View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2103_low_2 (Length: 492)
Name: NF2103_low_2
Description: NF2103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2103_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 16 - 475
Target Start/End: Original strand, 40805555 - 40806016
Alignment:
| Q |
16 |
agatgaagggaagagaaaaagagttgaaatgcttgctgctagtgcttgcttgtgactactgaatagttgcaatcagtagtagtagttgcggaccacaaca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40805555 |
agatgaagggaagagaaaaagagttgaaatgcttgctgctagtgcttgcttgtgactactgaatagttgcaatcagtagtagtagttgcggaccacaaca |
40805654 |
T |
|
| Q |
116 |
tcctctaaagaacctttctgccacttcatactttatttatttattccattactacccttcattccttcaggatagtgtaccagaaaagcttaagagttct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40805655 |
tcctctaaagaacctttctgccacttcatactttatttatttattccattactacccttcattccttcaggatagtgtaccaaaaaagcttaagagttct |
40805754 |
T |
|
| Q |
216 |
tcaatgtctgtgacagtgaagctaattacagataaatgttttgtgaggaattaatta--atatatatagcctttctttggcgataaattaagtaacgttt |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40805755 |
tcaatgtctgtgacagtgaagctaattacagataaatgttttgtgaggaattaattaatatatatatagcctttctttggcgataaattaagtaacgttt |
40805854 |
T |
|
| Q |
314 |
aaattttttcaattaaaataattaagtaaaaagttggtattatatgctcaaagtagagtagtagtagcaatccaacctcactctaacttttagagaatat |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40805855 |
aaattttttcaattaaaataattaagtaaaaagttggtattataagctcaaagtagagtagtagtagcaatccaacctcactctaacttttagagaatat |
40805954 |
T |
|
| Q |
414 |
aaaacaaaaaatttatttgtattttaactatctatttaaccacgcttatattatcatgtttt |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
40805955 |
aaaacaaaaaatttatttgtattttaactatctatttaaccgcgcttatattatcatgtttt |
40806016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University