View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21040_high_12 (Length: 317)

Name: NF21040_high_12
Description: NF21040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21040_high_12
NF21040_high_12
[»] chr2 (22 HSPs)
chr2 (1-303)||(9321126-9321428)
chr2 (56-303)||(9328746-9328993)
chr2 (1-260)||(9060813-9061072)
chr2 (1-267)||(9283868-9284134)
chr2 (1-262)||(8573177-8573438)
chr2 (55-263)||(9274705-9274913)
chr2 (140-265)||(10347979-10348104)
chr2 (42-262)||(9316219-9316439)
chr2 (138-262)||(9065407-9065532)
chr2 (122-262)||(16269277-16269417)
chr2 (1-294)||(10336000-10336296)
chr2 (1-262)||(9292122-9292380)
chr2 (1-104)||(7115317-7115420)
chr2 (51-265)||(12012274-12012488)
chr2 (138-265)||(12005933-12006060)
chr2 (44-162)||(10353412-10353530)
chr2 (157-261)||(12018716-12018820)
chr2 (159-265)||(7115475-7115581)
chr2 (207-265)||(10353303-10353361)
chr2 (208-261)||(11987372-11987425)
chr2 (44-104)||(10348140-10348200)
chr2 (44-104)||(10372219-10372279)
[»] scaffold0667 (1 HSPs)
scaffold0667 (1-263)||(4673-4935)
[»] chr8 (1 HSPs)
chr8 (51-262)||(41966451-41966662)
[»] chr1 (4 HSPs)
chr1 (50-263)||(29467516-29467729)
chr1 (55-263)||(29423458-29423666)
chr1 (1-263)||(29452991-29453253)
chr1 (139-263)||(29443146-29443270)
[»] chr3 (1 HSPs)
chr3 (1-123)||(37462828-37462950)
[»] chr4 (1 HSPs)
chr4 (1-162)||(26575164-26575325)


Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 9321428 - 9321126
Alignment:
Q  1 tacaaactcctcagaatctcttggttagcctctccacacaactctttttatgattcacatgtcagactcttcagttctaaaacaaactcgtggaaaataa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  9321428 tacaaactcctcagaatctcttggttagcctctccacacaactctttttatgattcacatgtcagactcttcagctctataacaaactcgtggaaaataa 9321329  T
Q  101 ttcccagtttgcggtactctcttatctatgctcaattcatgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattaca 200  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9321328 ttcccagtatgccgtactctcttatctatgctcaattcatgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattaca 9321229  T
Q  201 tccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctgatgttgataatagtaatgagagttttgaaattgatgtt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9321228 tccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctgatgttcataatagtaatgagagttttgaaattgatgtt 9321129  T
Q  301 gat 303  Q
    |||    
T  9321128 gat 9321126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 56 - 303
Target Start/End: Complemental strand, 9328993 - 9328746
Alignment:
Q  56 cacatgtcagactcttcagttctaaaacaaactcgtggaaaataattcccagtttgcggtactctcttatctatgctcaattcatgggggtttttgttga 155  Q
    ||||||||||||||||||  |||||||||||||| ||||||||||||||   | |||  ||| ||||| |||||||||||  || ||||||||| |||||    
T  9328993 cacatgtcagactcttcaactctaaaacaaactcttggaaaataattcctgctatgccctacgctcttgtctatgctcaaaacacgggggttttggttga 9328894  T
Q  156 gaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcct 255  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9328893 gaattctcttcactggataatgactaagaaacttggtggattacatccttctttaattgttgcgtttaacctaacacttgaaattttcaatgtggttcct 9328794  T
Q  256 cttcctgatgttgataatagtaatgagagttttgaaattgatgttgat 303  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  9328793 cttcctgatgttgataatagtaataagagttttgaaattgatgttgat 9328746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 9060813 - 9061072
