View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21038_low_9 (Length: 392)
Name: NF21038_low_9
Description: NF21038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21038_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 63 - 387
Target Start/End: Original strand, 1179812 - 1180138
Alignment:
| Q |
63 |
taattttattaaagtaacaaaatttattaannnnnnnatatgtaaataatcttgaagcaaaaagtaaaaagaaaagtatagagtaacaagtaatcacttg |
162 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1179812 |
taattttatcaaagtaacaaaatttattaatttttt-atatgtaaataatcttgaagcaaaaagtaaaaagaaaagtatagagtaacaagtaatcacttg |
1179910 |
T |
|
| Q |
163 |
accnnnnnnnncaagtaatcaatttcaaaactatcacttgattaaatatacttaatatgtcatatat--ggatacctttgagacgcttaaatttggtttt |
260 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || |||||||||||||||||||| |
|
|
| T |
1179911 |
accaaaaaaaacaagtaatcaatttcaaaactatcacttgattaaatatacttaatatgtcatatatatgcatacccttaagacgcttaaatttggtttt |
1180010 |
T |
|
| Q |
261 |
gcattgaggacaaacttgatttccctcccttctttcatattcataacaatttctacaaactggaaatgcacattcattgcaagccacaaagggatcacca |
360 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1180011 |
gcattgaggacaaacttggtttccctcccttctttcatattcataacaatttctacaaacaggaaatgcacattcattgcaagccacaaaggggtcacca |
1180110 |
T |
|
| Q |
361 |
tctgcattaacccctatg-cttctccac |
387 |
Q |
| |
|
|||||||||||||||||| ||||||||| |
|
|
| T |
1180111 |
tctgcattaacccctatgtcttctccac |
1180138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 350
Target Start/End: Original strand, 44379112 - 44379211
Alignment:
| Q |
251 |
atttggttttgcattgaggacaaacttgatttccctcccttctttcatattcataacaatttctacaaactggaaatgcacattcattgcaagccacaaa |
350 |
Q |
| |
|
|||| |||||||| ||||||||| |||| || || || | ||||||||| ||||| ||| |||||| || || |||||||||||||||||||| ||||| |
|
|
| T |
44379112 |
atttagttttgcagtgaggacaagcttggttcccttctcgtctttcatactcatagcaaggtctacacacagggaatgcacattcattgcaagcaacaaa |
44379211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 54385220 - 54385292
Alignment:
| Q |
233 |
tacctttgagacgcttaaatttggttttgcattgaggacaaacttgatttccctcccttctttcatattcata |
305 |
Q |
| |
|
|||||||||||||||| || |||| ||||| |||||||||| ||| | ||||||||||||||||| ||||| |
|
|
| T |
54385220 |
tacctttgagacgcttgtatctggtcttgcactgaggacaaagttgtctcccctcccttctttcatactcata |
54385292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University