View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21040_high_22 (Length: 242)

Name: NF21040_high_22
Description: NF21040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21040_high_22
NF21040_high_22
[»] chr2 (36 HSPs)
chr2 (32-232)||(33751293-33751488)
chr2 (147-232)||(41436023-41436106)
chr2 (142-230)||(3100339-3100425)
chr2 (150-230)||(33880106-33880183)
chr2 (96-232)||(10818517-10818648)
chr2 (143-232)||(40964993-40965079)
chr2 (142-232)||(43077806-43077893)
chr2 (142-230)||(7213414-7213500)
chr2 (143-228)||(14284358-14284440)
chr2 (148-223)||(28925937-28926010)
chr2 (143-230)||(9724821-9724905)
chr2 (148-232)||(28108455-28108538)
chr2 (142-230)||(28572150-28572233)
chr2 (186-232)||(7648946-7648992)
chr2 (95-238)||(37247958-37248097)
chr2 (143-230)||(44534565-44534654)
chr2 (152-230)||(15859424-15859500)
chr2 (145-232)||(3123585-3123670)
chr2 (149-232)||(28301384-28301461)
chr2 (169-228)||(8031707-8031764)
chr2 (170-232)||(30757648-30757708)
chr2 (149-232)||(44194598-44194678)
chr2 (149-230)||(5212040-5212119)
chr2 (147-232)||(42881357-42881440)
chr2 (170-232)||(4794537-4794600)
chr2 (163-231)||(19515841-19515907)
chr2 (150-232)||(24775888-24775968)
chr2 (149-224)||(7650063-7650136)
chr2 (93-127)||(20696961-20696995)
chr2 (195-232)||(6075488-6075525)
chr2 (143-184)||(13375600-13375641)
chr2 (203-232)||(23684957-23684986)
chr2 (204-232)||(5007622-5007650)
chr2 (93-129)||(10394423-10394459)
chr2 (163-232)||(44284399-44284466)
chr2 (204-232)||(44424343-44424371)
[»] chr7 (34 HSPs)
chr7 (95-232)||(2846756-2846888)
chr7 (92-232)||(33584454-33584590)
chr7 (143-230)||(12308319-12308403)
chr7 (150-232)||(40038191-40038270)
chr7 (149-232)||(31581523-31581604)
chr7 (142-232)||(29434660-29434748)
chr7 (95-232)||(29257442-29257574)
chr7 (143-232)||(34963891-34963978)
chr7 (142-223)||(39693730-39693809)
chr7 (142-230)||(11616500-11616586)
chr7 (148-230)||(38181956-38182036)
chr7 (142-232)||(44604557-44604645)
chr7 (148-230)||(33774125-33774203)
chr7 (143-228)||(40590909-40590992)
chr7 (143-231)||(46288512-46288598)
chr7 (163-232)||(14648999-14649068)
chr7 (149-228)||(23703861-23703939)
chr7 (142-230)||(7425960-7426047)
chr7 (142-232)||(45890917-45891004)
chr7 (149-232)||(47453950-47454031)
chr7 (161-232)||(8149917-8149986)
chr7 (149-232)||(30462962-30463043)
chr7 (160-232)||(36117619-36117688)
chr7 (143-229)||(5724790-5724874)
chr7 (143-183)||(49100921-49100961)
chr7 (170-230)||(30659562-30659620)
chr7 (170-230)||(37264280-37264338)
chr7 (92-127)||(37496577-37496612)
chr7 (148-228)||(46095532-46095610)
chr7 (170-230)||(47238185-47238242)
chr7 (94-127)||(18234799-18234832)
chr7 (149-232)||(37157117-37157197)
chr7 (204-232)||(25778743-25778771)
chr7 (185-232)||(37496477-37496525)
[»] chr5 (27 HSPs)
chr5 (94-232)||(3725081-3725213)
chr5 (145-232)||(13716952-13717037)
chr5 (183-232)||(17243035-17243084)
chr5 (94-232)||(35334607-35334742)
chr5 (143-232)||(11099558-11099645)
chr5 (143-232)||(15814603-15814688)
chr5 (142-230)||(35646172-35646258)
chr5 (149-232)||(4412329-4412410)
chr5 (149-230)||(39008075-39008154)
chr5 (148-230)||(8692901-8692981)
chr5 (161-232)||(39183708-39183776)
chr5 (142-230)||(8369779-8369866)
chr5 (148-232)||(41184062-41184144)
chr5 (142-230)||(42575721-42575807)
chr5 (149-232)||(858281-858362)
chr5 (157-232)||(20189846-20189919)
chr5 (95-232)||(6610730-6610864)
chr5 (95-230)||(4044560-4044690)
chr5 (150-230)||(22582954-22583032)
chr5 (183-231)||(33988177-33988226)
chr5 (149-232)||(13135699-13135780)
chr5 (147-231)||(14259611-14259693)
chr5 (149-232)||(25814310-25814391)
chr5 (94-132)||(39060591-39060629)
chr5 (188-232)||(72186-72231)
chr5 (204-232)||(39212632-39212660)
chr5 (92-120)||(43525372-43525400)
[»] chr1 (47 HSPs)
chr1 (95-232)||(46495913-46496045)
chr1 (142-232)||(8327656-8327744)
chr1 (95-232)||(45889329-45889464)
chr1 (142-232)||(46536279-46536367)
chr1 (98-232)||(38664296-38664428)
chr1 (148-232)||(19533000-19533082)
chr1 (148-232)||(28839285-28839366)
chr1 (100-233)||(3555635-3555762)
chr1 (151-228)||(7785359-7785433)
chr1 (149-232)||(27698758-27698839)
chr1 (149-232)||(51749264-51749345)
chr1 (143-230)||(2219531-2219615)
chr1 (143-221)||(43895787-43895863)
chr1 (142-232)||(49494244-49494331)
chr1 (149-232)||(28277119-28277200)
chr1 (142-230)||(4466237-4466323)
chr1 (142-232)||(17724795-17724883)
chr1 (149-232)||(34877171-34877251)
chr1 (142-232)||(36467276-36467364)
chr1 (142-228)||(17342767-17342851)
chr1 (142-228)||(51848781-51848865)
chr1 (143-224)||(7787617-7787696)
chr1 (163-232)||(30749715-30749782)
chr1 (163-232)||(30771166-30771233)
chr1 (143-232)||(49944731-49944816)
chr1 (149-232)||(11324194-11324275)
chr1 (149-232)||(11482215-11482296)
chr1 (198-232)||(26755969-26756003)
chr1 (195-232)||(8773232-8773269)
chr1 (195-232)||(10370268-10370305)
chr1 (183-223)||(32347921-32347962)
chr1 (163-228)||(16956344-16956406)
chr1 (93-127)||(7787566-7787600)
chr1 (93-127)||(36057796-36057830)
chr1 (185-230)||(36232872-36232918)
chr1 (147-230)||(36784258-36784339)
chr1 (149-232)||(52830494-52830575)
chr1 (94-127)||(2886065-2886098)
chr1 (149-232)||(3718930-3719010)
chr1 (195-232)||(28908083-28908120)
chr1 (195-232)||(29225743-29225780)
chr1 (142-183)||(40987921-40987962)
chr1 (203-232)||(42309430-42309459)
chr1 (160-230)||(52432269-52432337)
chr1 (188-232)||(2571346-2571390)
chr1 (149-230)||(11425952-11426031)
chr1 (172-231)||(35622861-35622918)
[»] chr8 (35 HSPs)
chr8 (142-230)||(5391987-5392074)
chr8 (142-232)||(12653626-12653714)
chr8 (148-232)||(29615743-29615825)
chr8 (148-230)||(33190991-33191071)
chr8 (149-230)||(32241506-32241585)
chr8 (149-231)||(31410689-31410769)
chr8 (142-230)||(44790504-44790591)
chr8 (148-230)||(31132674-31132755)
chr8 (145-232)||(9014542-9014627)
chr8 (94-232)||(28802661-28802794)
chr8 (95-232)||(38252518-38252650)
chr8 (170-230)||(38908793-38908853)
chr8 (143-232)||(39171483-39171570)
chr8 (148-232)||(34287159-34287241)
chr8 (148-232)||(42558661-42558743)
chr8 (148-220)||(4480535-4480606)
chr8 (186-232)||(7258447-7258493)
chr8 (94-232)||(32967357-32967490)
chr8 (147-232)||(34133071-34133154)
chr8 (149-232)||(44615445-44615526)
chr8 (186-230)||(33925166-33925211)
chr8 (186-232)||(5962553-5962600)
chr8 (147-230)||(2349294-2349375)
chr8 (185-230)||(28791287-28791333)
chr8 (186-232)||(33746299-33746345)
chr8 (195-232)||(2195458-2195495)
chr8 (149-232)||(3442430-3442510)
chr8 (94-127)||(14689854-14689887)
chr8 (162-230)||(14748788-14748855)
chr8 (170-230)||(36012054-36012112)
chr8 (204-232)||(8418382-8418410)
chr8 (95-127)||(10729100-10729132)
chr8 (95-127)||(29451243-29451275)
chr8 (161-231)||(38201472-38201539)
chr8 (204-232)||(44975829-44975857)
[»] chr4 (50 HSPs)
chr4 (103-232)||(42185876-42186000)
chr4 (96-232)||(42024281-42024412)
chr4 (142-234)||(8294970-8295060)
chr4 (143-233)||(49812169-49812257)
chr4 (148-230)||(35998199-35998280)
chr4 (145-232)||(54729563-54729648)
chr4 (95-232)||(41710224-41710356)
chr4 (143-232)||(44020842-44020929)
chr4 (143-228)||(48740460-48740543)
chr4 (143-221)||(34020975-34021051)
chr4 (143-230)||(18849841-18849926)
chr4 (161-232)||(32559121-32559190)
chr4 (149-232)||(39979726-39979807)
chr4 (93-232)||(49306481-49306614)
chr4 (148-230)||(31862739-31862819)
chr4 (149-225)||(34791039-34791113)
chr4 (186-232)||(38976971-38977018)
chr4 (149-232)||(47846844-47846926)
chr4 (149-232)||(3685957-3686038)
chr4 (143-232)||(29644295-29644382)
chr4 (149-228)||(42544155-42544232)
chr4 (143-230)||(39052983-39053067)
chr4 (149-232)||(39258352-39258438)
chr4 (143-232)||(47787927-47788014)
chr4 (186-232)||(22496757-22496804)
chr4 (147-232)||(28974251-28974333)
chr4 (94-231)||(29656459-29656595)
chr4 (142-232)||(39976470-39976559)
chr4 (149-230)||(48400713-48400791)
chr4 (148-231)||(40881274-40881355)
chr4 (157-231)||(35909949-35910019)
chr4 (92-127)||(25390608-25390643)
chr4 (149-230)||(29815179-29815259)
chr4 (93-127)||(20964474-20964508)
chr4 (185-230)||(25149430-25149476)
chr4 (195-229)||(26185179-26185213)
chr4 (93-131)||(35998294-35998332)
chr4 (161-232)||(38319869-38319938)
chr4 (143-228)||(41203676-41203760)
chr4 (161-230)||(44633114-44633182)
chr4 (195-232)||(4357558-4357595)
chr4 (170-232)||(4360488-4360548)
chr4 (142-224)||(33047437-33047514)
chr4 (142-232)||(37309637-37309725)
chr4 (149-232)||(1825328-1825409)
chr4 (204-232)||(17237042-17237070)
chr4 (204-232)||(41436480-41436508)
chr4 (142-232)||(45289976-45290065)
chr4 (204-232)||(49448840-49448868)
chr4 (148-221)||(51527364-51527435)
[»] scaffold0001 (1 HSPs)
scaffold0001 (95-232)||(394672-394805)
[»] chr3 (38 HSPs)
chr3 (142-230)||(21296585-21296671)
chr3 (149-232)||(38600886-38600966)
chr3 (142-232)||(39365097-39365185)
chr3 (142-232)||(41031511-41031599)
chr3 (151-232)||(26832019-26832098)
chr3 (149-230)||(51164898-51164977)
chr3 (186-230)||(1334863-1334907)
chr3 (95-232)||(26134783-26134915)
chr3 (149-232)||(32023181-32023262)
chr3 (149-232)||(33994603-33994684)
chr3 (148-232)||(5245357-5245439)
chr3 (148-232)||(39866633-39866715)
chr3 (149-230)||(54021540-54021618)
chr3 (186-232)||(54493888-54493935)
chr3 (145-232)||(15280547-15280632)
chr3 (186-232)||(16134484-16134530)
chr3 (95-230)||(21585492-21585622)
chr3 (148-231)||(48744170-48744251)
chr3 (198-232)||(32827384-32827418)
chr3 (150-221)||(49003217-49003286)
chr3 (195-232)||(9218135-9218172)
chr3 (152-230)||(26142855-26142931)
chr3 (142-230)||(54122306-54122391)
chr3 (170-230)||(48409551-48409609)
chr3 (93-131)||(1334951-1334989)
chr3 (194-232)||(45392079-45392117)
chr3 (149-231)||(54845597-54845679)
chr3 (187-232)||(3862252-3862297)
chr3 (188-232)||(30261582-30261627)
chr3 (94-131)||(38600981-38601018)
chr3 (203-232)||(47684765-47684794)
chr3 (186-230)||(53051006-53051051)
chr3 (204-232)||(8706147-8706175)
chr3 (204-232)||(9058034-9058062)
chr3 (204-232)||(37041953-37041981)
chr3 (202-230)||(43639598-43639626)
chr3 (204-232)||(45746365-45746393)
chr3 (204-232)||(47496168-47496196)
[»] chr6 (12 HSPs)
chr6 (144-230)||(31265721-31265804)
chr6 (149-230)||(3604682-3604761)
chr6 (149-232)||(30064029-30064110)
chr6 (170-231)||(15081390-15081449)
chr6 (149-227)||(4238368-4238444)
chr6 (148-232)||(33109318-33109400)
chr6 (158-232)||(7301160-7301232)
chr6 (186-232)||(26356250-26356296)
chr6 (170-232)||(9755227-9755286)
chr6 (170-232)||(34441859-34441918)
chr6 (170-230)||(3166190-3166248)
chr6 (95-127)||(34915991-34916023)
[»] scaffold0321 (1 HSPs)
scaffold0321 (148-232)||(9629-9711)
[»] scaffold0007 (1 HSPs)
scaffold0007 (147-230)||(230201-230281)
[»] scaffold0086 (1 HSPs)
scaffold0086 (149-230)||(5765-5843)
[»] scaffold0034 (1 HSPs)
scaffold0034 (186-232)||(98806-98852)
[»] scaffold0058 (1 HSPs)
scaffold0058 (186-232)||(14436-14483)
[»] scaffold0028 (1 HSPs)
scaffold0028 (148-232)||(26553-26640)
[»] scaffold0006 (3 HSPs)
scaffold0006 (171-230)||(229791-229848)
scaffold0006 (94-127)||(98835-98868)
scaffold0006 (94-127)||(108113-108146)
[»] scaffold0155 (1 HSPs)
scaffold0155 (170-230)||(8036-8094)
[»] scaffold0578 (1 HSPs)
scaffold0578 (204-232)||(4028-4056)
[»] scaffold0221 (1 HSPs)
scaffold0221 (196-232)||(8878-8914)


Alignment Details
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 32 - 232
Target Start/End: Original strand, 33751293 - 33751488
Alignment:
Q  32 gatttttattattctttattgtgataatatttgactttctacaatcttttaggtcaaatcttatactccctccgtcccataataactgaatcattttcaa 131  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||| |||||||| |||||||||    
T  33751293 gatttttattattctttattatgataatatttgactttctccaatctttaaggtcaaatcttatactccctccgtctcatactaactgaaccattttcaa 33751392  T
Q  132 tnnnnnnnnngtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattac-tttttccctttataactctaattaatactactttca 230  Q
    |         |||||  |||||||||||||||||| | ||||||||||   |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33751393 t---aaaaaagtgtccaaaaataaatgagtcatttcacttttcaatac---atcattaattacttttttccctttataactctaattaatactactttca 33751486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 232
Target Start/End: Original strand, 41436023 - 41436106
Alignment:
Q  147 tcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttcccttt-ataactctaattaatactactttcatc 232  Q
    ||||||||| |||||||||| | |||||||||||||||   |||||||||||||||||| |||||||||||||||||||||||||||    
T  41436023 tcaaaataactgagtcatttcacttttcaatacaatat---taattactttttcccttttataactctaattaatactactttcatc 41436106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 3100339 - 3100425
Alignment:
Q  142 gtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttt-tccctttataactctaattaatactactttca 230  Q
    |||||||||||||| |||||||||| | |||||||||||||||   ||||||||||| ||||||| ||||||||||||||||||||||||    
T  3100339 gtgtctcaaaataactgagtcatttcacttttcaatacaatat---taattacttttttccctttgtaactctaattaatactactttca 3100425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 150 - 230
