View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21038_high_21 (Length: 234)
Name: NF21038_high_21
Description: NF21038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21038_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 27273070 - 27272866
Alignment:
| Q |
19 |
caaattacaattgcaagagacgtttcatccacaaataaagacgaaagcatgacagggtttcaccaagtttctatctttcttatcccttttatcatctctc |
118 |
Q |
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| T |
27273070 |
caaattacaattgcaagagacgtttcatccacagataaagacgaaaacatgacagggtttcatcaagtttctatctttcttatcccttttatcatctctc |
27272971 |
T |
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| Q |
119 |
aaagaaataatgaaaatgtttgagaaaatcaaacaaggcacaattnnnnnnnnntttgctggtccattataatgtaacccgacccccttttgatcttctt |
218 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
27272970 |
aaaggaataatgaaaatgcttgagaaaatcaaacaaggcacaattaaaaaaaaa-atgttggtccattataatgtaacccgacccccttttgatcttctt |
27272872 |
T |
|
| Q |
219 |
ctcact |
224 |
Q |
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| |||| |
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| T |
27272871 |
cccact |
27272866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 27282671 - 27282622
Alignment:
| Q |
114 |
ctctcaaagaaataatgaaaatgtttgagaaaatcaaacaaggcacaatt |
163 |
Q |
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| T |
27282671 |
ctctcaaaggaataatgaaaatgttagagaaacccaaacaaggtacaatt |
27282622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 6077835 - 6077932
Alignment:
| Q |
19 |
caaattacaattgcaagag--acgtttcatccacaaataaagacgaaagcatgacagggtttcaccaagtttctatctttcttatcccttttatcatc |
114 |
Q |
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| T |
6077835 |
caaattacaattgcaagagagacgtttcatccaaagataaagaggaaagcatgacagggtttcaccaagtttctatatttcttttcccttttatcatc |
6077932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 43651664 - 43651575
Alignment:
| Q |
19 |
caaattacaattgcaagagacgtttcatccacaaataaagacgaaagcatgacagggtttcaccaagtttctatctttcttatcccttttat |
110 |
Q |
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||||||||||||||||||||| ||||||||| | ||| ||| |||| ||||||| ||||||||| | ||||| ||||||||| ||||||| |
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| T |
43651664 |
caaattacaattgcaagagacatttcatccaaagatagagaggaaa-catgaca-ggtttcaccgaagatctatatttcttatctcttttat |
43651575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 21114873 - 21114784
Alignment:
| Q |
19 |
caaattacaattgcaagagacgtttcatccacaaataaagacgaaagcatgacagggtttcaccaagtttctatctttcttatcccttttat |
110 |
Q |
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||||||||||||||||||||| ||||||||| | ||| ||| |||| ||||||| ||||||||| | ||||| ||||||||| ||||||| |
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| T |
21114873 |
caaattacaattgcaagagacatttcatccaaagatagagaggaaa-catgaca-ggtttcaccgaagatctatatttcttatctcttttat |
21114784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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