View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21040_high_18 (Length: 266)
Name: NF21040_high_18
Description: NF21040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21040_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 247
Target Start/End: Complemental strand, 46129827 - 46129589
Alignment:
| Q |
11 |
cagagatgtgtcaataaatgttcaaa-tttggttaactattaagaacttatgtgcaccacatcatgatttaggaaaacacatacacctatagattatata |
109 |
Q |
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| T |
46129827 |
cagagatgtgtcggcaaatgttcaaaatttggttaaaaattaagaacttatgtgcaccacatcatgatttaggaaaacacatacgcctatagattatata |
46129728 |
T |
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| Q |
110 |
atgtgcaacactttgattcattaaaagtaatctagatgaggacaatacacagtggcatcatagaatttaggcataacataagaaacgagt-aaacacccc |
208 |
Q |
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| T |
46129727 |
atgtgtaacactttgattcattaaaagtaatctagatgaggacaatacacagtggcatcatagaatttaggcataacataagaaacgagtaaaacacccc |
46129628 |
T |
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| Q |
209 |
aggtaaaatacaacgactacattcataccccctgacagt |
247 |
Q |
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| T |
46129627 |
aggtaaaatacaaccactacattcataccccctgacagt |
46129589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 14 - 247
Target Start/End: Complemental strand, 46702608 - 46702374
Alignment:
| Q |
14 |
agatgtgtcaataaatgttcaaatttggttaactattaagaacttatgtgcaccacatcatgatttaggaaaacacatacacctatagattatataatgt |
113 |
Q |
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| T |
46702608 |
agatgtgtcaataaatgttcaaatttggttaacaattaagaacttatgtgcactacatcatgatttaggaaaacacatacacctatagattacataacgt |
46702509 |
T |
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| Q |
114 |
gcaacactttgattcattaaaagtaatctagatgaggacaatacacagtggcatcatagaatttaggcat-aacataagaaacgagta-aacaccccagg |
211 |
Q |
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| T |
46702508 |
gtaacactttgttttattaaaagtaatctagatgaggacattacatagtggcatcgt-taatttaggcataaacataagaaacgagtattacaccccaga |
46702410 |
T |
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| Q |
212 |
taaaatacaacgactacattcataccccctgacagt |
247 |
Q |
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| T |
46702409 |
taaaatataatgactacattcataccccctgacagt |
46702374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 243
Target Start/End: Complemental strand, 46123805 - 46123566
Alignment:
| Q |
11 |
cagagatgtgtcaataaatgttcaaa-tttggttaactattaagaacttatgtgcaccacatcatgatttagg--aaaacacatacac--ctatagatta |
105 |
Q |
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|||||||||||| ||||||||||| ||||||||| |||||||||||||| | || ||||||||||||||| || |||||||||| |||| || |
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| T |
46123805 |
cagagatgtgtcggcaaatgttcaaaatttggttaaaaattaagaacttatgagaactacatcatgatttagggaaacacacatacactactatgttata |
46123706 |
T |
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| Q |
106 |
tataatgtgcaacactttgattcattaaaagtaatctagatgaggacaatacacagtggcatcatagaatttaggcataacataagaa-acgagta-aac |
203 |
Q |
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| T |
46123705 |
tacaatgtataatactttttttttttaaaagtaaactcgaggaggacgttacacagtggtatcatataatttaggcatcacattagaagaagagtattac |
46123606 |
T |
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| Q |
204 |
accccaggtaaaatacaacgactacattcataccccctga |
243 |
Q |
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| T |
46123605 |
atcccaaataaaatataatgattacattcataccccctga |
46123566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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