Target Start/End: Original strand, 33880106 - 33880183
Alignment:
Q  150 aaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttca 230  Q
    |||||| |||||||||| | |||| ||||||||||   |||||||||||||||||||||||||||||||||| ||||||||    
T  33880106 aaataattgagtcatttcactttttaatacaatat---taattactttttccctttataactctaattaatattactttca 33880183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 232
Target Start/End: Original strand, 10818517 - 10818648
Alignment:
Q  96 actccctccgtcccataataactgaatcattttcaatnnnnnnnnngtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattact 195  Q
    |||||||| ||||||||||| |||| |||||||||||         |||||||||||||| |||||||||| |||||| |||| |||||   ||||||||    
T  10818517 actccctctgtcccataatatctgagtcattttcaataaaaa----gtgtctcaaaataactgagtcatttcattttttaatataatat---taattact 10818609  T
Q  196 ttt--tccctttataactctaattaatactactttcatc 232  Q
    |||  |||||||||||||||||||||||  |||||||||    
T  10818610 ttttttccctttataactctaattaatatcactttcatc 10818648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 143 - 232
Target Start/End: Original strand, 40964993 - 40965079
Alignment:
Q  143 tgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttt-tccctttataactctaattaatactactttcatc 232  Q
    |||| |||||||| ||||| |||| |||||||||||||||||   ||||||||||| ||||||||||||||||||||||| ||||||||||    
T  40964993 tgtcccaaaataactgagttattt-atttttcaatacaatat---taattacttttttccctttataactctaattaatattactttcatc 40965079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 43077893 - 43077806
Alignment:
Q  142 gtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttcatc 232  Q
    ||||| ||||||||  ||||||||| | |||||||||||||||   |||||| ||||||| ||||||||||||||||||| ||||||||||    
T  43077893 gtgtcccaaaataacggagtcatttcacttttcaatacaatat---taattattttttccttttataactctaattaatattactttcatc 43077806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 7213414 - 7213500
Alignment:
Q  142 gtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttcccttt-ataactctaattaatactactttca 230  Q
    ||||| |||||||| | | |||||| | |||||||||||||||   |||||||||||||||||| |||||||||||||||||||||||||    
T  7213414 gtgtcccaaaataattaaatcatttcacttttcaatacaatat---taattactttttcccttttataactctaattaatactactttca 7213500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 228
Target Start/End: Complemental strand, 14284440 - 14284358
Alignment:
Q  143 tgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactacttt 228  Q
    |||| |||||||| ||||||||||||||||||||||||||   |||||||| |||||||||| || ||| ||||||||| ||||||    
T  14284440 tgtcccaaaataactgagtcattttatttttcaatacaat---attaattattttttcccttcatgactgtaattaatattacttt 14284358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 223
Target Start/End: Complemental strand, 28926010 - 28925937
Alignment:
Q  148 caaaataaatgagtcattttatttttcaatacaatatcattaattacttttt-ccctttataactctaattaatact 223  Q
    |||||||| |||| ||||| |||||||||||||||||   |||||||||||| ||||||||||||||||||||||||    
T  28926010 caaaataattgagccatttcatttttcaatacaatat---taattacttttttccctttataactctaattaatact 28925937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 230
Target Start/End: Original strand, 9724821 - 9724905
Alignment:
Q  143 tgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttca 230  Q
    |||| ||||| || |||| ||||| | |||||||||||||||   ||||||||||||  |||||||||||||||||||||||||||||    
T  9724821 tgtcccaaaaaaattgagccatttcacttttcaatacaatat---taattactttttttctttataactctaattaatactactttca 9724905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 232
Target Start/End: Complemental strand, 28108538 - 28108455
Alignment:
Q  148 caaaataaatgagtcattttatttttcaatacaatatcattaattacttttt--ccctttataactctaattaatactactttcatc 232  Q
    |||||||| |||| ||||  | ||||||||||||   |||||||||||||||  |||||||||||||||||||||||||||||||||    
T  28108538 caaaataactgagccattccacttttcaatacaa---cattaattactttttttccctttataactctaattaatactactttcatc 28108455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 28572150 - 28572233
Alignment:
Q  142 gtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttca 230  Q
    ||||| |||||||| |||||||||| | |||||||||||||   |||||||||  |||| |||||||||| ||||||||||||||||||    
T  28572150 gtgtcccaaaataactgagtcatttcacttttcaatacaat---attaattac--tttctctttataactgtaattaatactactttca 28572233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 7648992 - 7648946
Alignment:
Q  186 attaattactttttccctttataactctaattaatactactttcatc 232  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||    
T  7648992 attaattactttttccctttataattctaattaatactattttcatc 7648946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 238
Target Start/End: Complemental strand, 37248097 - 37247958
Alignment:
Q  95 tactccctccgtcccataataactgaatcattttcaatnnnnnnnnngtgtctcaaaataaatgagtcattttatttttcaataca-atatcattaatta 193  Q
    |||||||||||||| ||||||| ||| |||||||||||         || || |||||||| |||||| ||| | ||||||||||| || | |||||||     
T  37248097 tactccctccgtccaataataattgagtcattttcaataaaaaaa--gtatcccaaaataagtgagtcgtttcacttttcaatacatatttaattaatt- 37248001  T
Q  194 ctttttccctttataactctaattaatactactttcatctcactc 238  Q
      |||||||||||||||||||||||||| |||||||||| |||||    
T  37248000 --ttttccctttataactctaattaatattactttcatcacactc 37247958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 44534654 - 44534565
Alignment:
Q  143 tgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttc-----cctttataactctaattaatactactttca 230  Q
    ||||||||||||| |||||||||| | |||||||||||||   |||||||||||||||     | |||||||||||||||||||||| |||||    
T  44534654 tgtctcaaaataactgagtcatttcacttttcaatacaat---attaattactttttctttttcttttataactctaattaatactaatttca 44534565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 230
Target Start/End: Complemental strand, 15859500 - 15859424
Alignment:
Q  152 ataaatgagtcattttatttttcaatacaatatcattaattacttttt-ccctttataactctaattaatactactttca 230  Q
    |||| |||||||||| | |||||||||||||||   |||||||||||| |||||||||||||||||||| | ||||||||    
T  15859500 ataattgagtcatttcacttttcaatacaatat---taattacttttttccctttataactctaattaacattactttca 15859424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 3123585 - 3123670
Alignment:
Q  145 tctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttcatc 232  Q
    ||||||||||| |||||||||| | ||| ||||||||||| | | |||| ||||  ||||||||||||||||||||| || |||||||    
T  3123585 tctcaaaataactgagtcatttcactttccaatacaatattaattattattttt--cctttataactctaattaatattattttcatc 3123670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 28301384 - 28301461
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttcatc 232  Q
    |||||||||||||||||| | |||| |||   |||| ||||||   ||||||| ||||||||||||||||||||||||||||||    
T  28301384 aaaataaatgagtcatttcactttttaat---atattattaat---tttttccttttataactctaattaatactactttcatc 28301461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 8031707 - 8031764
Alignment:
Q  169 tttttcaatacaatatcattaattactttttc-cctttataactctaattaatactacttt 228  Q
    ||||||||||||||||   ||||||||||||| ||||||||||| ||||||||||||||||    
T  8031707 tttttcaatacaatat---taattactttttctcctttataactttaattaatactacttt 8031764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 30757708 - 30757648
Alignment:
Q  170 ttttcaatacaatatcattaattactttttcccttt-ataactctaattaatactactttcatc 232  Q
    |||||||||||||||   ||||||||||||  |||| |||||||||||||||||||||||||||    
T  30757708 ttttcaatacaatat---taattactttttttcttttataactctaattaatactactttcatc 30757648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 44194598 - 44194678
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttcatc 232  Q
    ||||||| ||| |||||| | |||||||||||||||   |||||| ||||||| ||||||||||||||| |||| | |||||||    
T  44194598 aaaataactgaatcatttcacttttcaatacaatat---taattattttttccttttataactctaatttataccaatttcatc 44194678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 230
Target Start/End: Complemental strand, 5212119 - 5212040
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttttc-cctttataactctaattaatactactttca 230  Q
    ||||||| ||||| |||| | |||||||||||||||   ||||||||||||  ||||||||| | ||||||||||||||||||    
T  5212119 aaaataactgagttatttcacttttcaatacaatat---taattactttttttcctttataaatttaattaatactactttca 5212040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 232
Target Start/End: Complemental strand, 42881440 - 42881357
Alignment:
Q  147 tcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttcccttt-ataactctaattaatactactttcatc 232  Q
    ||||||||| ||| |||||| | |||||||||||||||   |||||||||||| ||||| | ||||||| ||||||||||| |||||    
T  42881440 tcaaaataactgaatcatttcacttttcaatacaatat---taattacttttttccttttacaactctacttaatactactctcatc 42881357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 4794537 - 4794600
Alignment:
Q  170 ttttcaatacaatatca-ttaattactttttccctttataactctaattaatactactttcatc 232  Q
    ||||||||||||||| | ||||||  ||| |||  |||||||||||||||||||||||||||||    
T  4794537 ttttcaatacaatattaattaatttttttctccaattataactctaattaatactactttcatc 4794600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 19515841 - 19515907
Alignment:
Q  163 attttatttttcaatacaatatcattaattactttttccct-ttataactctaattaatactactttcat 231  Q
    |||| |||||||| ||||||||||   |||||||||| ||  ||||||||||||||||||||||||||||    
T  19515841 atttcatttttcagtacaatatca---attactttttaccaattataactctaattaatactactttcat 19515907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 232
Target Start/End: Complemental strand, 24775968 - 24775888
Alignment:
Q  150 aaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttcatc 232  Q
    |||||| |||||||| | | ||||||||| |||   |||||| | ||||| ||||||||||||| ||||||||||||||||||    
T  24775968 aaataattgagtcatatcacttttcaatataatt--attaatcatttttttcctttataactctgattaatactactttcatc 24775888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 7650136 - 7650063
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttttcccttt-ataactctaattaatacta 224  Q
    ||||||| ||| |||||| | |||| ||||||||||   |||||||||||| ||||| |||||||||||||||||||    
T  7650136 aaaataactgaatcatttcacttttaaatacaatat---taattacttttttccttttataactctaattaatacta 7650063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 127
Target Start/End: Complemental strand, 20696995 - 20696961
Alignment:
Q  93 tatactccctccgtcccataataactgaatcattt 127  Q
    |||||||||||||||||||||||||||| ||||||    
T  20696995 tatactccctccgtcccataataactgagtcattt 20696961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 6075488 - 6075525
Alignment:
Q  195 tttttccctttataactctaattaatactactttcatc 232  Q
    |||||||  |||||||||||||||||||||||||||||    
T  6075488 tttttccaattataactctaattaatactactttcatc 6075525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 13375641 - 13375600
Alignment:
Q  143 tgtctcaaaataaatgagtcattttatttttcaatacaatat 184  Q
    ||||||||||||| |||||||||| | |||||||||||||||    
T  13375641 tgtctcaaaataactgagtcatttcacttttcaatacaatat 13375600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 232
Target Start/End: Original strand, 23684957 - 23684986
Alignment:
Q  203 tttataactctaattaatactactttcatc 232  Q
    ||||||||||||||||||||||||||||||    
T  23684957 tttataactctaattaatactactttcatc 23684986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 232
Target Start/End: Complemental strand, 5007650 - 5007622
Alignment:
Q  204 ttataactctaattaatactactttcatc 232  Q
    |||||||||||||||||||||||||||||    
T  5007650 ttataactctaattaatactactttcatc 5007622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 10394459 - 10394423
Alignment:
Q  93 tatactccctccgtcccataataactgaatcattttc 129  Q
    ||||||||||||||||||||||||||||  |||||||    
T  10394459 tatactccctccgtcccataataactgagccattttc 10394423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 44284466 - 44284399
Alignment:
Q  163 attttatttttcaatacaatatcattaattacttt-ttccctttataactctaattaatactactttcatc 232  Q
    ||||||||||||||| ||||||   |||||| ||| || | ||||||||||||||||||| ||||||||||    
T  44284466 attttatttttcaatgcaatat---taattattttatttcatttataactctaattaataatactttcatc 44284399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 232
Target Start/End: Complemental strand, 44424371 - 44424343
Alignment:
Q  204 ttataactctaattaatactactttcatc 232  Q
    |||||||||||||||||||||||||||||    
T  44424371 ttataactctaattaatactactttcatc 44424343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 95 - 232
Target Start/End: Complemental strand, 2846888 - 2846756
Alignment:
Q  95 tactccctccgtcccataataactgaatcattttcaatnnnnnnnnngtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattac 194  Q
    |||||||||||||||||||||||||| |||||||||||         ||||| |||||||| |||||||||| | |||||||||||   |||||||||||    
T  2846888 tactccctccgtcccataataactgagtcattttcaataaaaaa---gtgtcccaaaataagtgagtcatttcacttttcaataca---tcattaattac 2846795  T
Q  195 tttttcccttt-ataactctaattaatactactttcatc 232  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  2846794 ttttttccttttataactctaattaatactactttcatc 2846756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 92 - 232
