View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21038_high_7 (Length: 428)
Name: NF21038_high_7
Description: NF21038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21038_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 13 - 411
Target Start/End: Original strand, 36824732 - 36825133
Alignment:
| Q |
13 |
aatattcactccaaaagaattaagatactccactctcaggagtaaccaacc-aaatggtcaaataagcaacaaaagttgaaccatcaagcgaaatcacaa |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||| ||||||||| |
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| T |
36824732 |
aatattcactccaaaagaattaagatactccactctcaggagtaaccaacccaaatggtcaaataaacaacaaaaattgaaccatcaagcaaaatcacaa |
36824831 |
T |
|
| Q |
112 |
ctcaagattttaccacttgaaggaaacaacaatccaatgtttaaccgccatagggcaaaatctaacatcaacatagccaattaaggcacaaagctttaac |
211 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36824832 |
ctcaaggttttaccacttgaaggaaacaacaatccaatgtttaaccgccataaggcaaaatctaacatcaacatagccaattaaggcacaaagctttaac |
36824931 |
T |
|
| Q |
212 |
catctagcaaacatgtttagccaccataaggtagaaactc--atgaagtgaacaagttggttataaataaatccaccttctaccttatatactagctagc |
309 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
36824932 |
catctagcaaacatgtttagccaccatagggtagaaactcaaatgaagtgaacaagttggttatacataaatcaaccttctaccttatatactagctagc |
36825031 |
T |
|
| Q |
310 |
taaaatcggtatgactacccatatttcaacattactacctctagataaaattttacaattaaagtttaaactatggcatgaatgatgacatcaagctgta |
409 |
Q |
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||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36825032 |
taaaatcggtatgactacctatatttcaacatcactagctctagataaaattttacaattaaagtttaaactatggcatgaatgatcacatcaagctgta |
36825131 |
T |
|
| Q |
410 |
ct |
411 |
Q |
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|| |
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|
| T |
36825132 |
ct |
36825133 |
T |
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