Alignment:
Q  1 tacaaactcctcagaatctcttggttagcctctccacacaactctttttatgattcacatgtcagactcttcagttctaaaacaaactcgtggaaaataa 100  Q
    |||||||||||||||||| ||||||||    ||| ||| |||  ||||||||||||||||||||| ||||| || |  ||||||||||||||||||| ||    
T  9060813 tacaaactcctcagaatcacttggttatttgctcgacaaaacattttttatgattcacatgtcagtctctttagcttgaaaacaaactcgtggaaaacaa 9060912  T
Q  101 ttcccagtttgcggtactctcttatctatgctcaattcatgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattaca 200  Q
    |||||||| ||| |||| |||||   |||| ||||  |||||||||||||||| ||||||||||||||||| | ||| | |||||||||| ||| | | |    
T  9060913 ttcccagtatgccgtacgctcttcaatatgttcaagccatgggggtttttgttcagaattctcttcactgggttatggccaagaaacttgatgggtcata 9061012  T
Q  201 tccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcc 260  Q
    |||||  |||||||| ||||||||||| ||||||||||||||||||| ||||||||||||    
T  9061013 tccttggttaattgtcgcatttaacctcacacttgaaattttcaatgaggttcctcttcc 9061072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 9283868 - 9284134
Alignment:
Q  1 tacaaactcctcagaatctcttggttagcctctccacacaactctttttatgattcacatgtcagactcttcagttctaaaacaaactcgtggaaaataa 100  Q
    |||||||||||| ||||||||||| |||  |||| ||| |||||||||||| ||||||||| |||||||||||| || ||||||||||||||||||||||    
T  9283868 tacaaactcctccgaatctcttggctagtatctctacaaaactctttttatcattcacatgccagactcttcagctccaaaacaaactcgtggaaaataa 9283967  T
Q  101 ttcccagtttgcggtactctcttatctatgctcaattcatgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattaca 200  Q
    |||| | | |||  ||| || ||  ||||||||||  ||||||||||||||||||||||||| ||||||||||||||  |||||| |||| ||| | | |    
T  9283968 ttcctattatgccctacactgtttactatgctcaagccatgggggtttttgttgagaattctattcactggataatggaaaagaatcttgatgggtcaga 9284067  T
Q  201 tccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctgatgtt 267  Q
     | || ||||||||| || |||||||||||||| ||  ||||||| | |||||||||||||| ||||    
T  9284068 cctttgtttaattgtcgcgtttaacctaacactagaggttttcaaagaggttcctcttcctgctgtt 9284134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 8573177 - 8573438
Alignment:
Q  1 tacaaactcctcagaatctcttggttagcctctccacacaactctttttatgattcacatgtcagactcttcagttctaaaacaaactcgtggaaaataa 100  Q
    |||||||||||| ||||||||||||||| | ||| ||| ||| ||||||||||||||||||||| |||||| || |  ||||||||||||||||||| ||    
T  8573177 tacaaactcctccgaatctcttggttagtcactcaacataaccctttttatgattcacatgtcacactctttagcttgaaaacaaactcgtggaaaacaa 8573276  T
Q  101 ttcccagtttgcggtactctcttatctatgctcaattcatgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattaca 200  Q
    ||||||||  ||  ||| |||||   |||| ||||  |||||||||||||||| ||||||||||||||||| | ||| | |||||||||| ||| | | |    
T  8573277 ttcccagtacgccatacgctcttcaatatgttcaagccatgggggtttttgttcagaattctcttcactgggttatggccaagaaacttgatgggtcata 8573376  T
Q  201 tccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctg 262  Q
    |||||  |||||||| ||||||||||| ||||||||||||||| | | ||||||||||||||    
T  8573377 tccttggttaattgtcgcatttaacctcacacttgaaattttctacgaggttcctcttcctg 8573438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 55 - 263
Target Start/End: Complemental strand, 9274913 - 9274705
Alignment:
Q  55 tcacatgtcagactcttcagttctaaaacaaactcgtggaaaataattcccagtttgcggtactctcttatctatgctcaattcatgggggtttttgttg 154  Q
    |||||||| ||||||||||| |  |||||||||||||||||||||||||||||| ||| |||| ||||||  |||| ||||  ||||||| |||||||||    
