View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21039_high_2 (Length: 226)

Name: NF21039_high_2
Description: NF21039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21039_high_2
NF21039_high_2
[»] chr7 (2 HSPs)
chr7 (7-226)||(24907329-24907548)
chr7 (44-186)||(2212658-2212799)
[»] chr5 (2 HSPs)
chr5 (43-163)||(11026769-11026889)
chr5 (42-195)||(24403656-24403809)
[»] chr4 (2 HSPs)
chr4 (45-149)||(40350454-40350558)
chr4 (41-177)||(6217640-6217776)
[»] chr3 (1 HSPs)
chr3 (44-128)||(14988302-14988387)
[»] chr8 (2 HSPs)
chr8 (45-114)||(7561317-7561386)
chr8 (41-128)||(12768583-12768670)
[»] chr1 (1 HSPs)
chr1 (42-149)||(35154572-35154681)


Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 24907548 - 24907329
Alignment:
Q  7 ccaaacccatgtttcaaagagctaacagttaaaggacctgtttggtttggcggcgggaaagctaaacccacgtttcaaagagcaactttcgtaaaaattg 106  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24907548 ccaaacccatgtttcaaagagctaacagtgaaaggacctgtttggtttggcggcgggaaagctaaacccacgtttcaaagagcaactttcgtaaaaattg 24907449  T
Q  107 aaaagcttgctttcctagctttcacgacaatgtgatttcttgctactgttttgaaaattacaatgccattcgagacatactaaaagatgcagtaacaaat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||    
T  24907448 aaaagcttgctttcctagctttcacgacaatgtgatttcttgcaactgttttgaaaattacaacgccattcgagacatactaaaagatgcagtaacacat 24907349  T
Q  207 tataataaattattacttat 226  Q
    ||||||||||||||||||||    
T  24907348 tataataaattattacttat 24907329  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 44 - 186
Target Start/End: Original strand, 2212658 - 2212799
Alignment:
Q  44 ctgtttggtttggcggcgggaaagctaaacccacgtttcaaagagcaactttcgtaaaaattgaaaagcttgctttcctagctttcacgacaatgtgatt 143  Q
    |||||||||||||||| |||||||| |||||||||| || ||| |||||||||||  ||||||| ||||| |||||||||||||||||| |||  |||||    
T  2212658 ctgtttggtttggcggtgggaaagccaaacccacgtctcgaagggcaactttcgtggaaattgagaagctagctttcctagctttcacggcaacatgatt 2212757  T
Q  144 tcttgctactgttttgaaaattacaatgccattcgagacatac 186  Q
    |||||| ||  ||||||||| ||||| ||||||| | ||||||    
T  2212758 tcttgccacaattttgaaaa-tacaacgccattctaaacatac 2212799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 43 - 163
Target Start/End: Complemental strand, 11026889 - 11026769
Alignment:
Q  43 cctgtttggtttggcggcgggaaagctaaacccacgtttcaaagagcaactttcgtaaaaattgaaaagcttgctttcctagctttcacgacaatgtgat 142  Q
    ||||||||||||||| | |||||||| |||||||||||||||||||| ||||||||  ||||||| |||||| ||||||||||||||||||||| |||||    
T  11026889 cctgtttggtttggcagtgggaaagccaaacccacgtttcaaagagcgactttcgtggaaattgagaagctttctttcctagctttcacgacaacgtgat 11026790  T
Q  143 ttcttgctactgttttgaaaa 163  Q
    |||||||  | ||||||||||    
T  11026789 ttcttgccgcagttttgaaaa 11026769  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 42 - 195
Target Start/End: Original strand, 24403656 - 24403809
Alignment:
Q  42 acctgtttggtttggcggcgggaaagctaaacccacgtttcaaagagcaactttcgtaaaaattgaaaagcttgctttcctagctttcacgacaatgtga 141  Q
    |||||||||||||| ||| |||||||| |||||||| |||||||||||||||||| || ||||  |  | |||||||||||| |||||||||||| ||||    
T  24403656 acctgtttggtttgacggtgggaaagccaaacccacatttcaaagagcaactttcctagaaatgaagtaacttgctttcctaactttcacgacaacgtga 24403755  T
