View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21038_high_3 (Length: 634)

Name: NF21038_high_3
Description: NF21038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21038_high_3
NF21038_high_3
[»] chr8 (8 HSPs)
chr8 (88-479)||(45298855-45299252)
chr8 (534-613)||(9854916-9854995)
chr8 (548-614)||(38697170-38697236)
chr8 (552-614)||(42793717-42793779)
chr8 (525-614)||(38696299-38696388)
chr8 (534-589)||(28291295-28291350)
chr8 (534-612)||(9853567-9853645)
chr8 (529-614)||(28291401-28291486)
[»] chr7 (9 HSPs)
chr7 (528-614)||(41329506-41329592)
chr7 (534-613)||(41328219-41328298)
chr7 (534-613)||(39981317-39981396)
chr7 (534-614)||(32653463-32653543)
chr7 (534-584)||(32653733-32653783)
chr7 (550-611)||(35296857-35296918)
chr7 (534-589)||(669449-669504)
chr7 (528-598)||(26146759-26146829)
chr7 (534-614)||(38539671-38539751)
[»] chr4 (14 HSPs)
chr4 (532-614)||(36243517-36243599)
chr4 (534-614)||(8363425-8363505)
chr4 (534-612)||(56156935-56157013)
chr4 (534-614)||(26495122-26495202)
chr4 (534-613)||(26496346-26496425)
chr4 (534-614)||(36244803-36244883)
chr4 (534-614)||(56157532-56157612)
chr4 (525-604)||(20620130-20620209)
chr4 (534-613)||(52137426-52137505)
chr4 (534-600)||(20625554-20625620)
chr4 (544-614)||(669681-669751)
chr4 (528-614)||(40723221-40723308)
chr4 (528-613)||(52138832-52138916)
chr4 (545-613)||(28590942-28591010)
[»] chr3 (5 HSPs)
chr3 (534-614)||(13621994-13622074)
chr3 (534-611)||(49380993-49381070)
chr3 (534-613)||(13620920-13620999)
chr3 (534-608)||(49379701-49379775)
chr3 (569-611)||(14744098-14744140)
[»] chr1 (12 HSPs)
chr1 (534-614)||(14479551-14479631)
chr1 (534-613)||(51445590-51445669)
chr1 (534-614)||(28051643-28051723)
chr1 (534-613)||(14478266-14478345)
chr1 (534-614)||(28050321-28050401)
chr1 (534-614)||(51446879-51446959)
chr1 (548-614)||(40533640-40533706)
chr1 (548-614)||(40634727-40634793)
chr1 (202-246)||(6802709-6802753)
chr1 (534-586)||(12667339-12667391)
chr1 (534-614)||(15746802-15746882)
chr1 (534-614)||(48527534-48527614)
[»] scaffold0114 (1 HSPs)
scaffold0114 (528-614)||(38534-38620)
[»] chr5 (9 HSPs)
chr5 (534-614)||(11796569-11796649)
chr5 (525-604)||(23325903-23325982)
chr5 (534-600)||(23334017-23334083)
chr5 (534-583)||(11797600-11797649)
chr5 (531-614)||(8521252-8521335)
chr5 (535-614)||(32757826-32757905)
chr5 (544-614)||(10978315-10978385)
chr5 (534-602)||(8523794-8523862)
chr5 (534-614)||(32759084-32759164)
[»] chr2 (12 HSPs)
chr2 (534-614)||(28610022-28610102)
chr2 (534-613)||(4921095-4921174)
chr2 (534-614)||(4919827-4919907)
chr2 (534-613)||(28611289-28611368)
chr2 (535-614)||(8321279-8321358)
chr2 (548-614)||(19397544-19397610)
chr2 (532-614)||(19398836-19398918)
chr2 (557-611)||(45699523-45699577)
chr2 (534-614)||(2276281-2276361)
chr2 (534-614)||(34147136-34147216)
chr2 (545-602)||(34512825-34512882)
chr2 (534-614)||(34148396-34148476)
[»] chr6 (2 HSPs)
chr6 (534-613)||(11722786-11722865)
chr6 (564-604)||(21777530-21777570)
[»] scaffold0219 (2 HSPs)
scaffold0219 (534-611)||(6895-6972)
scaffold0219 (534-614)||(8226-8306)
[»] scaffold0011 (2 HSPs)
scaffold0011 (534-614)||(128627-128707)
scaffold0011 (534-614)||(127433-127513)
[»] scaffold2071 (1 HSPs)
scaffold2071 (534-614)||(717-797)
[»] scaffold1251 (1 HSPs)
scaffold1251 (534-614)||(1121-1201)


Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 88 - 479
Target Start/End: Complemental strand, 45299252 - 45298855
Alignment:
Q  88 cttacggcgtatataatcttaaatggattcaaaacatagatgtctcatgttatgaagaagaaatcgaaggacgctgctcgtcatcttctgccccatcctt 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||    
T  45299252 cttacggcgtatataatcttaaatggattcaaaacatagatgtctcatgttatgaagaagaaatcgaagaacgctgctcgtcatcttctgccccattttt 45299153  T
Q  188 tgaagaagaattatttgttacgttctatagagaaattagatcaagaaaggaaggtccaagttttgagggatcttgtcaaaacatctcctccaacaaaggt 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45299152 tgaagaagaattatttgttacgttctatagagaaattagatcaagaaaggaaggtccaagttttgagggatcttgtcaaaacatctcctccaacaaaggt 45299053  T
Q  288 gcatgtccctctatataggacctatccctacaatggtcatcattcttttgttcgtctcaaccatggcaacacaagaatggtgtcaacgttgagtattgtt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  45299052 gcatgtccctctatataggacctatccctacaatggtcatcattcttttgttcgtctcaaccatggcaacaccagaatggtgtcaacgttgagtattgtt 45298953  T
Q  388 gtccgtccacaaacaagccgtgatagttaggcatacttgca------acaccttaagtttcacaattgtgggaatataatgtgttgaatgagtgtatg 479  Q
    |||||||||||||||||||||||||||||| ||||||||||      ||||||||||||| | |||||||||||||||||||||||||| ||||||||    
T  45298952 gtccgtccacaaacaagccgtgatagttagacatacttgcacctttgacaccttaagttttataattgtgggaatataatgtgttgaataagtgtatg 45298855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 534 - 613
Target Start/End: Complemental strand, 9854995 - 9854916
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcc 613  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||| |||||  |||||||||||||    
T  9854995 cttaattggacatttggtcctctaaataattatgtgtttacattttggtcccataaattgtaaaatccacattttggtcc 9854916  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 548 - 614
Target Start/End: Original strand, 38697170 - 38697236
Alignment:
Q  548 tggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    ||||||| ||||||||||| | ||||||||||||||  ||||||||||||||  |||||||||||||    
T  38697170 tggtcccttaaataattatcaatttacattttggtctcataaattataaaaccaacattttggtccc 38697236  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 552 - 614
Target Start/End: Original strand, 42793717 - 42793779
Alignment:
Q  552 cccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    ||||||||||||||  |||||| |||||||||| ||||||| ||||| | |||||||||||||    
T  42793717 cccctaaataattaccagtttatattttggtcccataaattgtaaaattaacattttggtccc 42793779  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 525 - 614
Target Start/End: Original strand, 38696299 - 38696388
Alignment:
Q  525 ttttattgacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    |||| ||| |||||| || ||||||||||||||| ||||| | ||||| ||||||||||  |||| | ||||||||||  ||||||||||    
T  38696299 ttttcttggcttaataggccatttggtcccctaattaattttaagttttcattttggtctcataactaataaaactcatgttttggtccc 38696388  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 534 - 589
Target Start/End: Original strand, 28291295 - 28291350
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataa 589  Q
    ||||||||||  ||||||||||||| ||||||| ||||| ||||||||||| ||||    
T  28291295 cttaattggatttttggtcccctaagtaattatcagttttcattttggtcccataa 28291350  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 612
Target Start/End: Original strand, 9853567 - 9853645
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtc 612  Q
    |||||||| ||||| | |||  |||||||||||  ||||| |||||||||| ||||||| ||||||| | |||||||||    
T  9853567 cttaattgaacattagctcctttaaataattatatgtttatattttggtcccataaattgtaaaactaatattttggtc 9853645  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 529 - 614
Target Start/End: Complemental strand, 28291486 - 28291401
Alignment:
Q  529 attgacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    |||| ||||||||||  ||| ||||||||||||||||| ||||| || |||||||| |||| |  ||||| | |||||| ||||||    
T  28291486 attggcttaattggatttttagtcccctaaataattatcagttttcactttggtcccataactcgtaaaattaacatttcggtccc 28291401  T