T  9274913 tcacatgtgagactcttcagcttgaaaacaaactcgtggaaaataattcccagtatgccgtacgctcttaaatatgttcaagccatggggatttttgttg 9274814  T
Q  155 agaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcc 254  Q
    ||||||||||||||||| ||||||| | | || ||| ||  | ||| |||| |||||||||||| ||||||||||||||||| |||||||||||||||||    
T  9274813 agaattctcttcactgggtaatgactagggaaattgatgagtcacacccttgtttaattgttgcgtttaacctaacacttgatattttcaatgtggttcc 9274714  T
Q  255 tcttcctga 263  Q
    |||||||||    
T  9274713 tcttcctga 9274705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 140 - 265
Target Start/End: Complemental strand, 10348104 - 10347979
Alignment:
Q  140 tgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaat 239  Q
    ||||||||||||||||||||||| |||||||||| ||||| |||||||||| ||| |||||||||||||||||||| || |||||||| |||||||||||    
T  10348104 tgggggtttttgttgagaattctattcactggattatgacgaagaaacttgatgggttacatccttctttaattgtcgcgtttaacctcacacttgaaat 10348005  T
Q  240 tttcaatgtggttcctcttcctgatg 265  Q
    |||||||| |||||||||||||||||    
T  10348004 tttcaatgaggttcctcttcctgatg 10347979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 42 - 262
Target Start/End: Complemental strand, 9316439 - 9316219
Alignment:
Q  42 ctctttttatgattcacatgtcagactcttcagttctaaaacaaactcgtggaaaataattcccagtttgcggtactctcttatctatgctcaattcatg 141  Q
    |||||||||||||||||||||||| ||||| || |  ||||||||||||||||||| |||||||||| ||| |||| |||||   |||| ||||  ||||    
T  9316439 ctctttttatgattcacatgtcagtctctttagcttgaaaacaaactcgtggaaaacaattcccagtatgccgtacgctcttcaatatgttcaagccatg 9316340  T
Q  142 ggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattt 241  Q
    |||||||||||| ||||||||||||||||| |||||||  || ||  ||  |  | ||| |||| ||| ||||| || ||||||||||||||||| ||||    
T  9316339 ggggtttttgttcagaattctcttcactgggtaatgactcagcaaagtgaagagtcacacccttgtttcattgtcgcgtttaacctaacacttgagattt 9316240  T
Q  242 tcaatgtggttcctcttcctg 262  Q
    |||||||||||||||||||||    
T  9316239 tcaatgtggttcctcttcctg 9316219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 138 - 262
Target Start/End: Original strand, 9065407 - 9065532
Alignment:
Q  138 catgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaa 237  Q
    ||||||||||||||||||||||||| |||||| ||||||||| |||||||| | | | |||||||||||||||||||||||||||||||| |||||||||    
T  9065407 catgggggtttttgttgagaattctattcacttgataatgacgaagaaactagatcggttacatccttctttaattgttgcatttaacctcacacttgaa 9065506  T
Q  238 attttcaa-tgtggttcctcttcctg 262  Q
    |||||||| || |||||| |||||||    
T  9065507 attttcaattgaggttccccttcctg 9065532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 122 - 262
Target Start/End: Complemental strand, 16269417 - 16269277
Alignment:
Q  122 ttatctatgctcaattcatgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatt 221  Q
    |||| ||||||||| |||||||||||||||||||||||||| ||| ||| |||||| | ||||||||||  || ||||||||||||||||| || || ||    
T  16269417 ttatttatgctcaaatcatgggggtttttgttgagaattctattcgctgtataatggcgaagaaacttgacgggttacatccttctttaatcgtcgcgtt 16269318  T
Q  222 taacctaacacttgaaattttcaatgtggttcctcttcctg 262  Q
    ||||||||||||||| |||||||| | ||||||||||||||    
T  16269317 taacctaacacttgagattttcaacgaggttcctcttcctg 16269277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 10336296 - 10336000
Alignment:
Q  1 tacaaactcctcagaatctcttggttagcc--tctcca-cacaactctttttatgattcacatgtcagactcttcagttctaaaacaaactcgtggaaaa 97  Q
