View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21038_high_20 (Length: 236)
Name: NF21038_high_20
Description: NF21038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21038_high_20 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 43532402 - 43532182
Alignment:
| Q |
16 |
gtacatgtcattaagagggcacaagacgtttgtctgttgcattcaatcacacatctgctactcaaccgatcaagcgaaaaatttcatttgaaactaaaat |
115 |
Q |
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| T |
43532402 |
gtacatgtcattaagagggcacaagatgtttgtctgttgcattcaatcacacatctgctactcaaccgatcaagcgaaaaatttcatttgaaactaaaat |
43532303 |
T |
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| Q |
116 |
tgtttgtaacccaagaaacgcaactaagcatgggaattacggagctgctaaatgagttcatgaaagtaaaaacactgcaattggatagtgtgagttccaa |
215 |
Q |
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| T |
43532302 |
tgtttgtaacccaagaaacgcaactaagcatgggaattacggagctgctaaatgagttcatgaaagtaaaaacactgcaattggatagtgtgagttccaa |
43532203 |
T |
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| Q |
216 |
ttattatgcagcatatggacc |
236 |
Q |
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| T |
43532202 |
ttattatgcagcatatggacc |
43532182 |
T |
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