Target Start/End: Original strand, 33584454 - 33584590
Alignment:
Q  92 ttatactccctccgtcccataataactgaatcattttcaatnnnnnnnnngtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaat 191  Q
    |||||||||||||||||||||||||||||  ||||||||||         |||||||||||||| |||| ||||| | |||| ||||||   ||||||||    
T  33584454 ttatactccctccgtcccataataactgaggcattttcaataaaaaaa--gtgtctcaaaataactgagccatttcacttttgaataca---tcattaat 33584548  T
Q  192 tactttt-tccctttataactctaattaatactactttcatc 232  Q
    ||||||| ||||||||||||| ||||||||||||||||||||    
T  33584549 tacttttttccctttataactataattaatactactttcatc 33584590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 143 - 230
Target Start/End: Original strand, 12308319 - 12308403
Alignment:
Q  143 tgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttca 230  Q
    ||||||||||||| |||||||||| | |||||||||||||||   |||||||||||| | ||||||||||||||||||| ||||||||    
T  12308319 tgtctcaaaataactgagtcatttcaattttcaatacaatat---taattacttttttcatttataactctaattaatattactttca 12308403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 150 - 232
Target Start/End: Complemental strand, 40038270 - 40038191
Alignment:
Q  150 aaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttcatc 232  Q
    |||||| |||||||||| | |||||||||   |||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  40038270 aaataagtgagtcatttcacttttcaata---tatcattaattatttttttcctttataactctaattaatactactttcatc 40038191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 149 - 232
Target Start/End: Complemental strand, 31581604 - 31581523
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttttccc-tttataactctaattaatactactttcatc 232  Q
    ||||||| |||||||||| | |||||||||||||||   |||||||||||| || ||||||||||||||||||||||||||||||    
T  31581604 aaaataactgagtcatttcacttttcaatacaatat---taattacttttttccatttataactctaattaatactactttcatc 31581523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 29434748 - 29434660
Alignment:
Q  142 gtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttccc-tttataactctaattaatactactttcatc 232  Q
    |||||||||||||| ||||||||||   ||| |||||||||||   |||||| |||||||| ||||||||||||||||||||||||||||||    
T  29434748 gtgtctcaaaataactgagtcatttcgctttccaatacaatat---taattattttttcccctttataactctaattaatactactttcatc 29434660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 95 - 232
Target Start/End: Original strand, 29257442 - 29257574
Alignment:
Q  95 tactccctccgtcccataataactgaatcattttcaatnnnnnnnnngtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattac 194  Q
    |||||| |||||| |||||||||||| |||||||||||         ||||| |||||||| ||||  |||| | |||||||||||   |||||||||||    
T  29257442 tactccatccgtctcataataactgagtcattttcaataaaaaa---gtgtcccaaaataagtgagctatttcacttttcaataca---tcattaattac 29257535  T
Q  195 tttt-tccctttataactctaattaatactactttcatc 232  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  29257536 ttttttccctttataactctaattaatattactttcatc 29257574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 143 - 232
Target Start/End: Complemental strand, 34963978 - 34963891
Alignment:
Q  143 tgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattacttttt-ccctttataactctaattaatactactttcatc 232  Q
    |||| |||||||| |||||||||| | ||||||||||| |||   |||||||||||| |||||||||||||||||||||| ||||||||||    
T  34963978 tgtcccaaaataactgagtcatttcacttttcaatacagtat---taattacttttttccctttataactctaattaatattactttcatc 34963891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 39693730 - 39693809
Alignment:
Q  142 gtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttt-tccctttataactctaattaatact 223  Q
    ||||| |||||||| |||||||||| | |||||||||||   ||||||||||||||| |||||||||||||||||||||||||    
T  39693730 gtgtcccaaaataagtgagtcatttcacttttcaataca---tcattaattacttttttccctttataactctaattaatact 39693809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 11616500 - 11616586
Alignment:
Q  142 gtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttt-tccctttataactctaattaatactactttca 230  Q
    ||||| |||||||| |||| ||||| | |||||||||||||||   ||||||||||| |||||||||||||||||||||||| |||||||    
T  11616500 gtgtcccaaaataactgagccatttcacttttcaatacaatat---taattacttttttccctttataactctaattaatacaactttca 11616586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 230
Target Start/End: Complemental strand, 38182036 - 38181956
Alignment:
Q  148 caaaataaatgagtcattttatttttcaatacaatatcattaattactt-tttccctttataactctaattaatactactttca 230  Q
    |||||||| |||||||||||| ||||||||| |||||   |||||| || |||| |||||||||||||||||||||||||||||    
T  38182036 caaaataactgagtcattttacttttcaataaaatat---taattatttctttctctttataactctaattaatactactttca 38181956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 44604645 - 44604557
Alignment:
Q  142 gtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattac-tttttccctttataactctaattaatactactttcatc 232  Q
    ||||| |||||||| |||| ||||| | |||||||||||   ||||||||||  ||||||| ||||||||||||||||||||||||||||||    
T  44604645 gtgtcccaaaataagtgagccatttcacttttcaataca---tcattaattatgtttttccttttataactctaattaatactactttcatc 44604557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 230
Target Start/End: Complemental strand, 33774203 - 33774125
Alignment:
Q  148 caaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttca 230  Q
    |||||||| |||||||||| | |||||||||||||||   |||||| ||||||| ||||||| ||||||||||||||||||||    
T  33774203 caaaataactgagtcatttcacttttcaatacaatat---taattattttttcc-tttataattctaattaatactactttca 33774125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 228
Target Start/End: Complemental strand, 40590992 - 40590909
Alignment:
Q  143 tgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttcccttt-ataactctaattaatactacttt 228  Q
    |||| |||||||| |||||||||| | |||| ||||||||||   |||||||||||| ||||| |||||||||||||||||||||||    
T  40590992 tgtcccaaaataactgagtcatttcacttttaaatacaatat---taattacttttttccttttataactctaattaatactacttt 40590909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 231
Target Start/End: Complemental strand, 46288598 - 46288512
Alignment:
Q  143 tgtctcaaaataaatgagtcattttatttttcaatacaatatca-ttaattactttttccctttataactctaattaatactactttcat 231  Q
    |||| |||||||| |||| ||||| | ||||||||| ||||| | ||||||   ||||||||||||||||||||||||||||||||||||    
T  46288598 tgtcccaaaataactgagccatttcacttttcaatataatattaattaatt---ttttccctttataactctaattaatactactttcat 46288512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 14649068 - 14648999
Alignment:
Q  163 attttatttttcaatacaatatcattaattactttttccct-ttataactctaattaatactactttcatc 232  Q
    |||||| ||||||||||||||| |||||||||||||| ||  |||||||||||||||||| ||||||||||    
T  14649068 attttacttttcaatacaatat-attaattacttttttccaattataactctaattaatattactttcatc 14648999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 228
Target Start/End: Original strand, 23703861 - 23703939
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttttccc-tttataactctaattaatactacttt 228  Q
    ||||||| ||| |||||||| ||| |||||||||   |||||||||||||| || ||||||||||||||||||||||||||    
T  23703861 aaaataactgaatcattttactttccaatacaatt--attaattacttttttccatttataactctaattaatactacttt 23703939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 7426047 - 7425960
Alignment:
Q  142 gtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattac-tttttccctt-tataactctaattaatactactttca 230  Q
    ||||| |||||||| |||| ||||| | |||||||||||||   ||||||||| |||||||||| |||||||||| |||||||||||||||    
T  7426047 gtgtcccaaaataactgagccatttcacttttcaatacaat---attaattacttttttcccttatataactctagttaatactactttca 7425960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 45891004 - 45890917
Alignment:
Q  142 gtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttcatc 232  Q
    ||||| |||||||| ||||  |||| | ||||||||||||||    |||||| ||||||||||||||||| ||||||||| ||||||||||    
T  45891004 gtgtcacaaaataactgagcaatttcacttttcaatacaataa---taattattttttccctttataactataattaatattactttcatc 45890917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 47453950 - 47454031
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttcatc 232  Q
    ||||||| |||| ||||| | ||||||||||||||| | | |||  ||||||||||||||||| |||||| |||||||||||||    
T  47453950 aaaataattgagccatttcacttttcaatacaatattaatcatt--tttttccctttataactataattattactactttcatc 47454031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 8149917 - 8149986
Alignment:
Q  161 tcattttatttttcaatacaatatcattaattactttttccct-ttataactctaattaatactactttcatc 232  Q
    |||||| |||||||||||||||||   |||||||||||| ||  |||||||||||||||||| ||||||||||    
T  8149917 tcatttcatttttcaatacaatat---taattacttttttccaattataactctaattaatattactttcatc 8149986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 30462962 - 30463043
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttttcccttt-ataactctaattaatactactttcatc 232  Q
    ||||||| |||||||||| | ||||| |||||||||   |||| ||||||| ||||| |||||||||||||||| ||||||||||    
T  30462962 aaaataattgagtcatttcacttttccatacaatat---taatgacttttttccttttataactctaattaatattactttcatc 30463043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 36117619 - 36117688
Alignment:
Q  160 gtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttcatc 232  Q
    ||||||| | |||||||||||||||   |||||| ||||||||||||||||| |||||||||  |||||||||    
T  36117619 gtcatttcacttttcaatacaatat---taattattttttccctttataactttaattaatatcactttcatc 36117688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 229
Target Start/End: Complemental strand, 5724874 - 5724790
Alignment:
Q  143 tgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttcccttt-ataactctaattaatactactttc 229  Q
    |||| |||||||| |||| ||||| | |||||||||||||||   |||| |||||||  |||| ||||||||||||||||||||||||    
T  5724874 tgtcccaaaataagtgagccatttcacttttcaatacaatat---taatcactttttttcttttataactctaattaatactactttc 5724790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 49100961 - 49100921
Alignment:
Q  143 tgtctcaaaataaatgagtcattttatttttcaatacaata 183  Q
    ||||||||||||| |||||||||||| ||||||||||||||    
T  49100961 tgtctcaaaataattgagtcattttacttttcaatacaata 49100921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 30659620 - 30659562
Alignment:
Q  170 ttttcaatacaatatcattaattactttttccct-ttataactctaattaatactactttca 230  Q
    ||||||||||||   ||||||||||||||| ||  |||||||||||||||||||||||||||    
T  30659620 ttttcaatacaa---cattaattacttttttccaattataactctaattaatactactttca 30659562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 37264280 - 37264338
Alignment:
Q  170 ttttcaatacaatatcattaattactttttccct-ttataactctaattaatactactttca 230  Q
    |||||||||||||||   ||||||||||||||   |||||||||||||||||||||||||||    
T  37264280 ttttcaatacaatat---taattactttttcctaattataactctaattaatactactttca 37264338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 127
Target Start/End: Complemental strand, 37496612 - 37496577
Alignment:
Q  92 ttatactccctccgtcccataataactgaatcattt 127  Q
    ||||||||||||||||||||||||||||| ||||||    
T  37496612 ttatactccctccgtcccataataactgagtcattt 37496577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 228
Target Start/End: Complemental strand, 46095610 - 46095532
Alignment:
Q  148 caaaataaatgagtcattttatttttcaatacaatatca-ttaattactttttccctttataactctaattaatactacttt 228  Q
    ||||||||  ||||||||| | ||||||||||||||| | ||||||   |||||  ||||||||||||||||||||||||||    
T  46095610 caaaataaccgagtcatttcacttttcaatacaatattaattaatt---ttttcattttataactctaattaatactacttt 46095532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 47238185 - 47238242
Alignment:
Q  170 ttttcaatacaatatcattaattactttttccctttataactctaattaatactactttca 230  Q
    |||||||||||||||   ||||||| ||||||  ||||||| |||||||||||||||||||    
T  47238185 ttttcaatacaatat---taattaccttttccaattataacactaattaatactactttca 47238242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 127
Target Start/End: Original strand, 18234799 - 18234832
Alignment:
Q  94 atactccctccgtcccataataactgaatcattt 127  Q
    ||||||||||||||| ||||||||||||||||||    
T  18234799 atactccctccgtcctataataactgaatcattt 18234832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 37157117 - 37157197
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttcatc 232  Q
    ||||||| ||||  |||| | |||||||||||||||   |||||| ||||| | |||||||||||||||||||||  |||||||    
T  37157117 aaaataactgagctatttcacttttcaatacaatat---taattatttttttcttttataactctaattaatacttttttcatc 37157197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 232
Target Start/End: Original strand, 25778743 - 25778771
Alignment:
Q  204 ttataactctaattaatactactttcatc 232  Q
    |||||||||||||||||||||||||||||    
T  25778743 ttataactctaattaatactactttcatc 25778771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 232
Target Start/End: Complemental strand, 37496525 - 37496477
Alignment:
Q  185 cattaattactttttccct-ttataactctaattaatactactttcatc 232  Q
    ||||||||||||||| ||  |||||||| ||||||||||||||||||||    