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Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 528 - 614
Target Start/End: Complemental strand, 41329592 - 41329506
Alignment:
Q  528 tattgacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  41329592 tattggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtccc 41329506  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 534 - 613
Target Start/End: Original strand, 41328219 - 41328298
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcc 613  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||    
T  41328219 cttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcc 41328298  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 534 - 613
Target Start/End: Original strand, 39981317 - 39981396
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcc 613  Q
    |||||||||||||||| ||| |||||||||| || |||||||||||||||| ||||||| ||||| ||||||||||||||    
T  39981317 cttaattggacatttgatcctctaaataattgtgcgtttacattttggtcccataaattgtaaaattcacattttggtcc 39981396  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 534 - 614
Target Start/End: Original strand, 32653463 - 32653543
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    |||||||||| |||| ||||| |||||||||||| |||||||||||||||  ||||||| |||||||||||||| ||||||    
T  32653463 cttaattggatatttagtcccttaaataattatgcgtttacattttggtctcataaattgtaaaactcacatttcggtccc 32653543  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 534 - 584
Target Start/End: Complemental strand, 32653783 - 32653733
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcc 584  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  32653783 cttaattggacatttggtcccctaaataattatgtatttacattttggtcc 32653733  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 550 - 611
Target Start/End: Complemental strand, 35296918 - 35296857
Alignment:
Q  550 gtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggt 611  Q
    |||| ||||||||||   ||||||||||||||||||||||||| ||||||||||||||||||    
T  35296918 gtcctctaaataatttgtagtttacattttggtcctataaattgtaaaactcacattttggt 35296857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 534 - 589
Target Start/End: Complemental strand, 669504 - 669449
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataa 589  Q
    ||||||||||  ||||||||||||| ||||||| ||||| ||||||||||| ||||    
T  669504 cttaattggatttttggtcccctaagtaattatcagttttcattttggtcccataa 669449  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 528 - 598
Target Start/End: Complemental strand, 26146829 - 26146759
Alignment:
Q  528 tattgacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaa 598  Q
    ||||| ||||||||||| ||||||||||||| |||||    |||| ||||||| ||||||||||| |||||    
T  26146829 tattggcttaattggacttttggtcccctaactaatttgttgttttcattttgatcctataaattttaaaa 26146759  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 614
Target Start/End: Original strand, 38539671 - 38539751
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    |||||| || |||||| |||| ||| |||||   ||||| ||||||||||| |||||| ||||||||||  ||||||||||    
T  38539671 cttaataggtcatttgatcccttaattaatttcaagttttcattttggtcccataaataataaaactcatgttttggtccc 38539751  T

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Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 532 - 614
Target Start/End: Original strand, 36243517 - 36243599
Alignment:
Q  532 gacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36243517 gacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtccc 36243599  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 534 - 614
Target Start/End: Complemental strand, 8363505 - 8363425
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8363505 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtccc 8363425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 534 - 612
Target Start/End: Original strand, 56156935 - 56157013
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtc 612  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  56156935 cttaattggatatttggtcccctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttggtc 56157013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 534 - 614
Target Start/End: Original strand, 26495122 - 26495202
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    |||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  26495122 cttaattgaatatttggtcccctaaataattatgagtttacattttgctcctataaattgtaaaactcacattttggtccc 26495202  T

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Target: chr4; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 534 - 613
Target Start/End: Complemental strand, 26496425 - 26496346
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcc 613  Q
    |||||||||||||||||||| |||| |||||||| |||||||||||||||| ||||||| ||||||||||||||||||||    
T  26496425 cttaattggacatttggtcctctaactaattatgtgtttacattttggtcccataaattgtaaaactcacattttggtcc 26496346  T

