View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2103_high_9 (Length: 269)
Name: NF2103_high_9
Description: NF2103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2103_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 8 - 243
Target Start/End: Complemental strand, 34789167 - 34788932
Alignment:
| Q |
8 |
gagcagagatgttgcacagaaacatatatcttacattcaagtcatgcactatccactattctatctatcaaactgttgatacagtggtcaacagacctta |
107 |
Q |
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| T |
34789167 |
gagcagagatgttgcacagaaacatatatcttacattcaagtcatgcactatccactattctatctatcaaactgttgatacagtggtcaacagacctta |
34789068 |
T |
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| Q |
108 |
ataacatgcaatttctttagaaaattaattactaatatgtgtggaacgaagctctacagagacggcaactcggatgagcgctaagccacatatcaagcac |
207 |
Q |
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| T |
34789067 |
ataacatgcaatttctttagaaaattaattactaatatgtgtggaacgaagctctacagagacggcaactcggatgagcgctaagccacatatcaagcac |
34788968 |
T |
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| Q |
208 |
tcagaatgataaacattttgacgttctgttaacacc |
243 |
Q |
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| T |
34788967 |
tcagaatgataaacattttgacgttctgttaacacc |
34788932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 118 - 249
Target Start/End: Original strand, 2289977 - 2290111
Alignment:
| Q |
118 |
atttctttagaaaattaattactaatatgtgtggaacgaagctctacagagacggcaactcggatga---gcgctaagccacatatcaagcactcagaat |
214 |
Q |
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| T |
2289977 |
atttctttagaaaatttattactaacatgtgtggagcgaagttcaacagagagggcaactaggatgatgagcactaagccacatatcaagcactcagaat |
2290076 |
T |
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| Q |
215 |
gataaacattttgacgttctgttaacaccttcacc |
249 |
Q |
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| T |
2290077 |
gataaacatgctgacattctgttaacaccttcacc |
2290111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 2289873 - 2289952
Alignment:
| Q |
73 |
tatcaaactgttgatacagtggtcaacagaccttaataacatgc-aatttctttagaaaattaattactaatatgtgtgga |
152 |
Q |
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| T |
2289873 |
tatcaaactgttgataga-tggtcaacaaaacttgataatatgttaatttctttagaaaattaattactaacatgtgtgga |
2289952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 2289812 - 2289849
Alignment:
| Q |
51 |
atgcactatccactattctatctatcaaactgttgata |
88 |
Q |
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| T |
2289812 |
atgcactatccactattctatccatcaaactgttgata |
2289849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 199
Target Start/End: Original strand, 9564734 - 9564816
Alignment:
| Q |
117 |
aatttctttagaaaattaattactaatatgtgtggaacgaagctctacagagacggcaactcggatgagcgctaagccacata |
199 |
Q |
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||||||||||||||||| || ||||| |||| |||| ||||||||| |||| | ||||| |||||| | |||||||||||| |
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| T |
9564734 |
aatttctttagaaaatttatgactaacatgtatggagggaagctctatagagcagtcaactaggatgaacactaagccacata |
9564816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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