T  37496525 cattaattacttttttccaattataactttaattaatactactttcatc 37496477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 94 - 232
Target Start/End: Original strand, 3725081 - 3725213
Alignment:
Q  94 atactccctccgtcccataataactgaatcattttcaatnnnnnnnnngtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaatta 193  Q
    |||||||||||||||||||||||||||||||||| ||||         |||||  ||||||| |||||||||| | |||||||||||||||   |||||     
T  3725081 atactccctccgtcccataataactgaatcatttgcaataaaaaa---gtgtcctaaaataactgagtcatttcacttttcaatacaatat---taattt 3725174  T
Q  194 ctttttccctttataactctaattaatactactttcatc 232  Q
     ||||||||||||||||||||||||||| ||||||||||    
T  3725175 ttttttccctttataactctaattaatattactttcatc 3725213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 13716952 - 13717037
Alignment:
Q  145 tctcaaaataaatgagtcattttatttttcaatacaatatcattaattac-tttttccctttataactctaattaatactactttcatc 232  Q
    ||||||||||| ||||||||||||||||||||||||||   ||||||||| ||||||||||||||||||||||||||| || |||||||    
T  13716952 tctcaaaataactgagtcattttatttttcaatacaat---attaattacttttttccctttataactctaattaatattattttcatc 13717037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 17243084 - 17243035
Alignment:
Q  183 atcattaattactttttccctttataactctaattaatactactttcatc 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17243084 atcattaattactttttccctttataactctaattaatactactttcatc 17243035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 94 - 232
Target Start/End: Complemental strand, 35334742 - 35334607
Alignment:
Q  94 atactccctccgtcccataataactgaatcattttcaatnnnnnnnnngtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaatta 193  Q
    |||||| |||||||||||||||||||| |||||||||||         ||||| |||||||| |||| ||||| | |||||||||||   ||||||||||    
T  35334742 atactctctccgtcccataataactgagtcattttcaataaaaaaaa-gtgtcccaaaataagtgagccatttcacttttcaataca---tcattaatta 35334647  T
Q  194 ctttttcccttt-ataactctaattaatactactttcatc 232  Q
     ||||| ||||| |||||||||||||||||||||||||||    
T  35334646 tttttttccttttataactctaattaatactactttcatc 35334607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 143 - 232
Target Start/End: Complemental strand, 11099645 - 11099558
Alignment:
Q  143 tgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttccc-tttataactctaattaatactactttcatc 232  Q
    |||| |||||||| |||||||||| | ||| |||||||||||   ||||||||||||||| ||||||||||||||||||||||||||||||    
T  11099645 tgtcccaaaataactgagtcatttcactttccaatacaatat---taattactttttcccctttataactctaattaatactactttcatc 11099558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 143 - 232
Target Start/End: Original strand, 15814603 - 15814688
Alignment:
Q  143 tgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttcatc 232  Q
    ||||||||||||| |||||||||| | |||||||||||||||   |||||| ||||| | ||||||||||||||||||||||||||||||    
T  15814603 tgtctcaaaataactgagtcatttcacttttcaatacaatat---taattatttttttc-tttataactctaattaatactactttcatc 15814688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 35646258 - 35646172
Alignment:
Q  142 gtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttcccttt-ataactctaattaatactactttca 230  Q
    ||||||||| |||| |||||||||| | |||||||||| ||||   |||||||||||| ||||| |||||||||||||||||||||||||    
T  35646258 gtgtctcaatataactgagtcatttcacttttcaatacgatat---taattacttttttccttttataactctaattaatactactttca 35646172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 4412329 - 4412410
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttt-tccctttataactctaattaatactactttcatc 232  Q
    ||||||| | |||||||| | |||||||||||||||   ||||||||||| |||||||||||||||||||||||||| |||||||    
T  4412329 aaaataactaagtcatttcacttttcaatacaatat---taattacttttttccctttataactctaattaatactattttcatc 4412410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 230
Target Start/End: Original strand, 39008075 - 39008154
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttca 230  Q
    ||||||| | |||||||| | ||||||||||||||| | | |||  ||||||||||||||||||||||||||||||||||||    
T  39008075 aaaataactaagtcatttcacttttcaatacaatattaattatt--tttttccctttataactctaattaatactactttca 39008154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 230
Target Start/End: Complemental strand, 8692981 - 8692901
Alignment:
Q  148 caaaataaatgagtcattttatttttcaatacaatatcattaattactttttc-cctttataactctaattaatactactttca 230  Q
    ||||||||  ||||||||| |||||||||||||||||   ||||||||||||  ||||||||||||||||||||| ||||||||    
T  8692981 caaaataaccgagtcatttcatttttcaatacaatat---taattactttttttcctttataactctaattaatattactttca 8692901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 39183776 - 39183708
Alignment:
Q  161 tcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttcatc 232  Q
    ||||||||||||||||||||||||   |||||||||||| |  |||||||||||||||||| ||||||||||    
T  39183776 tcattttatttttcaatacaatat---taattacttttttcaattataactctaattaatattactttcatc 39183708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 8369866 - 8369779
Alignment:
Q  142 gtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttca 230  Q
    ||||| |||||||| |||| ||||| ||||||||||||||||| | | |||  ||||||  ||||||||||||||||||||||||||||    
T  8369866 gtgtcccaaaataactgagccatttcatttttcaatacaatattaattatttttttttct-tttataactctaattaatactactttca 8369779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 41184062 - 41184144
Alignment:
Q  148 caaaataaatgagtcattttatttttcaatacaatatcattaattac-tttttccctttataactctaattaatactactttcatc 232  Q
    |||||||| ||||| |||||| |||||||||||||||   ||||||| ||||| | ||||||||||||||||||| ||||||||||    
T  41184062 caaaataactgagtgattttacttttcaatacaatat---taattacattttttcatttataactctaattaatattactttcatc 41184144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 42575807 - 42575721
Alignment:
Q  142 gtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattacttttt-ccctttataactctaattaatactactttca 230  Q
    ||||| ||||||||  ||| ||||| | |||||||||||||||   |||||||||||| |||||||||||| ||||||||||||||||||    
T  42575807 gtgtcccaaaataaccgagccatttcacttttcaatacaatat---taattacttttttccctttataactttaattaatactactttca 42575721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 858281 - 858362
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttttc-cctttataactctaattaatactactttcatc 232  Q
    |||||||  ||||||||| |  ||||||||||||||   ||||||||||||  ||||||||||||||||||||||||||||||||    
T  858281 aaaataaccgagtcatttcacatttcaatacaatat---taattacttttttacctttataactctaattaatactactttcatc 858362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 20189846 - 20189919
Alignment:
Q  157 tgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttcatc 232  Q
    |||||||||| | |||| |||||||||| | | |||  ||||||||||||||||||||||||||| ||||||||||    
T  20189846 tgagtcatttcactttttaatacaatattaattatt--tttttccctttataactctaattaatattactttcatc 20189919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 232
Target Start/End: Original strand, 6610730 - 6610864
Alignment:
Q  95 tactccctccgtcccataataactgaatcattttcaatnnnnnnnnngtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattac 194  Q
    |||||||||||||||||||||||||| ||||||||||            ||| |||||||| |||||||||| | |||| |||||||||| | | | |      
T  6610730 tactccctccgtcccataataactgagtcattttcaaaaaaaaaaa---gtcccaaaataactgagtcatttcacttttaaatacaatattaattacttt 6610826  T
Q  195 tttttccctttataactctaattaatactactttcatc 232  Q
    |||||| |||||||||| ||||||||| ||||||||||    
T  6610827 tttttctctttataactttaattaatattactttcatc 6610864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 95 - 230
Target Start/End: Complemental strand, 4044690 - 4044560
Alignment:
Q  95 tactccctccgtcccataataactgaatcattttcaatnnnnnnnnngtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattac 194  Q
    |||||||||||||||||||||||||| |||||| |||           |||| |||||||| ||| |||||| | |||||||||||||||   |||||||    
T  4044690 tactccctccgtcccataataactgagtcatttgcaaaataaaaaa--tgtcccaaaataattgaatcatttcacttttcaatacaatat---taattac 4044596  T
Q  195 tttttccctttataactctaattaatactactttca 230  Q
    ||||| ||||||||| | ||||||||| || |||||    
T  4044595 ttttttcctttataaatttaattaataatattttca 4044560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 230
Target Start/End: Complemental strand, 22583032 - 22582954
Alignment:
Q  150 aaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttca 230  Q
    |||||| ||||| |||| | ||||||||||||||| | | |||  ||||||  ||||||||||||||||||||||||||||    
T  22583032 aaataactgagttatttcaattttcaatacaatattaattatttttttttc--tttataactctaattaatactactttca 22582954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 33988177 - 33988226
Alignment:
Q  183 atcattaattactt-tttccctttataactctaattaatactactttcat 231  Q
    |||||||||||||| ||||||||||||||||||||| ||| |||||||||    
T  33988177 atcattaattacttgtttccctttataactctaattcatattactttcat 33988226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 13135699 - 13135780
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttcatc 232  Q
    |||||||  ||||||||| | |||||||||||||||  | |||   ||||||||||||||||| |||||| |||||||||||||    
T  13135699 aaaataatcgagtcatttcacttttcaatacaatat--taaatatttttttccctttataactttaattactactactttcatc 13135780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 231
Target Start/End: Original strand, 14259611 - 14259693
Alignment:
Q  147 tcaaaataaatgagtcattttatttttcaatacaatatcattaattac-tttttccctttataactctaattaatactactttcat 231  Q
    ||||||||| ||| |||||| ||||||||||| |||   ||||||||| ||||||| ||||||| ||||||||||| || ||||||    
T  14259611 tcaaaataactgattcatttcatttttcaatataat---attaattacttttttccttttataattctaattaatattaatttcat 14259693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 25814310 - 25814391
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattac-tttttccctttataactctaattaatactactttcatc 232  Q
    ||||||| ||| |||||| | |||||||||||||   ||||||||| ||||||| ||||||||| ||||||||| |||| |||||    
T  25814310 aaaataactgaatcatttcacttttcaatacaat---attaattacttttttccttttataactttaattaatattactctcatc 25814391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 39060629 - 39060591
Alignment:
Q  94 atactccctccgtcccataataactgaatcattttcaat 132  Q
    ||||||||||||||||||||||| ||| |||||||||||    
T  39060629 atactccctccgtcccataataattgagtcattttcaat 39060591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 72231 - 72186
Alignment:
Q  188 taattactttttccct-ttataactctaattaatactactttcatc 232  Q
    |||||||||||||||  |||||| ||||||||||||||||||||||    
T  72231 taattactttttcccaattataaatctaattaatactactttcatc 72186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 232
Target Start/End: Complemental strand, 39212660 - 39212632
Alignment:
Q  204 ttataactctaattaatactactttcatc 232  Q
    |||||||||||||||||||||||||||||    
T  39212660 ttataactctaattaatactactttcatc 39212632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 120
Target Start/End: Original strand, 43525372 - 43525400
Alignment:
Q  92 ttatactccctccgtcccataataactga 120  Q
    |||||||||||||||||||||||||||||    
T  43525372 ttatactccctccgtcccataataactga 43525400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 47)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 95 - 232
Target Start/End: Original strand, 46495913 - 46496045
Alignment:
Q  95 tactccctccgtcccataataactgaatcattttcaatnnnnnnnnngtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattac 194  Q
    |||||| ||| || ||||||||||||||||||||||||         |||||||||||||| |||||||||| |||||||||||||   ||||||||||     
T  46495913 tactccgtccatctcataataactgaatcattttcaataaaaaa---gtgtctcaaaataagtgagtcatttcatttttcaataca---tcattaattat 46496006  T
Q  195 tttttc-cctttataactctaattaatactactttcatc 232  Q
    |||||  ||||||||||||||||||||||||||||||||    
T  46496007 tttttttcctttataactctaattaatactactttcatc 46496045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 8327656 - 8327744
Alignment:
Q  142 gtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttt-tccctttataactctaattaatactactttcatc 232  Q
    ||||| ||||||||||||| ||||| | |||||||||||   ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8327656 gtgtcccaaaataaatgagccatttcacttttcaataca---tcattaattacttttttccctttataactctaattaatactactttcatc 8327744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 95 - 232
Target Start/End: Complemental strand, 45889464 - 45889329
Alignment:
Q  95 tactccctccgtcccataataactgaatcattttcaatnnnnnnnnngtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattac 194  Q
    ||||||||| |||||||||||||||| ||||||| |||         ||||| |||||||| |||||||||| | ||||||||||    |||||||||||    
T  45889464 tactccctcggtcccataataactgagtcatttttaataaaaaaaaagtgtcccaaaataagtgagtcatttcacttttcaatacg---tcattaattac 45889368  T
Q  195 tttttcccttt-ataactctaattaatactactttcatc 232  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  45889367 ttttttccttttataactctaattaatactactttcatc 45889329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 46536279 - 46536367
Alignment:
Q  142 gtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattac-tttttccctttataactctaattaatactactttcatc 232  Q
