View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2104-Insertion-5 (Length: 310)
Name: NF2104-Insertion-5
Description: NF2104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2104-Insertion-5 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 8 - 310
Target Start/End: Original strand, 27354513 - 27354809
Alignment:
| Q |
8 |
tgatccatgctcccagtcgtataccataaaaatctctcagagcctttaatcattagaaagnnnnnnn-cagcaccgtttactctctcaactaagacttca |
106 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| || ||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
27354513 |
tgatccatgctcccagtcgtattccataaaaatctctcagagctttccatccttagaaagaaaaaaaacagcaccgtttactctctcaactaagacttca |
27354612 |
T |
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| Q |
107 |
aactggttgtcttttgtttcaataaagtggcataacgggtaatctcatccccaaagtcagctgtaaagaggttagataacctcacaacaccctacagaaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
27354613 |
aactggttgtcttttgtttcaataaagtggcatagcgggtaatctcatccccaaagtcagctgtaaagaggttaggtaacctcacaacaccctacagaaa |
27354712 |
T |
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| Q |
207 |
gaaaagnnnnnnnnnnnnnncacaaataaacatcaaaacattcgtagcaacagtgaaacgcatgaactggatatgtaaaacgaaacattaacactgacat |
306 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27354713 |
aaaaa-------acataaaacacaaataaacatcaaaacatttgtagcaacagtgaaacacatgaactggatatgtaaaacgaaacattaacactgacat |
27354805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 8 - 310
Target Start/End: Original strand, 42995747 - 42996045
Alignment:
| Q |
8 |
tgatccatgctcccagtcgtataccataaaaatctctcagagcctttaatcattagaaagnnnnnnncagcaccgtttactctctcaactaagacttcaa |
107 |
Q |
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| T |
42995747 |
tgatccatgctcccagtcgtatgccataaaaatctctcagagccttccatccttagaaagaaaaaaacagcaccgtttactctctcaactaagacttcaa |
42995846 |
T |
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| Q |
108 |
actggttgtcttttgtttcaataaagtggcataacgggtaatctcatccccaaagtcagctgtaaagaggttagataacctcacaacaccctacag-aaa |
206 |
Q |
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||| |||||||||||| |||||||||||||||| |||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||| |
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| T |
42995847 |
actagttgtcttttgtatcaataaagtggcatagcgggaaatctcatccccaaagtcagttgtaaagaggttaggtaacctcacaacaccctacagaaaa |
42995946 |
T |
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| Q |
207 |
gaaaagnnnnnnnnnnnnnncacaaataaacatcaaaacattcgtagcaacagtgaaacgcatgaactggatatgtaaaacgaaacattaacactgacat |
306 |
Q |
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| T |
42995947 |
gaaaa-----aaacataaaacacaaataaacatcaaaacattcgtagcagcagtgaaacgcatgaacgggatatgtaaaacgaaacattaacaccgacat |
42996041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 202
Target Start/End: Original strand, 21005484 - 21005609
Alignment:
| Q |
78 |
caccgtttactctctcaactaagacttcaaactggttgtcttttgtttcaat-aaagtggcataacgggtaatctcatccccaaagtcagctgtaaagag |
176 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||| || || || |||||| | ||| |||||||||||||||||||| | | ||| || |
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| T |
21005484 |
caccatttactctctcaactaagacttcaaactggttttcttttgtgtctatcaaggtggcaaagcggctaatctcatccccaaagtcaacagaaaatag |
21005583 |
T |
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| Q |
177 |
gttagataacctcacaacaccctaca |
202 |
Q |
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| T |
21005584 |
gttaggcaacctaacagcgccctaca |
21005609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 92 - 200
Target Start/End: Complemental strand, 16981890 - 16981781
Alignment:
| Q |
92 |
tcaactaagacttcaaactggttgtcttttgtttcaat-aaagtggcataacgggtaatctcatccccaaagtcagctgtaaagaggttagataacctca |
190 |
Q |
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||||| |||| |||||||||||| |||||||| ||||| ||||||||||| | ||| |||||||| |||||||||||| ||||||||| | ||| |||| |
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| T |
16981890 |
tcaaccaagatttcaaactggttctcttttgtatcaatcaaagtggcatatcaggtgatctcatctccaaagtcagctccaaagaggtttggtaatctca |
16981791 |
T |
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| Q |
191 |
caacacccta |
200 |
Q |
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| T |
16981790 |
caacacccta |
16981781 |
T |
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