
    |||||||||| ||||| |||||| |||||||||| ||||||||| ||  |||||||||||    
T  14733672 gagttgagatcctctccatttataaaaataaatgaagattgtcattaggaaagagataga 14733613  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 35650434 - 35650396
Alignment:
Q  61 gttgagattctctcaatttattaaaataaatggagattg 99  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  35650434 gttgagatcctctccatttattaaaataaatggagattg 35650396  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 128664 - 128725
Alignment:
Q  137 tccatctttactccatttaagtttgcaccatttactccattttccattatggatgtgcgaca 198  Q
    ||||||||| ||||||||| | |||||||||||| ||||||| || | || |||||||||||    
T  128664 tccatctttgctccatttaggcttgcaccatttattccatttaccttcatagatgtgcgaca 128725  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 9465859 - 9465802
Alignment:
Q  61 gttgagattctctcaatttattaaaataaatggagattgtcaatataaaagagataga 118  Q
    |||||||| ||||  |||||| ||||||||||||||||| || ||| |||||||||||    
T  9465859 gttgagatcctcttcatttataaaaataaatggagattgccattatgaaagagataga 9465802  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 232
Target Start/End: Complemental strand, 28548461 - 28548366
Alignment:
Q  137 tccatctttactccatttaagtttgcaccatttactccattttccattatggatgtgcgacatgtggaaaaattaaaactaagggttaggattaaa 232  Q
    |||||||||||||||||||  ||||| | |||||   |||||  ||||||||||||| |||||||||  ||| |||||| |||||| |||||||||    
T  28548461 tccatctttactccatttacttttgctcaatttatctcatttatcattatggatgtgtgacatgtggccaaaataaaaccaagggtcaggattaaa 28548366  T

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