Q  142 tttcttgctactgttttgaaaattacaatgccattcgagacatactaaaagatg 195  Q
    ||| ||||  | |||||||||| || |||| ||||| | ||||||  |||||||    
T  24403756 ttttttgccgcagttttgaaaaatataatgtcattccaaacatacgtaaagatg 24403809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 45 - 149
Target Start/End: Complemental strand, 40350558 - 40350454
Alignment:
Q  45 tgtttggtttggcggcgggaaagctaaacccacgtttcaaagagcaactttcgtaaaaattgaaaagcttgctttcctagctttcacgacaatgtgattt 144  Q
    ||||||||||||| | |||||||| |||||||||||||||||||||| |||| || |||| || ||||| ||||||||| |||||||||||| |||||||    
T  40350558 tgtttggtttggcagtgggaaagccaaacccacgtttcaaagagcaattttcatagaaatggagaagctcgctttcctaactttcacgacaacgtgattt 40350459  T
Q  145 cttgc 149  Q
     ||||    
T  40350458 tttgc 40350454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 177
Target Start/End: Complemental strand, 6217776 - 6217640
Alignment:
Q  41 gacctgtttggtttggcggcgggaaagctaaacccacgtttcaaagagcaactttcgtaaaaattgaaaagcttgctttcctagctttcacgacaatgtg 140  Q
    ||||| ||||||||||||| || ||||| ||||   ||| | |||||||||||||||| |||||  | ||||||  ||||||||||||||||  || |||    
T  6217776 gacctctttggtttggcggtggaaaagccaaactatcgtcttaaagagcaactttcgtgaaaatgaagaagcttagtttcctagctttcacggtaacgtg 6217677  T
Q  141 atttcttgctactgttttgaaaattacaatgccattc 177  Q
     ||||||||  | |||||||||| |||||||| ||||    
T  6217676 gtttcttgccgcagttttgaaaaatacaatgctattc 6217640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 14988387 - 14988302
Alignment:
Q  44 ctgtttggttt-ggcggcgggaaagctaaacccacgtttcaaagagcaactttcgtaaaaattgaaaagcttgctttcctagcttt 128  Q
    ||||||||||| ||||| |||||||| ||||||||||||||| |||| |||||||| |||||  |||||||| |||||||||||||    
T  14988387 ctgtttggttttggcggtgggaaagccaaacccacgtttcaaggagctactttcgtgaaaatctaaaagcttactttcctagcttt 14988302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 114
Target Start/End: Complemental strand, 7561386 - 7561317
Alignment:
Q  45 tgtttggtttggcggcgggaaagctaaacccacgtttcaaagagcaactttcgtaaaaattgaaaagctt 114  Q
    ||||||||||| | ||||||||||||||| ||||| | ||||||| |||||||| ||||| |||||||||    
T  7561386 tgtttggtttgaccgcgggaaagctaaactcacgtctaaaagagctactttcgtgaaaatagaaaagctt 7561317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 128
Target Start/End: Original strand, 12768583 - 12768670
Alignment:
Q  41 gacctgtttggtttggcggcgggaaagctaaacccacgtttcaaagagcaactttcgtaaaaattgaaaagcttgctttcctagcttt 128  Q
    ||||||||||||||||||||||||||||  ||| |  | || || |||||||||||||  || | || ||||||||||||||||||||    
T  12768583 gacctgtttggtttggcggcgggaaagccgaactcgtggtttaaggagcaactttcgtggaagtagagaagcttgctttcctagcttt 12768670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 149
Target Start/End: Complemental strand, 35154681 - 35154572
Alignment:
Q  42 acctgtttggtttggcggcgggaaagctaaacccacgtttcaaagagcaactttcgtaaaaattgaaaagctt--gctttcctagctttcacgacaatgt 139  Q
    ||||||||||||||||   || ||||| ||||  |||||||||||||||| ||||||  |||| || | ||||  |||||||||||||||||| |||  |    
T  35154681 acctgtttggtttggcaatggaaaagccaaacatacgtttcaaagagcaaatttcgtggaaatggagatgcttttgctttcctagctttcacggcaacat 35154582  T
Q  140 gatttcttgc 149  Q
    ||||||||||    
T  35154581 gatttcttgc 35154572  T

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