View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2103_low_3 (Length: 463)
Name: NF2103_low_3
Description: NF2103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2103_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 42446899 - 42447344
Alignment:
| Q |
1 |
ccaaaaacaaattacattgggattaaaatgctcatgataattatgcctcgccagaaatatgcatggatagatacaagatactttggtctctatcattatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42446899 |
ccaaaaacaaattacattgggattaaaatgctcatgataattatgcctcgccagaaatatgcatggatagatacaagatactttggtatctatcattatc |
42446998 |
T |
|
| Q |
101 |
agcaactttccagatagcccaatatacaagactgtttaatatatttgttagaccatcaattttaaagatgtttaaagtttaaacactgaagtttaattta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42446999 |
agcaactttccagatagcccaatatacaagactgtttaatatatttgttagaccatcaattttaaagatgtttaaagtttaaacactgaagtttaattta |
42447098 |
T |
|
| Q |
201 |
caatatcttcgttaataaagatttagcaaaatgtaaagatactgattagagtacaccaacactagaagtagaagagcatgtgaatcggggaacagaatca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42447099 |
caatatcttcgttaataaagatttagcaaaatgtaaagataatgattagagtacaccaacactagaagtagaagagcatgtgaatcggggaacagaatca |
42447198 |
T |
|
| Q |
301 |
gaatttactcaaagaacgtgtcatttccatatcttagaacttcaacaaataccgaaacactagtgtaacttaacctgtttannnnnnncgtcaagtaatt |
400 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42447199 |
gaatttactcaaagaacatgtcatttccatatcttagaacttcaacaaataccgaaacactagtgtaacttaacctgtttatttttttcgtcaagtaatt |
42447298 |
T |
|
| Q |
401 |
tacacggtgaataagtaaagaattcaggattttagcggaagttatt |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42447299 |
tacacggtgaataagtaaagaattcaggattttagcggaagttatt |
42447344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University