    |||||||||||||| |||||||||| | |||||||||||||||   ||||||| ||||||||| ||||||||||||||||||||||||||||    
T  46536279 gtgtctcaaaataactgagtcatttcacttttcaatacaatat---taattacatttttccctctataactctaattaatactactttcatc 46536367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 232
Target Start/End: Original strand, 38664296 - 38664428
Alignment:
Q  98 tccctccgtcccataataactgaatcattttcaatnnnnnnnnngtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattacttt 197  Q
    ||||||| ||||||| ||||||| ||||||| |||         |||||||||||||| ||||||||||||||||| |||||||||| | | |||  |||    
T  38664296 tccctccctcccatactaactgagtcatttttaataaaaaaaaagtgtctcaaaataattgagtcattttattttttaatacaatattaattatt--ttt 38664393  T
Q  198 ttccctttataactctaattaatactactttcatc 232  Q
    |||  ||||||||||||||||||||||||||||||    
T  38664394 ttctttttataactctaattaatactactttcatc 38664428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 148 - 232
Target Start/End: Complemental strand, 19533082 - 19533000
Alignment:
Q  148 caaaataaatgagtcattttatttttcaatacaatatcattaattacttttt-ccctttataactctaattaatactactttcatc 232  Q
    |||||||| |||||||||||| |||||||||||||||   |||||||||||| |||||||||||| ||||||||||||||||||||    
T  19533082 caaaataactgagtcattttacttttcaatacaatat---taattacttttttccctttataactttaattaatactactttcatc 19533000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 28839285 - 28839366
Alignment:
Q  148 caaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttcatc 232  Q
    |||||||| |||||||||| | ||||||||||| |||  ||||||||||||||||||||||||| ||||||||||||||||||||    
T  28839285 caaaataagtgagtcatttcacttttcaataca-tat--ttaattactttttccctttataactataattaatactactttcatc 28839366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 100 - 233
Target Start/End: Complemental strand, 3555762 - 3555635
Alignment:
Q  100 cctccgtcccataataactgaatcattttcaatnnnnnnnnngtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattacttttt 199  Q
    ||||||||||||||||||||| ||||||| |||         ||||| |||||||| ||||| |||| |||||||| ||||   ||||||||||||||||    
T  3555762 cctccgtcccataataactgagtcatttttaataaaaa----gtgtcccaaaataagtgagttatttcatttttcattaca---tcattaattacttttt 3555670  T
Q  200 cccttt-ataactctaattaatactactttcatct 233  Q
     ||||| ||||||||||||||||||||||||||||    
T  3555669 tccttttataactctaattaatactactttcatct 3555635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 151 - 228
Target Start/End: Complemental strand, 7785433 - 7785359
Alignment:
Q  151 aataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactacttt 228  Q
    ||||| |||||||||| | |||||||||||||||   |||||| ||||||||||||||||||||||||||||||||||    
T  7785433 aataactgagtcatttcacttttcaatacaatat---taattattttttccctttataactctaattaatactacttt 7785359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 27698758 - 27698839
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttt-tccctttataactctaattaatactactttcatc 232  Q
    ||||||| |||||||||| | |||||||||||||||   ||||||||||| ||||||||||||||||||||||| ||||||||||    
T  27698758 aaaataattgagtcatttcacttttcaatacaatat---taattacttttttccctttataactctaattaatattactttcatc 27698839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 149 - 232
Target Start/End: Complemental strand, 51749345 - 51749264
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattacttttt-ccctttataactctaattaatactactttcatc 232  Q
    ||||||| |||||||||| |||||||||||   |||||||||||| ||||| |||||||||||||||||||||| ||||||||||    
T  51749345 aaaataagtgagtcatttcatttttcaata---tatcattaattatttttttccctttataactctaattaatattactttcatc 51749264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 2219615 - 2219531
Alignment:
Q  143 tgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttca 230  Q
    |||| |||||||| |||  ||||| | |||||||||||||||   |||||||||||||||||||||||||||||||||||||| ||||    
T  2219615 tgtcccaaaataattgaaccatttcacttttcaatacaatat---taattactttttccctttataactctaattaatactacgttca 2219531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 43895787 - 43895863
Alignment:
Q  143 tgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttcc-ctttataactctaattaata 221  Q
    |||||||||||||||||||||||| | |||||||||||||   |||||||||||||||| ||||| ||||||||||||||    
T  43895787 tgtctcaaaataaatgagtcatttcacttttcaatacaat---attaattactttttcctctttacaactctaattaata 43895863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 49494331 - 49494244
Alignment:
Q  142 gtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttcatc 232  Q
    ||||||||||||||  ||||||||| | ||||||||||| |||   |||||||||||| ||||||||||| ||||||||| ||||||||||    
T  49494331 gtgtctcaaaataatcgagtcatttcacttttcaatacactat---taattacttttttcctttataactttaattaatattactttcatc 49494244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 232
Target Start/End: Complemental strand, 28277200 - 28277119
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttttcc-ctttataactctaattaatactactttcatc 232  Q
    ||||||| |||||||||| |||||| ||||||||||   |||||||||||| | ||||||||||||||||||||| |||||||||    
T  28277200 aaaataactgagtcatttcattttttaatacaatat---taattacttttttctctttataactctaattaataccactttcatc 28277119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 4466323 - 4466237
Alignment:
Q  142 gtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttca 230  Q
    |||||||||||||| |||||||||| | ||| ||||||||||| | | |||  |||||||  |||||||||||||||||||||||||||    
T  4466323 gtgtctcaaaataattgagtcatttcactttccaatacaatattaattatt--tttttccaattataactctaattaatactactttca 4466237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 17724883 - 17724795
Alignment:
Q  142 gtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattacttt-ttccctttataactctaattaatactactttcatc 232  Q
    |||||||||||||| |||||||||| |||||||||||||||   |||||||| |||  ||  |||||||||||||||||||||| |||||||    
T  17724883 gtgtctcaaaataattgagtcatttcatttttcaatacaat---attaattattttaatctttttataactctaattaatactattttcatc 17724795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 149 - 232
Target Start/End: Complemental strand, 34877251 - 34877171
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttcatc 232  Q
    ||||||| ||| |||||||| |||||||||||||||   ||||||||||||| | |||||||||||||||||| || |||||||    
T  34877251 aaaataactgaatcattttacttttcaatacaatat---taattactttttctcattataactctaattaatattattttcatc 34877171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 36467364 - 36467276
Alignment:
Q  142 gtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttccc-tttataactctaattaatactactttcatc 232  Q
    |||| ||||||| | |||||||||| | |||||||||||||||   ||||||||||||||| |||||||||| ||||||||||| |||||||    
T  36467364 gtgtttcaaaatgactgagtcatttcacttttcaatacaatat---taattactttttcccctttataactcaaattaatactattttcatc 36467276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 17342767 - 17342851
Alignment:
Q  142 gtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattact-ttttccctttataactctaattaatactacttt 228  Q
    |||||||||||||| ||||| |||| | |||||||||||||   |||||||||| ||||  | |||||||||||||||||||||||||    
T  17342767 gtgtctcaaaataactgagttatttcacttttcaatacaat---attaattactattttttcattataactctaattaatactacttt 17342851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 51848865 - 51848781
Alignment:
Q  142 gtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttc-cctttataactctaattaatactacttt 228  Q
    ||||| |||||||| |||| ||||| | |||||||||||   ||||||||||||||||  |||||||||||||||||||| |||||||    
T  51848865 gtgtcccaaaataagtgagacatttcacttttcaataca---tcattaattactttttttcctttataactctaattaatgctacttt 51848781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 224
Target Start/End: Original strand, 7787617 - 7787696
Alignment:
Q  143 tgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttccc-tttataactctaattaatacta 224  Q
    ||||| ||||||| |||| ||||| ||||||| |||||||||   ||||||||||||||| ||||||||| ||||||||||||    
T  7787617 tgtctaaaaataactgagccatttcatttttcgatacaatat---taattactttttcccctttataactataattaatacta 7787696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 30749715 - 30749782
Alignment:
Q  163 attttatttttcaatacaatatcattaattactttttcc-ctttataactctaattaatactactttcatc 232  Q
    |||| |||||||||||||||||   |||||||||||| | ||||||||||||| |||||||||||||||||    
T  30749715 atttcatttttcaatacaatat---taattacttttttctctttataactctagttaatactactttcatc 30749782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 30771166 - 30771233
Alignment:
Q  163 attttatttttcaatacaatatcattaattactttttcc-ctttataactctaattaatactactttcatc 232  Q
    |||| |||||||||||||||||   |||||||||||| | ||||||||||||| |||||||||||||||||    
T  30771166 atttcatttttcaatacaatat---taattacttttttctctttataactctagttaatactactttcatc 30771233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 232
Target Start/End: Original strand, 49944731 - 49944816
Alignment:
Q  143 tgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttcatc 232  Q
    ||||| |||||||  ||||||||| |  ||||||||||||||   |||||||||||| | |||||||||||||||||||| |||||||||    
T  49944731 tgtcttaaaataaccgagtcatttcacctttcaatacaatat---taattacttttttcttttataactctaattaatac-actttcatc 49944816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 11324194 - 11324275
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttt-tccctttataactctaattaatactactttcatc 232  Q
    ||||||| ||| |||||| | |||||||||||   ||||||| ||||||| ||||||||||||| ||||||||||||| ||||||    
T  11324194 aaaataactgaatcatttcacttttcaataca---tcattaactacttttttccctttataactataattaatactacattcatc 11324275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 11482215 - 11482296
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttt-tccctttataactctaattaatactactttcatc 232  Q
    ||||||| ||| |||||| | |||||||||||   ||||||| ||||||| ||||||||||||| ||||||||||||| ||||||    
T  11482215 aaaataactgaatcatttcacttttcaataca---tcattaactacttttttccctttataactataattaatactacattcatc 11482296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 198 - 232
Target Start/End: Original strand, 26755969 - 26756003
Alignment:
Q  198 ttccctttataactctaattaatactactttcatc 232  Q
    |||||||||||||||||||||||||||||||||||    
T  26755969 ttccctttataactctaattaatactactttcatc 26756003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 8773232 - 8773269
Alignment:
Q  195 tttttccctttataactctaattaatactactttcatc 232  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  8773232 tttttccttttataactctaattaatactactttcatc 8773269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 10370305 - 10370268
Alignment:
Q  195 tttttccctttataactctaattaatactactttcatc 232  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  10370305 tttttccctttataactctaattaatattactttcatc 10370268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 32347921 - 32347962
Alignment:
Q  183 atcattaattactttt-tccctttataactctaattaatact 223  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  32347921 atcattaattacttttttccctttataactctaattaatact 32347962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 16956344 - 16956406
Alignment:
Q  163 attttatttttcaatacaatatcattaattactttttccctttataactctaattaatactacttt 228  Q
    |||| |||||||||| ||||||   |||||||||||| |  |||||||||||||||||||||||||    
T  16956344 atttcatttttcaatgcaatat---taattacttttttcaattataactctaattaatactacttt 16956406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 127
Target Start/End: Original strand, 7787566 - 7787600
Alignment:
Q  93 tatactccctccgtcccataataactgaatcattt 127  Q
    |||||||||||||||||||||||||||| ||||||    
T  7787566 tatactccctccgtcccataataactgagtcattt 7787600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 127
Target Start/End: Complemental strand, 36057830 - 36057796
Alignment:
Q  93 tatactccctccgtcccataataactgaatcattt 127  Q
    |||||||||||||||||||||||||||| ||||||    
T  36057830 tatactccctccgtcccataataactgagtcattt 36057796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 36232918 - 36232872
Alignment:
Q  185 cattaattactttttccct-ttataactctaattaatactactttca 230  Q
    ||||||||||||||| ||  |||||||||||||||||||||||||||    
T  36232918 cattaattacttttttccaattataactctaattaatactactttca 36232872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 230
Target Start/End: Original strand, 36784258 - 36784339
Alignment:
Q  147 tcaaaataaatgagtcattttatttttcaatacaatatcattaattac-tttttccctttataactctaattaatactactttca 230  Q
    ||||||||| |||||||||| | |||||||||||||   ||||||||| ||||| | ||||||||| ||||||||| || |||||    
T  36784258 tcaaaataactgagtcatttcacttttcaatacaat---attaattactttttttcatttataactataattaatattattttca 36784339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 232
Target Start/End: Complemental strand, 52830575 - 52830494
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattac-tttttccctttataactctaattaatactactttcatc 232  Q
    ||||||| |||||||||| | |||||||||||||   ||||||||| |||||| |||||||| | |||||| || ||||||||||    
T  52830575 aaaataactgagtcatttcacttttcaatacaat---attaattacttttttctctttataattttaattagtattactttcatc 52830494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 127
