View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2103_high_12 (Length: 236)
Name: NF2103_high_12
Description: NF2103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2103_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 35 - 223
Target Start/End: Original strand, 45496316 - 45496506
Alignment:
| Q |
35 |
ccaagcaatgttgcctctggtttagtagtgttaaatgttgagggatgctcgatattgtgtatctagtataggttgattggtttgggaaggtttctcaagg |
134 |
Q |
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| T |
45496316 |
ccaagcaatgttgcctctggtttagcagtgttaaatgttgagggatgctcaatattgtgtatctagtataggttgattggtttgggaaggtttctcaagg |
45496415 |
T |
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| Q |
135 |
gattgttgtgttggttcattctagtaatctccccaagtttctccttgttaccacttgtaaccaagaaaaac--acattttccaactctttg |
223 |
Q |
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| T |
45496416 |
gtttgttgtgttggttcattctagtaatctccccaagtttctcattgttaccacttgtaaccaagaaaaacgtacattttccaactctttg |
45496506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 45496273 - 45496305
Alignment:
| Q |
5 |
ctagatggtttgcatcccaattcacatgtccca |
37 |
Q |
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| T |
45496273 |
ctagatggtttgcatcccaattcacatgtccca |
45496305 |
T |
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