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Target: chr4; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 534 - 614
Target Start/End: Complemental strand, 36244883 - 36244803
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||| ||| ||||||| ||||||||||||||| |||||    
T  36244883 cttaattggatatttggtccccaaaataattatgagtttacattttgatcccataaattgtaaaactcacatttttgtccc 36244803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 534 - 614
Target Start/End: Complemental strand, 56157612 - 56157532
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    |||||||||| ||||||||| ||||||||||||| ||||||||||||||   ||||||| |||||||||||||||||||||    
T  56157612 cttaattggatatttggtcctctaaataattatgcgtttacattttggtttcataaattgtaaaactcacattttggtccc 56157532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 525 - 604
Target Start/End: Original strand, 20620130 - 20620209
Alignment:
Q  525 ttttattgacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcaca 604  Q
    |||| ||| ||||||||||| |||||||| |||||||||||||||||||||||||||||| |||| || |||||||||||    
T  20620130 tttttttggcttaattggacctttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaactcaca 20620209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 534 - 613
Target Start/End: Original strand, 52137426 - 52137505
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcc 613  Q
    |||||||||| ||||||||| ||||||||||||| |||||||||||||||| ||||||| ||||||  ||||||||||||    
T  52137426 cttaattggatatttggtcctctaaataattatgtgtttacattttggtcccataaattgtaaaaccaacattttggtcc 52137505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 534 - 600
Target Start/End: Complemental strand, 20625620 - 20625554
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaact 600  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| |||| || |||||||    
T  20625620 cttaattggacatttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaact 20625554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 544 - 614
Target Start/End: Complemental strand, 669751 - 669681
Alignment:
Q  544 catttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    |||||||||||| || ||||| | | ||| ||||||||||| |||| | ||||||||||||||||||||||    
T  669751 catttggtcccccaattaattttcaattttcattttggtcccataattaataaaactcacattttggtccc 669681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 528 - 614
Target Start/End: Original strand, 40723221 - 40723308
Alignment:
Q  528 tattgacttaattggacatttggtcccctaaataattatg-agtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    ||||| |||||| || ||||||||||||||| ||||| || | ||| ||||||||||| |||| | ||||||||||  ||||||||||    
T  40723221 tattggcttaataggtcatttggtcccctaattaattttgcaattttcattttggtcccataactaataaaactcatgttttggtccc 40723308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 528 - 613
Target Start/End: Complemental strand, 52138916 - 52138832
Alignment:
Q  528 tattgacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcc 613  Q
    ||||| ||||||| |||||||| ||| ||||||||||||| ||||| |||||| ||  ||||||| ||| || | |||||||||||    
T  52138916 tattggcttaattcgacatttgatcctctaaataattatgcgtttatattttgatcacataaattgtaagac-cccattttggtcc 52138832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 545 - 613
Target Start/End: Complemental strand, 28591010 - 28590942
Alignment:
Q  545 atttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcc 613  Q
    |||||||||| |||||||||   || || ||||||||||| |||||| ||||||||||  |||||||||    
T  28591010 atttggtcccttaaataatttccagctttcattttggtcccataaataataaaactcatgttttggtcc 28590942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 534 - 614
Target Start/End: Complemental strand, 13622074 - 13621994
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13622074 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtccc 13621994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 534 - 611
Target Start/End: Complemental strand, 49381070 - 49380993
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggt 611  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  49381070 cttaattggatatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcatattttggt 49380993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 534 - 613
Target Start/End: Original strand, 13620920 - 13620999
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcc 613  Q
    ||||||| |||||||||||| ||||||||||||| |||||||||||||||  ||||||| ||||||||||||||||||||    
T  13620920 cttaatttgacatttggtcctctaaataattatgcgtttacattttggtctcataaattgtaaaactcacattttggtcc 13620999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 534 - 608
Target Start/End: Original strand, 49379701 - 49379775
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacatttt 608  Q
    |||||||||||||||||||| ||||||||||||| ||||| |||||||||| ||||||| |||||||||||||||    
T  49379701 cttaattggacatttggtcctctaaataattatgcgtttatattttggtcccataaattgtaaaactcacatttt 49379775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 569 - 611
Target Start/End: Original strand, 14744098 - 14744140
Alignment:
Q  569 gtttacattttggtcctataaattataaaactcacattttggt 611  Q
    |||||||||||||||  ||||||| ||||||||||||||||||    
T  14744098 gtttacattttggtctcataaattgtaaaactcacattttggt 14744140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 5e-33; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 534 - 614
Target Start/End: Complemental strand, 14479631 - 14479551
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  14479631 cttaattggacatttggtcccctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttggtccc 14479551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 534 - 613
Target Start/End: Original strand, 51445590 - 51445669
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcc 613  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||    
T  51445590 cttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcc 51445669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 534 - 614
Target Start/End: Complemental strand, 28051723 - 28051643
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    |||||||||| ||||| | |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  28051723 cttaattggatatttgattccctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttggtccc 28051643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 534 - 613
Target Start/End: Original strand, 14478266 - 14478345
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcc 613  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||| ||| ||||||| ||||||||||||||||||||    
T  14478266 cttaattggacatttggtcctctaaataattatgtgtttacattttgatcccataaattgtaaaactcacattttggtcc 14478345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 534 - 614
Target Start/End: Original strand, 28050321 - 28050401
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    ||||||| ||||||||||||| |||||||||||| |||||||||||||||| ||||||| |||||  ||||||||||||||    
T  28050321 cttaattagacatttggtcccttaaataattatgtgtttacattttggtcccataaattgtaaaatccacattttggtccc 28050401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 534 - 614
