View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2103_low_5 (Length: 392)
Name: NF2103_low_5
Description: NF2103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2103_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 10 - 378
Target Start/End: Original strand, 43790896 - 43791264
Alignment:
| Q |
10 |
tattctatctggaaaatttccattggagttactcagctgttcctcaatacaacagttggatctttctggaaatagctttgaaagtgaaattccatctacc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43790896 |
tattctatctggaaaatttccattggagttactcagctgttcctcaatacaacagttggatctttctggaaatagctttgaaagtgaaattccatctacc |
43790995 |
T |
|
| Q |
110 |
atagacaagcttcagaacctcacagatcttgtactcaacaacaacacctttgttggatcactgcctcgtgaaattggaaatattagtactttggaaggtc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43790996 |
atagacaagcttcagaacctcacagatcttgtactcaacaacaacacctttgttggatcactgcctcgtgaaattggaaatattagtactttggaaggtc |
43791095 |
T |
|
| Q |
210 |
ttttcctttttggaaattctttaaaaggtgaaattccagtggagattggaaagctgaaaaatttgaacacaatttacctctatgataaccaaatgtctgg |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43791096 |
ttttcctttttggaaattctttaaaaggtgaaattccagtggagattggaaagctgaaaaatttgaacacaatttacctctatgataaccaaatgtctgg |
43791195 |
T |
|
| Q |
310 |
attcataccaagagagttaacaaactgcacaagtttaagagaaatcgatttctttggaaaccattttac |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43791196 |
attcataccaagagagttaacaaactgcacaagtttaagagaaatcgatttctttggaaaccattttac |
43791264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University