View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21040_high_1 (Length: 963)
Name: NF21040_high_1
Description: NF21040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21040_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 558; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 361 - 934
Target Start/End: Original strand, 48669127 - 48669700
Alignment:
| Q |
361 |
tattctgctgttccaactatggctactaacgaaggtgacatgttctcagcagagattgtgaaccgtgggattgaatcatcgggtccgaacgccggttcat |
460 |
Q |
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| T |
48669127 |
tattctgctgttccaactatggctactaacgaaggtgacatgttctcagcagagattgtgaaccgtgggattgaatcatcgggtccgaacgccggttcat |
48669226 |
T |
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| Q |
461 |
tgacgttctctgttcgtgttcggagacggttaccggattttcttcaatctgtgaaccttaagtatgtgaaattgggttaccattatctgataaaccatgg |
560 |
Q |
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| T |
48669227 |
tgacgttctctgtccgtgttcggagacggttaccggattttcttcaatctgtgaaccttaagtatgtgaaattgggttaccattatctgataaaccatgg |
48669326 |
T |
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| Q |
561 |
tgtttatttgttcactataccaattctacttgttgtgtttagtgctgaggttggtagtcttagcaaagaagatctttggaagaagatttgggaagatgca |
660 |
Q |
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| T |
48669327 |
tgtttatttgttcactataccaattctacttgttgtgtttagtgctgaggttggtagtcttagcaaagaagatctttggaagaagatttgggaagatgca |
48669426 |
T |
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| Q |
661 |
acttatgatcttgcatctgttctctcttctcttgctgtctttgttttcactttcactctttacttcatgtcaaggacacgtcctatttatctcattgatt |
760 |
Q |
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| T |
48669427 |
acttatgatcttgcatctgttctctcttctcttgctgtctttgttttcactttcactctttacttcatgtcaaggccacgtcctatttatctcattgatt |
48669526 |
T |
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| Q |
761 |
ttgcatgctatcaacctgatgatgaactcaaggtatgcacacaaaaactttataaatatgcaaatgcatctattactatttaattaaattaatcaatcaa |
860 |
Q |
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| T |
48669527 |
ttgcatgctatcaacctgatgatgaactcaaggtatgcacacaaaaactttataaatatgcaaatgcatctattactatttaattaaattaatcaatcaa |
48669626 |
T |
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| Q |
861 |
cgcgtggttgatccgagtgttatctactcagataccttaaacaagtgatcacaagtttcatctctaactcttgt |
934 |
Q |
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| T |
48669627 |
cgcgtggttgatccaagtgttatctactcagataccttaaacaagtgatcacgagtttcatctctaactcttgt |
48669700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 48668784 - 48669045
Alignment:
| Q |
18 |
gatataaatgtccaaatatctttactaattttctaattaagaatacaatagagtaagagtaaggaaagatggaaaaacagatagtatagtaataaaaaga |
117 |
Q |
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| T |
48668784 |
gatataaatgtccaaatatctttactaattttctaattaagaatacaatagagtaagagtaaggaaagatggaaaaacagatagtatagtaataaaaaga |
48668883 |
T |
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| Q |
118 |
tagcagttccccctcctctatgaactttaatcccatgcacccacttgcattaaatgaagaaattaattccattgaaatttcccaactacacaaacaccaa |
217 |
Q |
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| T |
48668884 |
tagcagttccccctcctctatgaactttaatcccatgcacccacttgcattaaatgaagaaattaattccattgaaatttcccaactacacaaacaccaa |
48668983 |
T |
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| Q |
218 |
ttaggtattagcattaactcttttccacccaccttatgtaaaatcaatttcatggatttcat |
279 |
Q |
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| T |
48668984 |
ttaggtattagcattaactcttttccacccacctcatgtaaaatcaatttcatggatttcat |
48669045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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