View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21038_low_13 (Length: 270)
Name: NF21038_low_13
Description: NF21038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21038_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 48643832 - 48643593
Alignment:
| Q |
12 |
atgaataacattagcaaaaccagctcataagcatattagtttattaaatccaactacaaatagaatctaacaagagggagaaaagaataatggatctnnn |
111 |
Q |
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| T |
48643832 |
atgaataacattagcaaaaccagctcataagcatattagtttattaaatccaactacaaatagaatctaacaagagggagaaaagaataatggatctaaa |
48643733 |
T |
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| Q |
112 |
nnnntaaatgaacttaatctatatatctgcaagcaaagcaatgccttgtatatggtatgaaaaagaagacattaatatatacaaagagttttccttaagt |
211 |
Q |
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| T |
48643732 |
aaaataaatgaacttaatctatatatctgcaagcaaagcaatgccttgtatatggtatgaaaaagaagacattaatatatacaaagagttttccttaagt |
48643633 |
T |
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| Q |
212 |
gatcattatagagtatatatagacaagacaaccagcacaa |
251 |
Q |
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| T |
48643632 |
gatcattatagagtaaatatagacaagacaaccagcacaa |
48643593 |
T |
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