Target Start/End: Original strand, 2886065 - 2886098
Alignment:
Q  94 atactccctccgtcccataataactgaatcattt 127  Q
    ||||||||||||||||||||||||||| ||||||    
T  2886065 atactccctccgtcccataataactgagtcattt 2886098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 232
Target Start/End: Complemental strand, 3719010 - 3718930
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttcatc 232  Q
    ||||||| ||| |||||| | |||||||| ||||||   |||||| |||||||   ||||||||||||||||||||| ||||||    
T  3719010 aaaataagtgactcatttcacttttcaatgcaatat---taattattttttccaactataactctaattaatactaccttcatc 3718930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 28908083 - 28908120
Alignment:
Q  195 tttttccctttataactctaattaatactactttcatc 232  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  28908083 ttttttcctttataactctaataaatactactttcatc 28908120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 29225743 - 29225780
Alignment:
Q  195 tttttccctttataactctaattaatactactttcatc 232  Q
    |||||||  |||||||||||||||||||||||||||||    
T  29225743 tttttccaattataactctaattaatactactttcatc 29225780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 40987921 - 40987962
Alignment:
Q  142 gtgtctcaaaataaatgagtcattttatttttcaatacaata 183  Q
    |||||||||||||| ||| |||||| ||||||||||||||||    
T  40987921 gtgtctcaaaataattgactcatttcatttttcaatacaata 40987962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 232
Target Start/End: Original strand, 42309430 - 42309459
Alignment:
Q  203 tttataactctaattaatactactttcatc 232  Q
    ||||||||||||||||||||||||||||||    
T  42309430 tttataactctaattaatactactttcatc 42309459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 52432269 - 52432337
Alignment:
Q  160 gtcattttatttttcaatacaatatcattaattac-tttttccctttataactctaattaatactactttca 230  Q
    ||||||||| |||||||||||||   ||||||||| ||||| | ||||||||||||||||||  ||||||||    
T  52432269 gtcattttacttttcaatacaat---attaattactttttttcttttataactctaattaatgttactttca 52432337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 2571346 - 2571390
Alignment:
Q  188 taattactttttccctttataactctaattaatactactttcatc 232  Q
    ||||||||||||||   |||||||||| |||||||||||||||||    
T  2571346 taattactttttccaaatataactctagttaatactactttcatc 2571390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 230
Target Start/End: Complemental strand, 11426031 - 11425952
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttttccct-ttataactctaattaatactactttca 230  Q
    ||||||| |||||||||| | ||| |||||||||||   ||||||||||||  |  |||||||| ||||||||||||||||||    
T  11426031 aaaataactgagtcatttcactttccaatacaatat---taattactttttttcaattataactttaattaatactactttca 11425952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 35622918 - 35622861
Alignment:
Q  172 ttcaatacaatatcattaattactttttccctttataactctaattaatactactttcat 231  Q
    ||||||||||||  |||||||  ||||| |  ||||||||||||||||||||||||||||    
T  35622918 ttcaatacaata--attaattttttttttcaattataactctaattaatactactttcat 35622861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 5391987 - 5392074
Alignment:
Q  142 gtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttt--tccctttataactctaattaatactactttca 230  Q
    |||||||||||||| |||||||||| | |||||||||||||||   |||||||||||  ||||||||||||||||||||||||||||||||    
T  5391987 gtgtctcaaaataactgagtcatttcacttttcaatacaatat---taattactttttttccctttataactctaattaatactactttca 5392074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 12653626 - 12653714
Alignment:
Q  142 gtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttcatc 232  Q
    |||| ||||||||| | |||||||| | |||||||||||||||  ||||||||||||||||||||||||||| ||||||| ||||||||||    
T  12653626 gtgtttcaaaataactaagtcatttcacttttcaatacaatat--ttaattactttttccctttataactctgattaatattactttcatc 12653714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 29615743 - 29615825
Alignment:
Q  148 caaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttcatc 232  Q
    |||||||| ||| |||||||| ||||||||||||||| | | |||  ||||||||||||||||| ||||||||||||||||||||    
T  29615743 caaaataactgaatcattttacttttcaatacaatattaattatt--tttttccctttataactttaattaatactactttcatc 29615825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 148 - 230
Target Start/End: Complemental strand, 33191071 - 33190991
Alignment:
Q  148 caaaataaatgagtcattttatttttcaatacaatatcattaattacttttt-ccctttataactctaattaatactactttca 230  Q
    |||||||| |||||||||| | |||||||||||||||   |||||||||||| ||||||||||||||||||| |||||||||||    
T  33191071 caaaataactgagtcatttcacttttcaatacaatat---taattacttttttccctttataactctaattagtactactttca 33190991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 149 - 230
Target Start/End: Complemental strand, 32241585 - 32241506
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattacttttt-ccctttataactctaattaatactactttca 230  Q
    ||||||||||||| |||| | |||||||||||||||   |||||||||||| |||||||||||||||||||||| ||||||||    
T  32241585 aaaataaatgagttatttcacttttcaatacaatat---taattacttttttccctttataactctaattaatattactttca 32241506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 149 - 231
Target Start/End: Complemental strand, 31410769 - 31410689
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctt-tataactctaattaatactactttcat 231  Q
    ||||||| |||||||||| | ||| |||||||||||   ||||||||||||||||| ||||||| |||||||||||||||||||    
T  31410769 aaaataactgagtcatttcactttccaatacaatat---taattactttttcccttctataactttaattaatactactttcat 31410689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 44790591 - 44790504
Alignment:
Q  142 gtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattact--ttttccctttataactctaattaatactactttca 230  Q
    ||||| |||||||| | || ||||| | |||||||||||   ||||||||||||  |||||||||||||||||||||||||||||||||||    
T  44790591 gtgtcccaaaataattaagccatttcacttttcaataca---tcattaattactatttttccctttataactctaattaatactactttca 44790504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 230
Target Start/End: Original strand, 31132674 - 31132755
Alignment:
Q  148 caaaataaatgagtcattttatttttcaatacaatatcattaattacttttt--ccctttataactctaattaatactactttca 230  Q
    ||||||||  ||||||||| |||||||||||||||||   ||||||||||||  ||  |||||||||||||||||||||||||||    
T  31132674 caaaataacggagtcatttcatttttcaatacaatat---taattactttttttcctcttataactctaattaatactactttca 31132755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 9014542 - 9014627
Alignment:
Q  145 tctcaaaataaatgagtcattttatttttcaatacaatatcattaattac-tttttccctttataactctaattaatactactttcatc 232  Q
    ||||||||||| |||||||||||| |||| ||||||||    |||||||| ||||||| ||||||| ||| ||||||||||||||||||    
T  9014542 tctcaaaataactgagtcattttactttttaatacaat---tttaattacttttttccttttataattcttattaatactactttcatc 9014627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 232
Target Start/End: Original strand, 28802661 - 28802794
Alignment:
Q  94 atactccctccgtcccataataactgaatcattttcaatnnnnnnnnngtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaatta 193  Q
    ||||| ||| ||||||||||||||||| |||||||||||         ||||| |||||||| | || ||||| | |||||||||||   ||||||| ||    
T  28802661 atacttccttcgtcccataataactgagtcattttcaataaaaaa---gtgtcacaaaataagtcagccatttcacttttcaataca---tcattaacta 28802754  T
Q  194 ctttt-tccctttataactctaattaatactactttcatc 232  Q
    ||||| ||||||||||||||||||||||| || |||||||    
T  28802755 cttttttccctttataactctaattaataatattttcatc 28802794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 232
Target Start/End: Complemental strand, 38252650 - 38252518
Alignment:
Q  95 tactccctccgtcccataataactgaatcattttcaatnnnnnnnnngtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattac 194  Q
    |||||||||||||||||||||||||| |||||| |||          ||||| |||||||| |||  ||||| | ||||  |||||||||   |||||||    
T  38252650 tactccctccgtcccataataactgagtcatttgcaa---aaaaaaagtgtcccaaaataactgaaccatttcactttttgatacaatat---taattac 38252557  T
Q  195 ttttt-ccctttataactctaattaatactactttcatc 232  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  38252556 ttttttccctttataactctaatcaatactactttcatc 38252518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 38908793 - 38908853
Alignment:
Q  170 ttttcaatacaatatcattaattactttttccctttataactctaattaatactactttca 230  Q
    ||||||||||||||||| | |||| ||||| |  |||||||||||||||||||||||||||    
T  38908793 ttttcaatacaatatcaattattatttttttcaattataactctaattaatactactttca 38908853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 232
Target Start/End: Original strand, 39171483 - 39171570
Alignment:
Q  143 tgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttcccttt-ataactctaattaatactactttcatc 232  Q
    |||| |||||||| |||||||||| | ||||||||| |||||   |||||||||||| | ||| ||||||||||||||||||| |||||||    
T  39171483 tgtcccaaaataactgagtcatttaacttttcaatataatat---taattacttttttctttttataactctaattaatactattttcatc 39171570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 232
Target Start/End: Complemental strand, 34287241 - 34287159
Alignment:
Q  148 caaaataaatgagtcattttatttttcaatacaatatcattaattactttttc-cctttataactctaattaatactactttcatc 232  Q
    |||||||| |||||||||| | ||||||||||||   ||||||| |||||||  ||||||||| ||||||||||| ||||||||||    
T  34287241 caaaataactgagtcatttcacttttcaatacaa---cattaatcactttttttcctttataattctaattaatattactttcatc 34287159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 232
Target Start/End: Complemental strand, 42558743 - 42558661
Alignment:
Q  148 caaaataaatgagtcattttatttttcaatacaatatcattaattactttttcccttt-ataactctaattaatactactttcatc 232  Q
    |||||||| |||||||||| | |||||||||||   |||||||||| ||||| | ||| | |||||||||||||||||||||||||    
T  42558743 caaaataagtgagtcatttcacttttcaataca---tcattaattatttttttctttttacaactctaattaatactactttcatc 42558661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 4480606 - 4480535
Alignment:
Q  148 caaaataaatgagtcattttatttttcaatacaata-tcattaattactttttccctttataactctaattaat 220  Q
    ||||||| | ||||||||| |||||||||||||||| | |||||||  ||||| ||||||||||||||||||||    
T  4480606 caaaatatacgagtcatttcatttttcaatacaatattaattaatt--ttttttcctttataactctaattaat 4480535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 7258493 - 7258447
Alignment:
Q  186 attaattactttttccctttataactctaattaatactactttcatc 232  Q
    ||||||| ||||||||  |||||||||||||||||||||||||||||    
T  7258493 attaattcctttttccaattataactctaattaatactactttcatc 7258447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 232
Target Start/End: Complemental strand, 32967490 - 32967357
Alignment:
Q  94 atactccctccgtcccataataactgaatcattttcaatnnnnnnnnngtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaatta 193  Q
    ||||||| ||||||||||||||||||| |||||| |||          |||| |||||||||   |||||||| | ||||||||||| |||   || |||    
T  32967490 atactccatccgtcccataataactgagtcatttgcaa---aaaaaaagtgtttcaaaataacctagtcatttcacttttcaatacagtat---tagtta 32967397  T
Q  194 ctttttc-cctttataactctaattaatactactttcatc 232  Q
    ||||||  ||||||||||||||||||||||||||||||||    
T  32967396 ctttttttcctttataactctaattaatactactttcatc 32967357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 232
Target Start/End: Original strand, 34133071 - 34133154
Alignment:
Q  147 tcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttcatc 232  Q
    ||||||||| |||||||||  | ||||||||||||||| | | ||||  |||||| |||||||||| |||||||| ||||||||||    
T  34133071 tcaaaataactgagtcattacacttttcaatacaatattaattatta--ttttccttttataactccaattaatattactttcatc 34133154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 232
Target Start/End: Complemental strand, 44615526 - 44615445
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttttccc-tttataactctaattaatactactttcatc 232  Q
    ||||||| |||||||||| | ||| |||||||||||   ||||||||||| ||| ||||||||||||||||||| || |||||||    
T  44615526 aaaataactgagtcatttcactttccaatacaatat---taattacttttccccctttataactctaattaatattattttcatc 44615445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 33925211 - 33925166
Alignment:
Q  186 attaattactttttcccttt-ataactctaattaatactactttca 230  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||    
T  33925211 attaattacttttttccttttataactctaattaatactactttca 33925166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 5962600 - 5962553
Alignment:
Q  186 attaattactttttccc-tttataactctaattaatactactttcatc 232  Q
    ||||||||||||||||| ||||||||||||||||||| || |||||||    
T  5962600 attaattactttttcccctttataactctaattaatattaatttcatc 5962553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 230
Target Start/End: Original strand, 2349294 - 2349375
Alignment:
Q  147 tcaaaataaatgagtcattttatttttcaatacaatatcattaattac-tttttccctttataactctaattaatactactttca 230  Q
    ||||||||| | |||||||| |  ||||||||||||||   ||||||| ||||| | ||||||||||||||||||| ||||||||    
T  2349294 tcaaaataacttagtcatttcacgtttcaatacaatat---taattaccttttttcttttataactctaattaatattactttca 2349375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 28791287 - 28791333
Alignment:
