View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21038_low_10 (Length: 351)
Name: NF21038_low_10
Description: NF21038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21038_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 7e-68; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 181 - 335
Target Start/End: Complemental strand, 29883967 - 29883813
Alignment:
| Q |
181 |
caactcttgtaagactctgaattaaaatcaattcggttatcaggaagcaccctcaacaaagcacaagaataatattgatcgtctggcctcttaggacttg |
280 |
Q |
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| T |
29883967 |
caactcttgtaagactctgaattaaaatcaattcggttatcaggaagcaccctcgacaaagcacaagaatgctattgatcgtctgacctcttaggacttg |
29883868 |
T |
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| Q |
281 |
cgaaggaaggaaaaaagtctgcagaaagtggagacggaggaccagagcttgaaat |
335 |
Q |
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| T |
29883867 |
cgaaggaaggaaaaaagcctgcagaaagtggagacggaggaccagagcatgaaat |
29883813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 181 - 335
Target Start/End: Original strand, 29879891 - 29880045
Alignment:
| Q |
181 |
caactcttgtaagactctgaattaaaatcaattcggttatcaggaagcaccctcaacaaagcacaagaataatattgatcgtctggcctcttaggacttg |
280 |
Q |
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| T |
29879891 |
caactcttgtaagactctgaattaaaatcaactcggttataagggagcacactcaacaaaacacgagaaggctattgattgtctggccctttaggacttg |
29879990 |
T |
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| Q |
281 |
cgaaggaaggaaaaaagtctgcagaaagtggagacggaggaccagagcttgaaat |
335 |
Q |
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| T |
29879991 |
caaaggaaggaaaaatgcctgcagaaagtggagacggaggaccagagcttgaaat |
29880045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 29884171 - 29884100
Alignment:
| Q |
11 |
gatgaaataggaatctaagtattgaagaagtacataatgtcttacattgaaaaatcattaaccaaataagat |
82 |
Q |
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| T |
29884171 |
gatgaaataggaatctaagtattgaagaagtacataatgtcttacattgaaaaatcattaaccaaataagat |
29884100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 29884081 - 29884032
Alignment:
| Q |
67 |
attaaccaaataagatctatacttaaaaatatatgacatgtatagtaaag |
116 |
Q |
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| T |
29884081 |
attaaccaaataagatctatacttaaaaatatatgacatgtatagtaaag |
29884032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 17646242 - 17646156
Alignment:
| Q |
14 |
gaaataggaatctaagtattgaagaagtacataatgtcttacattgaaaaatcattaaccaaataagatctatacttaaaaatatat |
100 |
Q |
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| T |
17646242 |
gaaaaaggaatataaatgttgaagaagtccataatatcttttattgaaaaatcacttgccaaataagatcaatatttaaaaatatat |
17646156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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