View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21038_low_11 (Length: 309)
Name: NF21038_low_11
Description: NF21038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21038_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 45 - 272
Target Start/End: Complemental strand, 38058000 - 38057772
Alignment:
| Q |
45 |
ttattattgcctaaacagtattgaaaatttaatcccctaaaaaacagtactgaggattgaataattattaactgaatttttaagagtttaaagtatatag |
144 |
Q |
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| T |
38058000 |
ttattattgcctaaacagtattgaaaatttaatcccgtaaaaaacagcactgaggattgaataattattaactgaatttttaagagtttaaagtatatag |
38057901 |
T |
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| Q |
145 |
attaaa-tagtacaaatattttatattatcgaacaaaaagtcatttcggatattttaagaaaattacacgcgaggactttggagaaaattagtttcaatg |
243 |
Q |
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| T |
38057900 |
attaaaatagtacaaatattttatattatcgaacaaaaagtcatttcggatattttaagaaaattacacgcgaggactgtggagaaaattagtttcaatg |
38057801 |
T |
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| Q |
244 |
gtgaaagatctcactttactaacgtgtaa |
272 |
Q |
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| T |
38057800 |
gtgaaagatctcactttactaacgtgtaa |
38057772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 37511131 - 37511080
Alignment:
| Q |
2 |
tgtaccaatacattcaaattggtgggtgta-catcgaatttgccttattatt |
52 |
Q |
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| T |
37511131 |
tgtaccaatacactcaaattgttgggtgtaccatcgaatttgccttattatt |
37511080 |
T |
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