Target Start/End: Complemental strand, 51446959 - 51446879
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    |||||||||||||||||||| |||||||||||||  ||||||||||||||  ||||||| |||||| ||||||||||||||    
T  51446959 cttaattggacatttggtcctctaaataattatgcatttacattttggtcacataaattgtaaaacccacattttggtccc 51446879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 548 - 614
Target Start/End: Complemental strand, 40533706 - 40533640
Alignment:
Q  548 tggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    ||||||||||||||||||| ||||||||||||||| | ||||||| ||||||  |||||||||||||    
T  40533706 tggtcccctaaataattatcagtttacattttggttccataaattgtaaaaccaacattttggtccc 40533640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 548 - 614
Target Start/End: Complemental strand, 40634793 - 40634727
Alignment:
Q  548 tggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    |||||||||||||||||   ||||||||||||| ||| |||||| |||||||||||||||| |||||    
T  40634793 tggtcccctaaataatttgcagtttacattttgatccgataaatcataaaactcacattttcgtccc 40634727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 6802753 - 6802709
Alignment:
Q  202 ttgttacgttctatagagaaattagatcaagaaaggaaggtccaa 246  Q
    |||||||||| |||| ||| |||||||||||||||||||||||||    
T  6802753 ttgttacgttgtataaagagattagatcaagaaaggaaggtccaa 6802709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 586
Target Start/End: Complemental strand, 12667391 - 12667339
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtccta 586  Q
    ||||||||||  ||| |||| |||||||||||| ||||| |||||||||||||    
T  12667391 cttaattggatttttagtcctctaaataattatcagttttcattttggtccta 12667339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 614
Target Start/End: Complemental strand, 15746882 - 15746802
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    |||||| || ||||||||||||||| |||||   | ||| ||||||||||| |||| | ||||||||||  ||||||||||    
T  15746882 cttaataggtcatttggtcccctaattaatttccaattttcattttggtcccataagtaataaaactcatgttttggtccc 15746802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 614
Target Start/End: Original strand, 48527534 - 48527614
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    ||||||||||  ||||||||||||| |||||    |||||||||||||||| |||| |  ||||| | |||||||||||||    
T  48527534 cttaattggatttttggtcccctaagtaatttgttgtttacattttggtcccataactcgtaaaattaacattttggtccc 48527614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 71; Significance: 8e-32; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 528 - 614
Target Start/End: Original strand, 38534 - 38620
Alignment:
Q  528 tattgacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||    
T  38534 tattggcttaattggacatttggtcccctaaataattatgagtttccattttggtcccataaattgtaaaactcacattttggtccc 38620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 534 - 614
Target Start/End: Original strand, 11796569 - 11796649
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||    
T  11796569 cttaattggacatttggtcccctaaataattatgagtttacattttggtcccataaattgtaaaactcatattttggtccc 11796649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 525 - 604
Target Start/End: Original strand, 23325903 - 23325982
Alignment:
Q  525 ttttattgacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcaca 604  Q
    |||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||| || |||||||||||    
T  23325903 tttttttggcttaattggacatttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaactcaca 23325982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 534 - 600
Target Start/End: Complemental strand, 23334083 - 23334017
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaact 600  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| |||| || |||||||    
T  23334083 cttaattggacatttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaact 23334017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 534 - 583
Target Start/End: Complemental strand, 11797649 - 11797600
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtc 583  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11797649 cttaattggacatttggtcccctaaataattatgagtttacattttggtc 11797600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 531 - 614
Target Start/End: Original strand, 8521252 - 8521335
Alignment:
Q  531 tgacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    ||||||||| || ||||||||||| ||| |||||   ||||| ||||||||||| |||| | ||||||||||  ||||||||||    
T  8521252 tgacttaataggtcatttggtcccttaattaatttcaagttttcattttggtcccataactaataaaactcatgttttggtccc 8521335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 535 - 614
Target Start/End: Original strand, 32757826 - 32757905
Alignment:
Q  535 ttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    ||||| || |||||||||||  ||||||||   ||||| ||||||||||| |||||| ||||||||||  ||||||||||    
T  32757826 ttaataggtcatttggtccctcaaataatttccagttttcattttggtcccataaataataaaactcatgttttggtccc 32757905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 544 - 614
Target Start/End: Complemental strand, 10978385 - 10978315
Alignment:
Q  544 catttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    ||||||||||||||| |||||   | ||| |||||||||||||||||| ||||||| ||| ||| ||||||    
T  10978385 catttggtcccctaattaatttccaattttcattttggtcctataaataataaaacccacgtttcggtccc 10978315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 602
Target Start/End: Complemental strand, 8523862 - 8523794
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactca 602  Q
    |||||| || ||||||||||||||| |||||   ||||| ||||||||||| |||| | ||||||||||    
T  8523862 cttaataggtcatttggtcccctaattaatttcaagttttcattttggtcccataactaataaaactca 8523794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 614
Target Start/End: Complemental strand, 32759164 - 32759084
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    |||||| || |||||||||||  |||||||| | ||||| |||||| || | |||||| ||||||||||  ||||||||||    
T  32759164 cttaataggtcatttggtccctcaaataattttcagttttcattttagttccataaataataaaactcatgttttggtccc 32759084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 3e-28; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 534 - 614
Target Start/End: Original strand, 28610022 - 28610102
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||    
T  28610022 cttaattggacatttggtcacctaaataattatgagtttacattttggtcccataaattgtaaaattcacattttggtccc 28610102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 534 - 613
Target Start/End: Complemental strand, 4921174 - 4921095
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcc 613  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||| |||| ||||||| ||||||||||||||||||||    
T  4921174 cttaattggacatttggtcctctaaataattatgcgtttacattttagtcccataaattgtaaaactcacattttggtcc 4921095  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 534 - 614
Target Start/End: Original strand, 4919827 - 4919907
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    |||||||||||||||||||| |||||||||||||  |||||| |||||||| |||||||||||||  ||||||||||||||    
T  4919827 cttaattggacatttggtcctctaaataattatgcatttacaatttggtcccataaattataaaatccacattttggtccc 4919907  T