    |||||||||||||||||||||||||| | |  ||| || ||| |  ||||| || |||||||| | | ||||||||| || ||||||||||| |||||||    
T  10336296 tacaaactcctcagaatctcttggttcgtcgatctacaacaccatacttttgataattcacatttgacactcttcagctcgaaaacaaactcttggaaaa 10336197  T
Q  98 taattcccagtttgcggtactctcttatctatgctcaattcatgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggatt 197  Q
     | ||||   | ||| |||   ||||  |||| ||| |  |||||| |||||||||||||||||||||||||||||||||||   |||||||| ||| ||    
T  10336196 cacttccggatatgccgtatattctttactatactctaaccatgggtgtttttgttgagaattctcttcactggataatgactccgaaacttgatgggtt 10336097  T
Q  198 acatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctgatgttgataa-tagtaatgagagttttgaaatt 294  Q
    ||| |||| |||||||| ||| ||||| ||| ||||||| |||||||||| |||||||||||||||||   |||| |||||||||||||||| |||||    
T  10336096 acaaccttgtttaattgctgcgtttaatctatcacttgagattttcaatgaggttcctcttcctgatg-aaataattagtaatgagagttttaaaatt 10336000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 9292380 - 9292122
Alignment:
Q  1 tacaaactcctcagaatctcttggttagcctctccacacaactctttttatgattcacatgtcagactcttcagttctaaaacaaactcgtggaaaataa 100  Q
    |||||||||||||||||||||||| |||||   | |||  ||||||||   ||| |||| || ||||||||||| || ||||| |||||||||||||| |    
T  9292380 tacaaactcctcagaatctcttggatagccgacctacattactctttt---gatccacaggtgagactcttcagctccaaaactaactcgtggaaaatca 9292284  T
Q  101 ttcccagtttgcggtactctcttatctatgctcaattcatgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattaca 200  Q
    |||| ||| ||| |||| |||||   |||| ||||   ||||||||||||||| |||||||| | |||||| |||||||   || | ||| ||  | |||    
T  9292283 ttcctagtatgccgtacgctcttcaatatgttcaagctatgggggtttttgttcagaattctatccactgggtaatgactcggacaattgttgagtcaca 9292184  T
Q  201 tccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctg 262  Q
     |||| ||| ||||| || ||||||||||||||||| | |||||||||||||||| ||||||    
T  9292183 cccttgtttcattgtcgcttttaacctaacacttgagactttcaatgtggttccttttcctg 9292122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 7115317 - 7115420
Alignment:
Q  1 tacaaactcctcagaatctcttggttagcctctccacacaactctttttatgattcacatgtcagactcttcagttctaaaacaaactcgtggaaaataa 100  Q
    |||||||| ||||||||||||||||||  |  |||||  ||||||||||||||||||||  |||||||||||||||  |||||||||||||||||||| |    
T  7115317 tacaaacttctcagaatctcttggttatgcaatccaccaaactctttttatgattcacagatcagactcttcagtttgaaaacaaactcgtggaaaatga 7115416  T
Q  101 ttcc 104  Q
    ||||    
T  7115417 ttcc 7115420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 51 - 265
Target Start/End: Original strand, 12012274 - 12012488
Alignment:
Q  51 tgattcacatgtcagactcttcagttctaaaacaaactcgtggaaaataattcccagtttgcggtactctcttatctatgctcaattcatgggggttttt 150  Q
    ||||||| |||||||||||||||  || |||||||||||||||||| || |||| ||| |    ||   ||||  |||||||| |  |||||| ||||||    
T  12012274 tgattcatatgtcagactcttcacctcgaaaacaaactcgtggaaagtacttcctagtatagactatgttctttgctatgctctaaccatgggagttttt 12012373  T
Q  151 gttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtgg 250  Q
    ||||||||||||||||| ||||||| |   ||||| | || ||| ||||||||   ||||||||| || |||||||||||||||||  ||||||||| ||    
T  12012374 gttgagaattctcttcattggataacggtgaagaatcctgatgggttacatccccgtttaattgtcgcgtttaacctaacacttgagcttttcaatgagg 12012473  T
Q  251 ttcctcttcctgatg 265  Q
    ||||  |||||||||    
