View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2104-Insertion-2 (Length: 531)
Name: NF2104-Insertion-2
Description: NF2104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2104-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 418; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 23 - 525
Target Start/End: Complemental strand, 8104882 - 8104396
Alignment:
| Q |
23 |
atatacaaatgccgagctaactaactaactaactcatccaccattgcacccattgctgttacctgcgtaggaagaatctcccttgtgtgtcctgtcctac |
122 |
Q |
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| T |
8104882 |
atatacaaatgccgagctaactaactaactaactcatccaccattgcacccattgctgttacctgcgtaggaagaatctcccttgtgtgtcctgtcctac |
8104783 |
T |
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| Q |
123 |
agataaacaacgctgaaaactacatacaaataacatgctaatctaaaagaaattattataacnnnnnnnnagaggaaaaaactttttgtgaaattaatat |
222 |
Q |
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| T |
8104782 |
agataaacaacgctgaaaactacattcaaataacatggtaatctaaaataaatta----------------gaggaaaaaactttttgtgaaattaatat |
8104699 |
T |
|
| Q |
223 |
tactatagcctctatataatatatttccagtctctcataaaattaatataactaacaataagcacaatcaaaattaaaccaaggaaactaagaacagttt |
322 |
Q |
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| T |
8104698 |
tactatagcctctatataatatatttccagtctctgataaaattaatataactaacaataagcacaatcaaaattaaaccaaggaaactaagaacagttt |
8104599 |
T |
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| Q |
323 |
tcaagttacaaaataagttaataaaatttattgtttataattctggagagaggaggaagagggagtattaattaattaaatcaatgaatacctctattta |
422 |
Q |
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| T |
8104598 |
tcaagttacaaaataagttaataaaatttattgtttataattctggagagaggaggaagagggagtattaattaattaaatcaatgaatacctctattta |
8104499 |
T |
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| Q |
423 |
tcatttactctatttgagtttttgaaacaagtttattatattctcattttcctttaactagcattttgtattaaagtcaagtcaaaatgtcaaatacaac |
522 |
Q |
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| T |
8104498 |
tcatttactctatttgacttttttaaagaagtttattatattctcattttcctttaactagcattttgtattaaagccaagtcaaaatgtcaaatacaac |
8104399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 314
Target Start/End: Original strand, 8100372 - 8100427
Alignment:
| Q |
261 |
aaaattaatataactaacaataagcacaatcaaaat--taaaccaaggaaactaag |
314 |
Q |
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| T |
8100372 |
aaaattaatataactaacaataagcacaatgaaaatcaaaaaccaaggaaaataag |
8100427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 8100500 - 8100540
Alignment:
| Q |
309 |
actaagaacagttttcaagttacaaaataagttaataaaat |
349 |
Q |
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| T |
8100500 |
actaagaatggttttcaagttacaaaataagttaataaaat |
8100540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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