View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2103_low_15 (Length: 225)
Name: NF2103_low_15
Description: NF2103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2103_low_15 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 41933417 - 41933203
Alignment:
| Q |
1 |
tatttttgcataggccatgtttggataaacagtttaataaagcttaataaagcgtttatagcatcattgcttatcatataagtgcttaagtattagcaat |
100 |
Q |
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| T |
41933417 |
tatttttgcataggccatgtttggataaacagtttaataaagc----------gtttatagcatcatagcttatcatataagtgcttaagtattagcaat |
41933328 |
T |
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| Q |
101 |
attgaaaacaaaaaatactataacatcaaactgttatcatgagttatacgctgttttcatgtgccatccttgagaactaatagaaataatcagaaatcag |
200 |
Q |
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| T |
41933327 |
attgaaaacaaaaaatactataacatcaaactgttatcatgagttataagctgttttcatgtgccatccttgagaactaatagaaataatcagaaatcag |
41933228 |
T |
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| Q |
201 |
cttatagacatgtcattgtcatcat |
225 |
Q |
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| T |
41933227 |
cttatagacatgtcattgtcatcat |
41933203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 31875733 - 31875688
Alignment:
| Q |
43 |
cttaataaagcgtttatagcatcattgcttatcatataagtgctta |
88 |
Q |
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|||||| ||||||||||||||| | |||||||||||||||||||| |
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| T |
31875733 |
cttaatgaagcgtttatagcataagcgcttatcatataagtgctta |
31875688 |
T |
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