Q  185 cattaattactttt-tccctttataactctaattaatactactttca 230  Q
    |||||||||||||| |||  |||||||||||||||||||||||||||    
T  28791287 cattaattacttttctccaattataactctaattaatactactttca 28791333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 33746345 - 33746299
Alignment:
Q  186 attaattactttttccctttataactctaattaatactactttcatc 232  Q
    |||||||| ||||| ||||||||||| |||||||||||| |||||||    
T  33746345 attaattatttttttcctttataactataattaatactattttcatc 33746299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 2195458 - 2195495
Alignment:
Q  195 tttttccctttataactctaattaatactactttcatc 232  Q
    |||||||  |||||||||||||||||||||||||||||    
T  2195458 tttttccaattataactctaattaatactactttcatc 2195495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 3442430 - 3442510
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttcatc 232  Q
    ||||||| ||| | |||||| |||||||| ||||||   |||||| ||||| |  ||||||||||||||||||||| |||||||    
T  3442430 aaaataagtgacttattttacttttcaattcaatat---taattatttttttcaattataactctaattaatactattttcatc 3442510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 127
Target Start/End: Original strand, 14689854 - 14689887
Alignment:
Q  94 atactccctccgtcccataataactgaatcattt 127  Q
    ||||||||||||||||||||||||||| ||||||    
T  14689854 atactccctccgtcccataataactgagtcattt 14689887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 14748855 - 14748788
Alignment:
Q  162 cattttatttttcaatacaatatcattaattacttttt--ccctttataactctaattaatactactttca 230  Q
    ||||||| |||||||||||||||   ||||||||||||  ||  ||||||| |||||||||||||||||||    
T  14748855 cattttacttttcaatacaatat---taattactttttttccaattataacactaattaatactactttca 14748788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 36012112 - 36012054
Alignment:
Q  170 ttttcaatacaatatcattaattactttttccctttataactctaattaatactactttca 230  Q
    ||||||||||||||| | | |||  |||||||  |||||||||||||||||||||||||||    
T  36012112 ttttcaatacaatattaattatt--tttttccacttataactctaattaatactactttca 36012054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 232
Target Start/End: Complemental strand, 8418410 - 8418382
Alignment:
Q  204 ttataactctaattaatactactttcatc 232  Q
    |||||||||||||||||||||||||||||    
T  8418410 ttataactctaattaatactactttcatc 8418382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 10729132 - 10729100
Alignment:
Q  95 tactccctccgtcccataataactgaatcattt 127  Q
    |||||||||||||||||||||||||| ||||||    
T  10729132 tactccctccgtcccataataactgagtcattt 10729100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 29451243 - 29451275
Alignment:
Q  95 tactccctccgtcccataataactgaatcattt 127  Q
    |||||| ||||||||||||||||||||||||||    
T  29451243 tactccatccgtcccataataactgaatcattt 29451275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 231
Target Start/End: Complemental strand, 38201539 - 38201472
Alignment:
Q  161 tcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttcat 231  Q
    |||||| | ||||||||||||||    |||||| ||||| | ||||||||||||||||||| |||||||||    
T  38201539 tcatttcacttttcaatacaataa---taattatttttttcatttataactctaattaatattactttcat 38201472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 232
Target Start/End: Complemental strand, 44975857 - 44975829
Alignment:
Q  204 ttataactctaattaatactactttcatc 232  Q
    |||||||||||||||||||||||||||||    
T  44975857 ttataactctaattaatactactttcatc 44975829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 50)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 103 - 232
Target Start/End: Complemental strand, 42186000 - 42185876
Alignment:
Q  103 ccgtcccataataactgaatcattttcaatnnnnnnnnngtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttccc 202  Q
    |||||||||||||||||| |||||||||||          |||| |||||||| |||||||||||| |||||||||||   |||||||||||||||| ||    
T  42186000 ccgtcccataataactgagtcattttcaataaaaaaa---tgtcccaaaataagtgagtcattttacttttcaataca---tcattaattacttttttcc 42185907  T
Q  203 -tttataactctaattaatactactttcatc 232  Q
     ||||||||||||||||||||||||||||||    
T  42185906 atttataactctaattaatactactttcatc 42185876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 96 - 232
Target Start/End: Complemental strand, 42024412 - 42024281
Alignment:
Q  96 actccctccgtcccataataactgaatcattttcaatnnnnnnnnngtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattact 195  Q
    ||||||||||||||||||||||||| |||||||||||         |||||  || ||||||||||||||| | |||||||||||   |||||||||| |    
T  42024412 actccctccgtcccataataactgagtcattttcaataaaaaa---gtgtcctaagataaatgagtcatttcacttttcaataca---tcattaattatt 42024319  T
Q  196 tttt-ccctttataactctaattaatactactttcatc 232  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  42024318 tttttccctttataactataattaatactactttcatc 42024281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 142 - 234
Target Start/End: Original strand, 8294970 - 8295060
Alignment:
Q  142 gtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattac-tttttccctttataactctaattaatactactttcatctc 234  Q
    ||||| ||||||||  ||||||||| | |||||||||||||||   ||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  8294970 gtgtcccaaaataaccgagtcatttcacttttcaatacaatat---taattacctttttccctttataactctaatttatactactttcatctc 8295060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 143 - 233
Target Start/End: Original strand, 49812169 - 49812257
Alignment:
Q  143 tgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttcatct 233  Q
    |||| |||||||| |||||||||| | ||||||||||||||| | | |||  |||||||||||||||||||||||||||||| ||||||||    
T  49812169 tgtcccaaaataactgagtcatttcacttttcaatacaatattaattatt--tttttccctttataactctaattaatactattttcatct 49812257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 148 - 230
Target Start/End: Complemental strand, 35998280 - 35998199
Alignment:
Q  148 caaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttca 230  Q
    |||||||| |||||||||| | ||||| ||||||||| | | |||| ||||||||||||||||||||||||||||||||||||    
T  35998280 caaaataattgagtcatttcacttttcgatacaatattaattatta-tttttccctttataactctaattaatactactttca 35998199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 54729648 - 54729563
Alignment:
Q  145 tctcaaaataaatgagtcattttatttttcaatacaatatcattaattacttttt-ccctttataactctaattaatactactttcatc 232  Q
    ||||||||||| ||| |||||| | ||| |||||||||||   |||||||||||| |||||||||||||||||||||||||||||||||    
T  54729648 tctcaaaataactgaatcatttcactttccaatacaatat---taattacttttttccctttataactctaattaatactactttcatc 54729563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 95 - 232
Target Start/End: Complemental strand, 41710356 - 41710224
Alignment:
Q  95 tactccctccgtcccataataactgaatcattttcaatnnnnnnnnngtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattac 194  Q
    |||||| |||||| |||||||||||| |||||||||||         ||||| |||||||| ||||  |||| | |||||||||||   |||||||||||    
T  41710356 tactccatccgtctcataataactgagtcattttcaataaaaaa---gtgtcccaaaataagtgagctatttcacttttcaataca---tcattaattac 41710263  T
Q  195 ttttt-ccctttataactctaattaatactactttcatc 232  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  41710262 ttttttccctttataactctaattaatattactttcatc 41710224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 143 - 232
Target Start/End: Complemental strand, 44020929 - 44020842
Alignment:
Q  143 tgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttcc-ctttataactctaattaatactactttcatc 232  Q
    ||||||||||||| ||| |||||||| ||||| |||||||||   |||||||||||| | ||||||||||||||| |||||||||||||||    
T  44020929 tgtctcaaaataattgaatcattttacttttcgatacaatat---taattacttttttctctttataactctaatcaatactactttcatc 44020842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 48740460 - 48740543
Alignment:
Q  143 tgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttt-tccctttataactctaattaatactacttt 228  Q
    ||||||||||||| |||||||||| | ||||||| |||||||   ||||||||||| ||||||||||||||||||||||| ||||||    
T  48740460 tgtctcaaaataactgagtcatttcacttttcaaaacaatat---taattacttttttccctttataactctaattaatattacttt 48740543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 34020975 - 34021051
Alignment:
Q  143 tgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaata 221  Q
    ||||||||||||| |||||||||| | ||||||||||||||| | | |||  |||||||||||||||||||||||||||    
T  34020975 tgtctcaaaataagtgagtcatttcacttttcaatacaatataaattatt--tttttccctttataactctaattaata 34021051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 18849926 - 18849841
Alignment:
Q  143 tgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattacttttt-ccctttataactctaattaatactactttca 230  Q
    |||| |||||||| |||||||||| | ||||||||| |||||   |||||||||||| |||||||||||||||||||||| ||||||||    
T  18849926 tgtcccaaaataactgagtcatttcacttttcaataaaatat---taattacttttttccctttataactctaattaatattactttca 18849841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 32559121 - 32559190
Alignment:
Q  161 tcattttatttttcaatacaatatcattaattactttttcccttt-ataactctaattaatactactttcatc 232  Q
    |||||||| |||||||||||||||   |||||||||| ||||||| |||||||||||||||||||||||||||    
T  32559121 tcattttacttttcaatacaatat---taattactttctcccttttataactctaattaatactactttcatc 32559190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 39979726 - 39979807
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttttccc-tttataactctaattaatactactttcatc 232  Q
    ||||||| ||||| |||| | |||||||||||||||   ||||||||||||||| ||||||||||||||||||| ||||||||||    
T  39979726 aaaataattgagttatttcacttttcaatacaatat---taattactttttcccctttataactctaattaatattactttcatc 39979807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 232
Target Start/End: Original strand, 49306481 - 49306614
Alignment:
Q  93 tatactccctccgtcccataataactgaatcattttcaatnnnnnnnnngtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaatt 192  Q
    |||||||||||||||||||||||| |    ||||||||||         ||||| |||||||| |||| ||||| | |||||||||||   |||||||||    
T  49306481 tatactccctccgtcccataataagt----cattttcaataaataaaaagtgtcccaaaataagtgagccatttcacttttcaataca---tcattaatt 49306573  T
Q  193 actttttc-cctttataactctaattaatactactttcatc 232  Q
    | |||||  ||||||||||||||||||||||||||||||||    
T  49306574 attttttttcctttataactctaattaatactactttcatc 49306614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 230
Target Start/End: Original strand, 31862739 - 31862819
Alignment:
Q  148 caaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttca 230  Q
    ||||||||  ||||||||| | |||||||||| |||| | | |||  ||||||||||||||||||||||||||||||||||||    
T  31862739 caaaataaccgagtcatttcacttttcaatacgatattaattatt--tttttccctttataactctaattaatactactttca 31862819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 34791113 - 34791039
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttttc-cctttataactctaattaatactac 225  Q
    ||||||| |||||||||||| |||| ||||||||||   ||||||||||||  |||||||||||||||||||||||||    
T  34791113 aaaataattgagtcattttactttttaatacaatat---taattactttttttcctttataactctaattaatactac 34791039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 38976971 - 38977018
Alignment:
Q  186 attaattactttt-tccctttataactctaattaatactactttcatc 232  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38976971 attaattacttttttccctttataactctaattaatactactttcatc 38977018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 47846844 - 47846926
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttcatc 232  Q
    ||||||| ||| |||| ||| ||||||||||||||| | ||||| |||||||   |||||||||||||||||||||||||||||    
T  47846844 aaaataactgattcatcttacttttcaatacaatattaataatt-ctttttctaattataactctaattaatactactttcatc 47846926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 3685957 - 3686038
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttttccc-tttataactctaattaatactactttcatc 232  Q
    ||||||| |||||||||| | ||| |||||||||||   |||||| |||||||| ||||||||||||||||||| ||||||||||    
T  3685957 aaaataactgagtcatttcactttccaatacaatat---taattattttttcccctttataactctaattaatattactttcatc 3686038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 232
Target Start/End: Original strand, 29644295 - 29644382
Alignment:
Q  143 tgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttcatc 232  Q
    |||| |||||||| |||| ||||| | ||||||||||||||| | ||| |  ||||||| ||||||||| ||||||||||||||||||||    
T  29644295 tgtcccaaaataactgagacatttcacttttcaatacaatattaataact--tttttccttttataactataattaatactactttcatc 29644382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 228
Target Start/End: Original strand, 42544155 - 42544232
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttttc-cctttataactctaattaatactacttt 228  Q
    |||||||||||||||||| | |||||||||||   ||||||| ||||||||  ||||||||||||||||||||| ||||||    
T  42544155 aaaataaatgagtcatttcacttttcaataca---tcattaactactttttttcctttataactctaattaatattacttt 42544232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 39053067 - 39052983
Alignment:
Q  143 tgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttca 230  Q
    |||| |||||||| |||| ||||| | ||||||||| |||||   ||| || ||||||| ||||||||||||||||||||||||||||    