T  12012474 ttccatttcctgatg 12012488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 138 - 265
Target Start/End: Original strand, 12005933 - 12006060
Alignment:
Q  138 catgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaa 237  Q
    |||||||||||||||||||||||||||||||||||| |||   ||||||| || ||| |||||||    ||||||| | || |||||||||||||||||     
T  12005933 catgggggtttttgttgagaattctcttcactggatgatggtcaagaaacctgatgggttacatcagcgtttaattttcgcgtttaacctaacacttgag 12006032  T
Q  238 attttcaatgtggttcctcttcctgatg 265  Q
     ||||||| | ||||||| |||||||||    
T  12006033 gttttcaacgaggttccttttcctgatg 12006060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 44 - 162
Target Start/End: Complemental strand, 10353530 - 10353412
Alignment:
Q  44 ctttttatgattcacatgtcagactcttcagttctaaaacaaactcgtggaaaataattcccagtttgcggtactctcttatctatgctcaattcatggg 143  Q
    ||||||||||| ||||||||||||||||||| |  ||||||||||| |||||| ||||||| | |||||  || ||||||  |||||||  |   |||||    
T  10353530 ctttttatgatccacatgtcagactcttcagcttgaaaacaaactcatggaaagtaattcctaatttgccttattctctttactatgctttaacaatggg 10353431  T
Q  144 ggtttttgttgagaattct 162  Q
    |||||||||||||||||||    
T  10353430 ggtttttgttgagaattct 10353412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 261
Target Start/End: Original strand, 12018716 - 12018820
Alignment:
Q  157 aattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctc 256  Q
    ||||||||||| ||||||||||||| |||| ||| |   || || ||||  |||||||| ||||||||||| ||||| || |||||||||| ||||||||    
T  12018716 aattctcttcattggataatgacaaggaaatttgataactttcaacctttgttaattgtcgcatttaacctcacactcgatattttcaatgaggttcctc 12018815  T
Q  257 ttcct 261  Q
    |||||    
T  12018816 ttcct 12018820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 265
Target Start/End: Original strand, 7115475 - 7115581
Alignment:
Q  159 ttctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctctt 258  Q
    |||| |||||||||||||| |   |||||||| ||  | ||| |||| ||||||||| || |||||||||||||||||   ||||| || ||||||||||    
T  7115475 ttctgttcactggataatgtctcggaaacttgatgagtcacacccttgtttaattgtcgcgtttaacctaacacttgagcgtttcattgaggttcctctt 7115574  T
Q  259 cctgatg 265  Q
    |||||||    
T  7115575 cctgatg 7115581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 265
Target Start/End: Complemental strand, 10353361 - 10353303
Alignment:
Q  207 tttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctgatg 265  Q
    ||||||| | || ||||||||||||||||| | |||||||| |||||||||||||||||    
T  10353361 tttaattctcgcgtttaacctaacacttgagactttcaatgaggttcctcttcctgatg 10353303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 11987372 - 11987425
Alignment:
Q  208 ttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcct 261  Q
    |||||||| ||||||||||||||||| ||  ||||||||| ||||||| |||||    
T  11987372 ttaattgtcgcatttaacctaacactcgaggttttcaatgaggttccttttcct 11987425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 10348200 - 10348140
Alignment:
Q  44 ctttttatgattcacatgtcagactcttcagttctaaaacaaactcgtggaaaataattcc 104  Q
    ||||||||||| |||| || ||||||||||| |  ||||||||||| ||||| ||||||||    
T  10348200 ctttttatgatccacaagtgagactcttcagcttgaaaacaaactcatggaagataattcc 10348140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 10372279 - 10372219
Alignment:
Q  44 ctttttatgattcacatgtcagactcttcagttctaaaacaaactcgtggaaaataattcc 104  Q
