View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21038_high_8 (Length: 398)
Name: NF21038_high_8
Description: NF21038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21038_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 365
Target Start/End: Original strand, 8106820 - 8107163
Alignment:
| Q |
16 |
attagaataaaggttggggaagatgtgcaaatcaacaatgagaaatagacatctaattaaataggcnnnnnnnttatacattgattaacaaatgagtgtc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
8106820 |
attagaataaaggttggggaagatgtgcaaatcaacaatgagaaatagacatctaattaaataggcaaaaaaattatacattgattaacaaatgagtgtc |
8106919 |
T |
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| Q |
116 |
atgatctattttgattggttgttgtaaaatatatagatgagtcataatcaattttgattggatgataaagaaatattaaatgaatttgaaacnnnnnnnn |
215 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8106920 |
atgatctattttgattggttgttgtaaa----atagatgagtcataatcaattttgattggatgataaagaaacattaaatgaatttgaaactttttttt |
8107015 |
T |
|
| Q |
216 |
nngttgtaaaaattatatannnnnnnatgcaaacatttgttgtatatagtgtgcggcagctgctcatctcttttaacatcctcttcaact-nnnnnnnnt |
314 |
Q |
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||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||| | |
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| T |
8107016 |
ttgttgtaaaaattatacatttttttatgcaaacat---ttgtatatagtgtgcggcagctgctcatctcttttaacattcccttcaactaaaaaaaaat |
8107112 |
T |
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| Q |
315 |
gaagctgcttagtactgttgttttgatgatgatctttctggcatctgctta |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8107113 |
gaagctgcttagtactgttgttttgatgatgatctttctggcatctgctta |
8107163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 96 - 365
Target Start/End: Original strand, 8111546 - 8111808
Alignment:
| Q |
96 |
ttgattaacaaatgagtgtcatgatctattttgattggttgttgtaaaatatatagatgagtcataatcaattttgattggatgataaagaaatattaaa |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8111546 |
ttgattaacaaatgagtgtcatgatctattttgattggttgttgtaaaata----gatgagtcataatcaattttgattggatgataaagaaacattaaa |
8111641 |
T |
|
| Q |
196 |
tgaatttgaaacnnnnnnnnnngttgtaaaaattatatannnnnnnatgcaaacatttgttgtatatagtgtgcggcagctgctcatctcttttaacatc |
295 |
Q |
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|||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8111642 |
tgaatttgaaac-tttttttttgttgtaaaaattatacttttttttatgcaaacat---ttgtatatagtgtgcggcagctgctcatctcttttaacatt |
8111737 |
T |
|
| Q |
296 |
ctcttcaact-nnnnnnnntgaagctgcttagtactgttgttttgatgatgatctttctggcatctgctta |
365 |
Q |
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| T |
8111738 |
cccttcaactaaaaaaaaatgaagctgcttagtactgttgttttgatgatgatctttctggcatctgctta |
8111808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 95 - 199
Target Start/End: Original strand, 772590 - 772690
Alignment:
| Q |
95 |
attgattaacaaatgagtgtcatgatctatttt--gattggttgttgtaaaatatatagatgagtcataatcaattttgattggatgataaagaaatatt |
192 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||| |||||| ||||||||||||| |||||||||| |||||||||||| ||| |
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| T |
772590 |
attgattaacaaatgagt--catgatctattttttgattggttgttgaaaaata----gatgagtcataattcattttgattgaatgataaagaaacatt |
772683 |
T |
|
| Q |
193 |
aaatgaa |
199 |
Q |
| |
|
||||||| |
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|
| T |
772684 |
aaatgaa |
772690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 25113457 - 25113515
Alignment:
| Q |
140 |
taaaatatatagatgagtcataatcaattttgattggatgataaagaaatattaaatga |
198 |
Q |
| |
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||||||||||| |||||||||||| ||||| ||||||||||||| ||| ||||||||| |
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| T |
25113457 |
taaaatatataagtgagtcataatctattttaattggatgataaaaaaacattaaatga |
25113515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 10894588 - 10894546
Alignment:
| Q |
156 |
gtcataatcaattttgattggatgataaagaaatattaaatga |
198 |
Q |
| |
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|||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
10894588 |
gtcataatcaattttgattggatgataagaaaacattaaatga |
10894546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 38050247 - 38050289
Alignment:
| Q |
156 |
gtcataatcaattttgattggatgataaagaaatattaaatga |
198 |
Q |
| |
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||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
38050247 |
gtcataatccattttgattggatgataagaaaatattaaatga |
38050289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 772509 - 772562
Alignment:
| Q |
14 |
atattagaataaaggttggggaagatgtgcaaatcaacaatgagaaatagacat |
67 |
Q |
| |
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|||||| |||| || ||| |||||||||||||| ||||||||||||||| |||| |
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| T |
772509 |
atattataatagagcttgaggaagatgtgcaaagcaacaatgagaaataaacat |
772562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 204
Target Start/End: Original strand, 30890105 - 30890182
Alignment:
| Q |
124 |
ttttgattggttgttgtaaaatatatagatgagtcataatcaattttgattggatgat-aaagaaatattaaatgaatttga |
204 |
Q |
| |
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|||| ||||||||||| ||||||||| ||||||| ||| |||||||||||||||| ||| ||| ||||||||||||||| |
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| T |
30890105 |
tttttattggttgttgaaaaatatat----gagtcatgatctattttgattggatgataaaaaaaacattaaatgaatttga |
30890182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 501141 - 501099
Alignment:
| Q |
156 |
gtcataatcaattttgattggatgataaagaaatattaaatga |
198 |
Q |
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|||||||||||||||||||||||||||| || |||||||||| |
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| T |
501141 |
gtcataatcaattttgattggatgataagaaagtattaaatga |
501099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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