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Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 534 - 613
Target Start/End: Complemental strand, 28611368 - 28611289
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcc 613  Q
    |||||||||| ||||||||| ||||||||||||| |||||||||||||||| ||||||| ||||| ||| ||||||||||    
T  28611368 cttaattggatatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaattcatattttggtcc 28611289  T

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Target: chr2; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 535 - 614
Target Start/End: Complemental strand, 8321358 - 8321279
Alignment:
Q  535 ttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    ||||||||||||||| ||| ||||||||||||| |||||||||||||||| ||||||| ||||||  ||||||| |||||    
T  8321358 ttaattggacatttgatcctctaaataattatgcgtttacattttggtcccataaattttaaaaccaacattttagtccc 8321279  T

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Target: chr2; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 548 - 614
Target Start/End: Original strand, 19397544 - 19397610
Alignment:
Q  548 tggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    ||||||||||||||||||  ||||||||||||||||| ||||||| ||||||| |||||||||||||    
T  19397544 tggtcccctaaataattaccagtttacattttggtcccataaattttaaaactaacattttggtccc 19397610  T

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Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 532 - 614
Target Start/End: Complemental strand, 19398918 - 19398836
Alignment:
Q  532 gacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    ||||||||||| | |||||| |||||||||||||   |||||||||||||||| ||||||| ||||||  |||||||||||||    
T  19398918 gacttaattggtcttttggttccctaaataattaccggtttacattttggtcccataaattgtaaaacctacattttggtccc 19398836  T

