View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21040_high_15 (Length: 277)
Name: NF21040_high_15
Description: NF21040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21040_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 20181836 - 20182081
Alignment:
| Q |
19 |
cgttgttgaagttgtagaactgtccgaacgagaagaagatgaagttgttgaatgaatctcgccaagaatgcggtgaggttcagatagcttgcgagaggag |
118 |
Q |
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| T |
20181836 |
cgttgttgaagttgtagaactgtccgaacgagaagaagatgaagttgttgaatgaatctcgccaagaatgcggtgaggttcagatagcttgcgagaggag |
20181935 |
T |
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| Q |
119 |
aagcggttgcgaatgtcgacgaaatcttgctccggcgtgccgaatttcccggcgccgatggtaccacgtaggacaacaatggttaggaagagacagagga |
218 |
Q |
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| T |
20181936 |
aagcggttgcgaatgtcgacgaaatcttgctccggcgtgccgaatttcccggcgccgatggtaccacgtaggacaacaatggttaggaagagacagagga |
20182035 |
T |
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| Q |
219 |
ttgtaaccttacaatggttaagaaatctctggaattttctcgccct |
264 |
Q |
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| T |
20182036 |
ttgtaaccttacaatggttaagaaatctctggaattttctcgccct |
20182081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 44269184 - 44269429
Alignment:
| Q |
19 |
cgttgttgaagttgtagaactgtccgaacgagaagaagatgaagttgttgaatgaatctcgccaagaatgcggtgaggttcagatagcttgcgagaggag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44269184 |
cgttgttgaagttgtagaactgtccgaacgagaagaagatgaagttgttgaatgaatctcgccaagaatgcggtgaggttcagatagcttgcgagaggag |
44269283 |
T |
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| Q |
119 |
aagcggttgcgaatgtcgacgaaatcttgctccggcgtgccgaatttcccggcgccgatggtaccacgtaggacaacaatggttaggaagagacagagga |
218 |
Q |
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| T |
44269284 |
aagcggttgcgaatgtcgacgaaatcttgctccggcgtgccgaatttcccggcgccgatggtaccacgtaggacaacaatggttaggaagagacagagga |
44269383 |
T |
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| Q |
219 |
ttgtaaccttacaatggttaagaaatctctggaattttctcgccct |
264 |
Q |
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| T |
44269384 |
ttgtaaccttacaatggttaagaaatctctggaattttctcgccct |
44269429 |
T |
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