View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21038_high_4 (Length: 541)
Name: NF21038_high_4
Description: NF21038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21038_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 17 - 526
Target Start/End: Complemental strand, 5484698 - 5484188
Alignment:
| Q |
17 |
atgaacggaaaatacctctataaaaatacataccttaaattgagtcttccttttatagaagaacgtgggatacttatatttgcttttatatttcaatgtg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5484698 |
atgaacggaaaatacctctataaaaatacataccttaaattgagtcttccttttatagaagaacgtgggatacttatatttgcttttatatttcaatgtg |
5484599 |
T |
|
| Q |
117 |
ggattcttattcttattttatttcaatggtacgttaaagaaaatgtggcaaatctacatggactccacatgacatcactgcacatctccagagctaaatt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5484598 |
ggattcttattcttattttatttcaatggtacgttaaagaaaatgtggcaaatctacatggactccacatgacatcactgcacatctccagagctaaatt |
5484499 |
T |
|
| Q |
217 |
gacaattgttttgtttagtaaaagtcgaagaactctcttttcccaaatcttaaagccaaggtagattctatgctttaccatacaaaactataacatgcag |
316 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5484498 |
gacaattgttttgttcagtaaaagtcgaagaactctcttttcccaaatcttaaagccaaggtaaattctatgctttaccatacaaaactataacatgcag |
5484399 |
T |
|
| Q |
317 |
cagtttcatcctggagatgtggcattgttgttgagtacacatggattggattggcacattttcaatgaacatgttgtatcatgttgtctcacgggtaagc |
416 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5484398 |
cagtttcatcctggagacgtggcattgttgttgagtacacatggattggattggcacattttcaatgaacatgttgtatcatgttgtctcacgggtaagc |
5484299 |
T |
|
| Q |
417 |
ttacataaggactattttgattgacatgtacaatttcagggtggaaattgctacttggacaaagttaggaatgaattcaactgatg-tttacaatttcag |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5484298 |
ttacataaggactattttgattgacatgtacaatttcagggtggaaattgctacttggacaaagttaggaatgaattcaactgatgttttacaatttcag |
5484199 |
T |
|
| Q |
516 |
agacaaaattg |
526 |
Q |
| |
|
||||||||||| |
|
|
| T |
5484198 |
agacaaaattg |
5484188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University