View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21038_low_17 (Length: 258)
Name: NF21038_low_17
Description: NF21038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21038_low_17 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 258
Target Start/End: Complemental strand, 44628392 - 44628155
Alignment:
| Q |
17 |
agctttaactagaaagtgactatttatcagcattacgctttcagcatttagcaatttgacgataaacactaacaccatcaaagcatactgattcaatcta |
116 |
Q |
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| T |
44628392 |
agctttaactagaaagtgactatttatcagcattacgctttcagcatttagcaatttgacgataaacactaacaccattaaagcatactgattcaatcta |
44628293 |
T |
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| Q |
117 |
aatacatgtgtagtgatcaaacatttcttgttccactgcatttgattccataacatgtccaatctaaaagaata-aaaacaattaccaaagtcttcaata |
215 |
Q |
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| T |
44628292 |
aatacatgtgtagtgatcaaaggtttcttgttccactgcatttgattccataacatgtccaatctaaaagaataaaaaacaattaccaaagtcttcaata |
44628193 |
T |
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| Q |
216 |
tgatcttgtcaaggtcagatcagagcaccatcataactcgatc |
258 |
Q |
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| T |
44628192 |
tgatcttgtcaagg-----tcagagcaccatcataactcgatc |
44628155 |
T |
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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 195
Target Start/End: Original strand, 42388496 - 42388592
Alignment:
| Q |
100 |
catactgattcaatctaaatacatgtgtagtgatcaaa--catttcttgttccactgcatttgattccataacatgtccaatctaaaagaataaaaac |
195 |
Q |
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| T |
42388496 |
cataccgattcaatctaaa-acaagtgtagttatcacaagcatgtttcgttccactgcatttgattccttaacatgtccaatctaaaagaagaaaaac |
42388592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 100 - 195
Target Start/End: Original strand, 34597432 - 34597529
Alignment:
| Q |
100 |
catactgattcaatctaaatacatgtgtagtgatcaaa--catttcttgttccactgcatttgattccataacatgtccaatctaaaagaataaaaac |
195 |
Q |
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| T |
34597432 |
cataccgattcaatctaaaaacaagtgtagttatcacaagcatgttttgttccactgcatttgattccttaacatgtccaatctaaaagaagaaaaac |
34597529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 106 - 206
Target Start/End: Complemental strand, 26081640 - 26081537
Alignment:
| Q |
106 |
gattcaatctaaatacatgtgtagtgatcaaa--catttcttgttccactgcatttgattccataacatgtccaatctaaaagaataaaaa-caattacc |
202 |
Q |
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||||||||||||| ||| || ||||||||| | ||||| |||||||| || |||||||||| ||||||||||||||||||||| ||||| |||||||| |
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| T |
26081640 |
gattcaatctaaaaacaagtttagtgatcacaagcattttttgttccaatggatttgattccttaacatgtccaatctaaaagacgaaaaaccaattacc |
26081541 |
T |
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| Q |
203 |
aaag |
206 |
Q |
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|||| |
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| T |
26081540 |
aaag |
26081537 |
T |
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