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Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 557 - 611
Target Start/End: Original strand, 45699523 - 45699577
Alignment:
Q  557 aaataattatgagtttacattttggtcctataaattataaaactcacattttggt 611  Q
    ||||||||||| |||||||||||||||| ||||||| ||||| ||||||||||||    
T  45699523 aaataattatgtgtttacattttggtcccataaattgtaaaattcacattttggt 45699577  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 534 - 614
Target Start/End: Original strand, 2276281 - 2276361
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    |||||| || |||||||||||  |||||||| | ||||| |||||| ||||||||| | ||||||||||  ||||||||||    
T  2276281 cttaataggtcatttggtccctcaaataattttcagttttcattttagtcctataagtaataaaactcatgttttggtccc 2276361  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 534 - 614
Target Start/End: Original strand, 34147136 - 34147216
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    |||||| || |||||||||||  |||||||| | ||||| ||||||||||| |||| | ||||||||||  ||||||||||    
T  34147136 cttaataggtcatttggtccctcaaataattttcagttttcattttggtcccataagtaataaaactcatgttttggtccc 34147216  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 545 - 602
Target Start/End: Original strand, 34512825 - 34512882
Alignment:
Q  545 atttggtcccctaaataattatgagtttacattttggtcctataaattataaaactca 602  Q
    |||||||||||||| ||||||  ||||| ||||||||||| |||| | ||||||||||    
T  34512825 atttggtcccctaattaattaccagttttcattttggtcccataattaataaaactca 34512882  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 614
Target Start/End: Complemental strand, 34148476 - 34148396
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    |||||| || |||||||||||  |||||||| | ||||| |||||| || | |||||| ||||||||||  ||||||||||    
T  34148476 cttaataggtcatttggtccctcaaataattttcagttttcattttagttccataaataataaaactcatgttttggtccc 34148396  T

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Target: chr6 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 534 - 613
Target Start/End: Original strand, 11722786 - 11722865
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcc 613  Q
    |||||||||||||||| ||| ||||||||||||| |||||||||||| ||| ||||||| ||||||||||||||||||||    
T  11722786 cttaattggacatttgatcctctaaataattatgtgtttacattttgatcccataaattgtaaaactcacattttggtcc 11722865  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 564 - 604
Target Start/End: Complemental strand, 21777570 - 21777530
Alignment:
Q  564 tatgagtttacattttggtcctataaattataaaactcaca 604  Q
    ||||||||||||||||||||| |||| || |||||||||||    
T  21777570 tatgagtttacattttggtcccataagttgtaaaactcaca 21777530  T

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Target: scaffold0219 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 534 - 611
Target Start/End: Original strand, 6895 - 6972
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggt 611  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||| ||||||  ||||||||||    
T  6895 cttaattggacatttggtcctctaaataattatgtgtttacattttggtcccataaattgtaaaaccaacattttggt 6972  T

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Target: scaffold0219; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 614
Target Start/End: Complemental strand, 8306 - 8226
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    |||||||| || ||||||||||||| ||||| |  |||||||||||||||| |||| |  |||||   |||||||||||||    
T  8306 cttaattgaacttttggtcccctaagtaattctttgtttacattttggtcccataactcgtaaaatcaacattttggtccc 8226  T

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Target: scaffold0011 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 534 - 614
Target Start/End: Complemental strand, 128707 - 128627
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    |||||| || ||||||||||| ||| ||||| | ||||| |||||||||||||| | | ||||||||||  ||||||||||    
T  128707 cttaataggtcatttggtcccttaattaattttaagttttcattttggtcctattactaataaaactcatgttttggtccc 128627  T

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Target: scaffold0011; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 614
Target Start/End: Original strand, 127433 - 127513
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    |||||| || ||||||||||||||| |||||   ||||| | ||||||||| |||| | ||||||||||  ||||||||||    
T  127433 cttaataggtcatttggtcccctaattaatttcaagttttcgttttggtcccataactaataaaactcatgttttggtccc 127513  T

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Target: scaffold2071 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 614
Target Start/End: Complemental strand, 797 - 717
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    |||||| || |||||||||| |||| |||||   ||||| ||||||||||| |||| | ||||||||||  ||||||||||    
T  797 cttaataggtcatttggtcctctaattaatttccagttttcattttggtcccataactaataaaactcatgttttggtccc 717  T

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Target: scaffold1251 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 614
Target Start/End: Complemental strand, 1201 - 1121
Alignment:
Q  534 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 614  Q
    |||||| || |||||||||||  ||||||||   ||||| ||||||||||| |||| | ||||||||||  ||||||||||    
T  1201 cttaataggtcatttggtccctcaaataatttccagttttcattttggtcccataagtaataaaactcatgttttggtccc 1121  T

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