    ||||||||||| |||||||  |||||||||| || ||| | ||||||||||| ||||||||    
T  10372279 ctttttatgatccacatgttcgactcttcagctccaaagctaactcgtggaagataattcc 10372219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 4935 - 4673
Alignment:
Q  1 tacaaactcctcagaatctcttggttagcctctccacacaactctttttatgattcacatgtcagactcttcagttctaaaacaaactcgtggaaaataa 100  Q
    |||||| |||||||| |||||||||||| ||||| ||| ||| ||||||||||| ||||||| |||||||| || |  ||||| ||||||||||||||||    
T  4935 tacaaaatcctcagactctcttggttagtctctctacaaaaccctttttatgatccacatgttagactctttagcttgaaaaccaactcgtggaaaataa 4836  T
Q  101 ttcccagtttgcggtactctcttatctatgctcaattcatgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattaca 200  Q
    |||| | | ||| |||| | ||| ||| |||||||  |||||||||||| |||||| ||||| |||||||||||||| |||||||||||| ||| |||||    
T  4835 ttcctactatgccgtacgcccttgtctttgctcaaaccatgggggttttggttgaggattctattcactggataatggcaaagaaacttgatgggttaca 4736  T
Q  201 tccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctga 263  Q
    ||||||| ||||||| || |||||||||||||||||||||||||||| |||||||||||||||    
T  4735 tccttctctaattgtcgcttttaacctaacacttgaaattttcaatgaggttcctcttcctga 4673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 51 - 262
Target Start/End: Original strand, 41966451 - 41966662
Alignment:
Q  51 tgattcacatgtcagactcttcagttctaaaacaaactcgtggaaaataattcccagtttgcggtactctcttatctatgctcaattcatgggggttttt 150  Q
    ||||||||||||||| || || || |||||||  |||||||||||||||||||||||  ||| |||  |||||  ||||||||||  |||||||||||||    
T  41966451 tgattcacatgtcaggctatttagctctaaaaacaactcgtggaaaataattcccagaatgccgtatgctctttactatgctcaaaccatgggggttttt 41966550  T
Q  151 gttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtgg 250  Q
    ||| | ||||||||||||||||||||||| ||| |||||| ||||||||| |||| ||||||||| || ||||||||||||||||| ||||||||   ||    
T  41966551 gttcacaattctcttcactggataatgaccaaggaacttgatggattacacccttgtttaattgtcgcgtttaacctaacacttgagattttcaaccagg 41966650  T
Q  251 ttcctcttcctg 262  Q
    ||||||||||||    
T  41966651 ttcctcttcctg 41966662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 50 - 263
Target Start/End: Original strand, 29467516 - 29467729
Alignment:
Q  50 atgattcacatgtcagactcttcagttctaaaacaaactcgtggaaaataattcccagtttgcggtactctcttatctatgctcaattcatgggggtttt 149  Q
    ||||||||||||| | ||||||||| || ||||| ||||| |||||| || || | ||| ||| ||||||||||  |||| |||||  ||||| ||||||    
T  29467516 atgattcacatgttacactcttcagctcgaaaacgaactcctggaaagtactttctagtatgccgtactctctttactatcctcaaaccatggtggtttt 29467615  T
Q  150 tgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtg 249  Q
    |||||||||||||||||| ||||||||||  |||||||||| ||| |||||  ||| ||||||| | || ||||||||||  ||||| |||||||||| |    
T  29467616 tgttgagaattctcttcattggataatgaagaagaaacttgatgggttacaatcttgtttaattatcgcgtttaacctaaagcttgagattttcaatgag 29467715  T
Q  250 gttcctcttcctga 263  Q
    ||||||||||||||    
T  29467716 gttcctcttcctga 29467729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 55 - 263
Target Start/End: Complemental strand, 29423666 - 29423458
Alignment:
Q  55 tcacatgtcagactcttcagttctaaaacaaactcgtggaaaataattcccagtttgcggtactctcttatctatgctcaattcatgggggtttttgttg 154  Q
    |||||||  ||||||||||| || ||||||||||||||||||  | |||| |   |||  ||| |||||  ||||||||||   ||||||||||||||||    
T  29423666 tcacatgcgagactcttcagctcgaaaacaaactcgtggaaagaacttcctaccatgccttacactctttactatgctcaaacaatgggggtttttgttg 29423567  T
