View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2103_high_7 (Length: 315)

Name: NF2103_high_7
Description: NF2103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2103_high_7
NF2103_high_7
[»] chr3 (6 HSPs)
chr3 (47-215)||(34705436-34705604)
chr3 (216-301)||(18319605-18319690)
chr3 (212-301)||(46920103-46920192)
chr3 (214-301)||(11031731-11031818)
chr3 (214-297)||(52126396-52126479)
chr3 (10-56)||(34704856-34704902)
[»] chr8 (2 HSPs)
chr8 (217-301)||(11465584-11465668)
chr8 (216-301)||(3428480-3428565)
[»] chr7 (2 HSPs)
chr7 (214-301)||(16850049-16850136)
chr7 (218-301)||(31738943-31739026)
[»] chr4 (6 HSPs)
chr4 (212-301)||(54207233-54207322)
chr4 (214-301)||(34967090-34967177)
chr4 (215-301)||(9117443-9117529)
chr4 (216-301)||(27742843-27742928)
chr4 (16-92)||(18978098-18978174)
chr4 (238-295)||(25476960-25477017)
[»] chr1 (2 HSPs)
chr1 (212-301)||(38006996-38007085)
chr1 (214-301)||(51083358-51083445)


Alignment Details
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 47 - 215
Target Start/End: Original strand, 34705436 - 34705604
Alignment:
Q  47 aatgcaactacaatagatttttggtggtaaatgatgtcaaaccaaagaaagccaaaacttaattacagattaagcactacaatgttcgtatattacaatc 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34705436 aatgcaactacaatagatttttggtggtaaatgatgtcaaaccaaagaaagccaaaacttaattacagattaagcactacaatgttcgtatattacaatc 34705535  T
Q  147 agaaaccgtagagtaaatgacaattacacaaagatcattcaagcgtcaaaataaaccataaaacataag 215  Q
    ||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  34705536 agaaaccttagagtaaatgacaattacacaaggatcattcaagtgtcaaaataaaccataaaacataag 34705604  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 18319605 - 18319690
Alignment:
Q  216 ggggtgtttgttttcaggttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaag 301  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18319605 ggggtgtttgtttccaggttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaag 18319690  T

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Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 212 - 301
Target Start/End: Original strand, 46920103 - 46920192
Alignment:
Q  212 taagggggtgtttgttttcaggttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaag 301  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46920103 taagggggtgtttgtttccatgttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaag 46920192  T

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Target: chr3; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 214 - 301
Target Start/End: Complemental strand, 11031818 - 11031731
Alignment:
Q  214 agggggtgtttgttttcaggttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaag 301  Q
    ||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11031818 agggggtgtttgtttccaggttataaaatttatttctaggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaag 11031731  T

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Target: chr3; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 214 - 297
Target Start/End: Complemental strand, 52126479 - 52126396
Alignment:
Q  214 agggggtgtttgttttcaggttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggta 297  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  52126479 agggggtgtttgtttccaggttataaaatttattccttggaatatgaggatgggaatgcactttcccatgtttggtagaaggta 52126396  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 34704856 - 34704902
Alignment:
Q  10 gcacagagtaaaaacaataaaaatttattaaaataacaatgcaacta 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  34704856 gcacagagtaaaaacaataaaaatttattaaaataacaatgcaacta 34704902  T

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Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 217 - 301
Target Start/End: Original strand, 11465584 - 11465668
Alignment:
Q  217 gggtgtttgttttcaggttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaag 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11465584 gggtgtttgttttcaggttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaag 11465668  T

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Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 3428480 - 3428565
Alignment:
Q  216 ggggtgtttgttttcaggttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaag 301  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3428480 ggggtgtttgtttccaggttataaaatttattcctggaaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaag 3428565  T

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Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 214 - 301
Target Start/End: Complemental strand, 16850136 - 16850049
Alignment:
Q  214 agggggtgtttgttttcaggttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaag 301  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16850136 agggggtgtttgtttccaggttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaag 16850049  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 218 - 301
Target Start/End: Complemental strand, 31739026 - 31738943
Alignment:
Q  218 ggtgtttgttttcaggttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaag 301  Q
    ||||||||||| |||||||||||||||||| ||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31739026 ggtgtttgtttccaggttataaaatttatttcttaaaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaag 31738943  T

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Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 212 - 301
Target Start/End: Original strand, 54207233 - 54207322
Alignment:
Q  212 taagggggtgtttgttttcaggttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaag 301  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54207233 taagggggtgtttgtttccaggttataaaatttattcctaggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaag 54207322  T

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Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 214 - 301
Target Start/End: Original strand, 34967090 - 34967177
Alignment:
Q  214 agggggtgtttgttttcaggttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaag 301  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34967090 agggggtgtttgtttccaggttataaaatttattcctgggaatatgaggatgggaatgcactttctcatgtttggtagaaggtaaaag 34967177  T

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Target: chr4; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 215 - 301
Target Start/End: Original strand, 9117443 - 9117529
Alignment:
Q  215 gggggtgtttgttttcaggttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaag 301  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9117443 gggggtgtttgtttccaggttataaaatttattcctaggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaag 9117529  T

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Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 27742928 - 27742843
Alignment:
Q  216 ggggtgtttgttttcaggttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaag 301  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27742928 ggggtgtttgtttccaggttataaaatttattcttgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaag 27742843  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 18978174 - 18978098
Alignment:
Q  16 agtaaaaacaataaaaatttattaaaataacaatgcaactacaatagatttttggtggtaaatgatgtcaaaccaaa 92  Q
    |||||||| || |||| | |||||||| |||||||||| ||||| || ||||||||||||| || ||||||||||||    
T  18978174 agtaaaaataagaaaactctattaaaacaacaatgcaagtacaagaggtttttggtggtaagtggtgtcaaaccaaa 18978098  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 238 - 295
Target Start/End: Original strand, 25476960 - 25477017
Alignment:
Q  238 aaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaagg 295  Q
    ||||||||||| |||||||||| | || ||||| ||| ||||||||||||||||||||    
T  25476960 aaaatttattcatgggaatatgtgaataggaatacacattcccatgtttggtagaagg 25477017  T

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Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 212 - 301
Target Start/End: Original strand, 38006996 - 38007085
Alignment:
Q  212 taagggggtgtttgttttcaggttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaag 301  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38006996 taagggggtgtttgtttccaggttataaaatttattcctaggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaag 38007085  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 214 - 301
Target Start/End: Original strand, 51083358 - 51083445
Alignment:
Q  214 agggggtgtttgttttcaggttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaag 301  Q
    ||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51083358 agggggtgtttgtttccaagttataaaatttattccttggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaag 51083445  T

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