Q  155 agaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcc 254  Q
    |||||||||||||||||||||||||  ||||||||| |   ||  | |||  | |||||||||| ||||||||||||| ||| |||||||||| ||||||    
T  29423566 agaattctcttcactggataatgacggagaaacttgatccgttgaaacctcgtgtaattgttgcgtttaacctaacacatgagattttcaatgaggttcc 29423467  T
Q  255 tcttcctga 263  Q
    | |||||||    
T  29423466 ttttcctga 29423458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 29452991 - 29453253
Alignment:
Q  1 tacaaactcctcagaatctcttggttagcctctccacacaactctttttatgattcacatgtcagactcttcagttctaaaacaaactcgtggaaaataa 100  Q
    |||||||||||||||||||||||  | |    ||||||  |||||  || |||||||||||| ||||||||||| || ||||  ||||||||||||        
T  29452991 tacaaactcctcagaatctcttgtatcgttgatccacaatactctacttctgattcacatgtgagactcttcagctcgaaaatgaactcgtggaaagacc 29453090  T
Q  101 ttcccagtttgcggtactctcttatctatgctcaattcatgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattaca 200  Q
    |||| ||| ||| |||| |||||  |||| ||| |     |||||||||||||||||||||||||||||||||||||||   ||||||||||   || ||    
T  29453091 ttcctagtatgccgtacgctctttcctatcctcgaacagagggggtttttgttgagaattctcttcactggataatgactcggaaacttggtcagttgca 29453190  T
Q  201 tccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctga 263  Q
      ||  | |||||||||| |||||||||||||  || |||||||||| ||||||| |||||||    
T  29453191 atctcgtgtaattgttgcgtttaacctaacacacgagattttcaatgaggttccttttcctga 29453253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 139 - 263
Target Start/End: Original strand, 29443146 - 29443270
Alignment:
Q  139 atgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaa 238  Q
    ||||||| ||||||||||||||| ||||||||| |||||||   |||||||| |   || || |||  |  |||||| || |||||||||||||| || |    
T  29443146 atgggggattttgttgagaattcccttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacctaacactcgaga 29443245  T
Q  239 ttttcaatgtggttcctcttcctga 263  Q
    ||||||||| ||||||| |||||||    
T  29443246 ttttcaatgaggttccttttcctga 29443270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 37462950 - 37462828
Alignment:
Q  1 tacaaactcctcagaatctcttggttagcctctccacacaactctttttatgattcacatgtcagactcttcagttctaaaacaaactcgtggaaaataa 100  Q
    |||||||||||||||||||||||| |   |  || ||| ||| ||||||||||| ||||||| ||||||||||| || |||||||||||||||||||||     
T  37462950 tacaaactcctcagaatctcttggcttctcgatctacaaaaccctttttatgatccacatgtgagactcttcagctccaaaacaaactcgtggaaaatag 37462851  T
Q  101 ttcccagtttgcggtactctctt 123  Q
    |||| ||||| |  |||||||||    
T  37462850 ttcctagttttccctactctctt 37462828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 26575325 - 26575164
Alignment:
Q  1 tacaaactcctcagaatctcttggttagcctctccacacaactctttttatgattcacatgtcagactcttcagttctaaaacaaactcgtggaaaataa 100  Q
    ||||||||||||||||||||||  ||   |  || ||| ||| ||||||||||| ||||||| ||||||||||| |  ||||||||||| ||||||||||    
T  26575325 tacaaactcctcagaatctcttacttgctcgatctacaaaaccctttttatgatccacatgttagactcttcagcttgaaaacaaactcatggaaaataa 26575226  T
Q  101 ttcccagtttgcggtactctcttatctatgctcaattcatgggggtttttgttgagaattct 162  Q
    |||| | ||| |  ||| |||||  |||| ||| |   ||||| ||||||||||||||||||    
T  26575225 ttcctaattttccttacgctctttactatactcgaacaatgggtgtttttgttgagaattct 26575164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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