T  39053067 tgtcacaaaataattgagccatttcacttttcaatataatat---taactattttttccttttataactctaattaatactactttca 39052983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 232
Target Start/End: Complemental strand, 39258438 - 39258352
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaata---tcattaattactttttccctttataactctaattaatactactttcatc 232  Q
    ||||||| |||||||||| | || | |||||||||   | |||||||| ||||||||||||||||| ||||||||| ||||||||||    
T  39258438 aaaataattgagtcatttcacttattaatacaatactctaattaattattttttccctttataactttaattaataatactttcatc 39258352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 232
Target Start/End: Complemental strand, 47788014 - 47787927
Alignment:
Q  143 tgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttcccttt-ataactctaattaatactactttcatc 232  Q
    |||| |||||||| | |||||| | | |||||||||||||||   ||||||||||||  |||| |||||||||||||||||||||||||||    
T  47788014 tgtcccaaaataattaagtcatataacttttcaatacaatat---taattactttttttcttttataactctaattaatactactttcatc 47787927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 22496804 - 22496757
Alignment:
Q  186 attaattactttttccc-tttataactctaattaatactactttcatc 232  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||    
T  22496804 attaattattttttcccctttataactctaattaatactactttcatc 22496757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 232
Target Start/End: Original strand, 28974251 - 28974333
Alignment:
Q  147 tcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttcatc 232  Q
    ||||||||| |||||||||| | |||||||||||||   |||||| | ||||| | ||||||| ||| ||||||||||||||||||    
T  28974251 tcaaaataactgagtcatttcacttttcaatacaat---attaataatttttttcatttataattctgattaatactactttcatc 28974333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 231
Target Start/End: Original strand, 29656459 - 29656595
Alignment:
Q  94 atactccctccgtcccataataactgaatcattttcaatnnnnnnnnngtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaatta 193  Q
    ||||| ||| |||||||||||||||||  |||||| |||         ||||| |||||||| |||  ||||| | |||||||||||   ||||||||||    
T  29656459 atacttccttcgtcccataataactgagccatttttaataaaaaaaaagtgtcccaaaataagtgaaccatttcacttttcaataca---tcattaatta 29656555  T
Q  194 ctttt--tccctttataactctaattaatactactttcat 231  Q
     ||||  |||||||||||||||||||||||| ||||||||    
T  29656556 ttttttttccctttataactctaattaataccactttcat 29656595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 39976559 - 39976470
Alignment:
Q  142 gtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattacttttt--ccctttataactctaattaatactactttcatc 232  Q
    ||||| |||||||  |||||||||| |||||||||| ||||||   ||||||||||||  | ||||||||| || ||||||||||||||||||    
T  39976559 gtgtcccaaaatatctgagtcatttcatttttcaatgcaatat---taattactttttttctctttataacactgattaatactactttcatc 39976470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 230
Target Start/End: Complemental strand, 48400791 - 48400713
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttca 230  Q
    ||||||| |||||||||| | |||||||||||||||   |||||||||||||| ||||  |||||||||||||  |||||||    
T  48400791 aaaataattgagtcatttcacttttcaatacaatat---taattactttttccttttacgactctaattaatatcactttca 48400713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 231
Target Start/End: Complemental strand, 40881355 - 40881274
Alignment:
Q  148 caaaataaatgagtcattttatttttcaatacaatatcattaattactttttcccttt-ataactctaattaatactactttcat 231  Q
    ||||||||  ||||||||| | ||||||||||||||    |||||||||||| ||||| ||||||||||| ||||||||||||||    
T  40881355 caaaataaccgagtcatttcacttttcaatacaatag---taattacttttttccttttataactctaataaatactactttcat 40881274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 231
Target Start/End: Complemental strand, 35910019 - 35909949
Alignment:
Q  157 tgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttcat 231  Q
    ||||| |||||| |||||||||||||||   |||||| ||||||| ||||| ||||||||||||| |||||||||    
T  35910019 tgagttattttacttttcaatacaatat---taattattttttcc-tttattactctaattaatattactttcat 35909949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 127
Target Start/End: Original strand, 25390608 - 25390643
Alignment:
Q  92 ttatactccctccgtcccataataactgaatcattt 127  Q
    ||||||||||||||||||||||||||||| ||||||    
T  25390608 ttatactccctccgtcccataataactgagtcattt 25390643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 230
Target Start/End: Complemental strand, 29815259 - 29815179
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttttcccttt-ataactctaattaatactactttca 230  Q
    |||||||  ||||||||| | ||||||||||||||| |||| ||  ||||||| ||| |||||||||||||||| ||||||||    
T  29815259 aaaataacggagtcatttcacttttcaatacaatattattattt--tttttcctttttataactctaattaatattactttca 29815179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 127
Target Start/End: Complemental strand, 20964508 - 20964474
Alignment:
Q  93 tatactccctccgtcccataataactgaatcattt 127  Q
    |||||||||||||||||||||||||||| ||||||    
T  20964508 tatactccctccgtcccataataactgagtcattt 20964474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 25149430 - 25149476
Alignment:
Q  185 cattaattactttttccct-ttataactctaattaatactactttca 230  Q
    ||||||||||||||| ||  |||||||||||||||||||||||||||    
T  25149430 cattaattacttttttccaattataactctaattaatactactttca 25149476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 229
Target Start/End: Original strand, 26185179 - 26185213
Alignment:
Q  195 tttttccctttataactctaattaatactactttc 229  Q
    |||||| ||||||||||||||||||||||||||||    
T  26185179 tttttctctttataactctaattaatactactttc 26185213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 35998332 - 35998294
Alignment:
Q  93 tatactccctccgtcccataataactgaatcattttcaa 131  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  35998332 tatactccctccgtcccataataacggagtcattttcaa 35998294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 38319869 - 38319938
Alignment:
Q  161 tcattttatttttcaatacaatatcattaattactttttccct-ttataactctaattaatactactttcatc 232  Q
    |||||| | |||||||||||||||   |||||||||||| ||  ||||||| |||||||||||||||||||||    
T  38319869 tcatttcacttttcaatacaatat---taattacttttttccaattataacactaattaatactactttcatc 38319938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 41203676 - 41203760
Alignment:
Q  143 tgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttccc--tttataactctaattaatactacttt 228  Q
    |||| |||| ||| |||||||||| | || ||||||||||||   ||||||||||||  |  ||||||||||||||||||||||||||    
T  41203676 tgtcacaaactaactgagtcatttcacttatcaatacaatat---taattactttttttcattttataactctaattaatactacttt 41203760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 44633114 - 44633182
Alignment:
Q  161 tcattttatttttcaatacaatatcattaattacttttt--ccctttataactctaattaatactactttca 230  Q
    |||||| | ||||||||||||   |||||||||||||||  ||  |||||||||||||||||||||||||||    
T  44633114 tcatttcacttttcaatacaa---cattaattactttttttccaattataactctaattaatactactttca 44633182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 4357558 - 4357595
Alignment:
Q  195 tttttccctttataactctaattaatactactttcatc 232  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  4357558 tttttccatttataactctaattaatactattttcatc 4357595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 4360548 - 4360488
Alignment:
Q  170 ttttcaatacaatatcattaattactttttccctt-tataactctaattaatactactttcatc 232  Q
    ||||||||||||   ||||||||||||||| ||   ||||||||||||||||||||||||||||    
T  4360548 ttttcaatacaa---cattaattacttttttccaaatataactctaattaatactactttcatc 4360488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 33047437 - 33047514
Alignment:
Q  142 gtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatacta 224  Q
    ||||| |||||||| |||||||||| | |||||||||||||   ||||||||| ||||   |||||||||||||| |||||||    
T  33047437 gtgtcccaaaataactgagtcatttcacttttcaatacaat---attaattacatttt--ttttataactctaatcaatacta 33047514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 37309637 - 37309725
Alignment:
Q  142 gtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattact-ttttccctttataactctaattaatactactttcatc 232  Q
    |||||||||||||  ||||| |||| | ||||||||| |||||   ||| || | |||| ||||||||||||||||||||| ||||||||||    
T  37309637 gtgtctcaaaatatctgagttatttcagttttcaatagaatat---taactattgtttttcctttataactctaattaatattactttcatc 37309725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 232
Target Start/End: Complemental strand, 1825409 - 1825328
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttcatc 232  Q
    ||||||| |||||||||| | ||||||||| ||||| | | |||  ||||||  ||||||||||||||||||| || |||||||    
T  1825409 aaaataactgagtcatttcacttttcaatataatattaattatt--tttttctttttataactctaattaatattattttcatc 1825328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 232
Target Start/End: Original strand, 17237042 - 17237070
Alignment:
Q  204 ttataactctaattaatactactttcatc 232  Q
    |||||||||||||||||||||||||||||    
T  17237042 ttataactctaattaatactactttcatc 17237070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 232
Target Start/End: Original strand, 41436480 - 41436508
Alignment:
Q  204 ttataactctaattaatactactttcatc 232  Q
    |||||||||||||||||||||||||||||    
T  41436480 ttataactctaattaatactactttcatc 41436508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 45289976 - 45290065
Alignment:
Q  142 gtgtctcaaaataaatgagtcattttatttttcaatacaatatc-attaattactttttccctttataactctaattaatactactttcatc 232  Q
    |||||||||||||| ||| | |||| | |||||| ||||||||  |||| ||  |||||||||||||||||||||| |||| || |||||||    
T  45289976 gtgtctcaaaataactgaattatttcacttttcagtacaatatttattattt--tttttccctttataactctaatcaatattattttcatc 45290065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 232
Target Start/End: Original strand, 49448840 - 49448868
Alignment:
Q  204 ttataactctaattaatactactttcatc 232  Q
    |||||||||||||||||||||||||||||    
T  49448840 ttataactctaattaatactactttcatc 49448868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 221
Target Start/End: Original strand, 51527364 - 51527435
Alignment:
Q  148 caaaataaatgagtcattttatttttcaatacaatatcattaattactttttcccttt-ataactctaattaata 221  Q
    |||| ||| |||||||||| | |||| ||||||||||   |||||||||||| ||||| ||||||||||||||||    
T  51527364 caaagtaactgagtcatttcactttttaatacaatat---taattacttttttccttttataactctaattaata 51527435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 95 - 232
Target Start/End: Original strand, 394672 - 394805
Alignment:
Q  95 tactccctccgtcccataataactgaatcattttcaatnnnnnnnnngtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattac 194  Q
    |||||||||||||||||||||||||| |||||||||||         ||||  |||||||| |||||||||  | | |||||||||   |||||||||||    
T  394672 tactccctccgtcccataataactgagtcattttcaatataaaaaa-gtgttccaaaataagtgagtcattc-actcttcaataca---tcattaattac 394766  T
Q  195 tttt-tccctttataactctaattaatactactttcatc 232  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  394767 ttttttccctttataactctaattaatactactttcatc 394805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 21296671 - 21296585
Alignment:
Q  142 gtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttcccttt-ataactctaattaatactactttca 230  Q
    ||||||| |||||| |||||||||| | |||||||||||||||   |||||||||||| ||||| |||||||||||||||||||||||||    
T  21296671 gtgtctcgaaataactgagtcatttcacttttcaatacaatat---taattacttttttccttttataactctaattaatactactttca 21296585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 149 - 232
Target Start/End: Complemental strand, 38600966 - 38600886
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttcatc 232  Q
    ||||||| |||||||||| |  ||||||||||||||   |||||||| ||||| ||||||||||||||||||||||||||||||    
T  38600966 aaaataattgagtcatttcacctttcaatacaatat---taattactctttccatttataactctaattaatactactttcatc 38600886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 39365185 - 39365097
Alignment:
Q  142 gtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttccc-tttataactctaattaatactactttcatc 232  Q
    ||||| |||||||| |||| ||||| | |||||||||||||||   ||||||||||||||| |||||||||||||||||||||| |||||||    
T  39365185 gtgtcccaaaataactgagccatttcaattttcaatacaatat---taattactttttcccctttataactctaattaatactattttcatc 39365097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 41031511 - 41031599
Alignment:
Q  142 gtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttccc-tttataactctaattaatactactttcatc 232  Q
    ||||| |||||||| |||||||||| | |||||||||||||||   |||||||||||| || ||||||||| ||||||||||||||||||||    
T  41031511 gtgtcgcaaaataattgagtcatttcacttttcaatacaatat---taattacttttttccatttataactttaattaatactactttcatc 41031599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 151 - 232
Target Start/End: Original strand, 26832019 - 26832098
Alignment:
Q  151 aataaatgagtcattttatttttcaatacaatatcattaattactttttccctt-tataactctaattaatactactttcatc 232  Q
    |||||||||||||||||||||||||||||||   |||||||||||||||  |   ||||||||||||||||||||||||||||    
T  26832019 aataaatgagtcattttatttttcaatacaa---cattaattactttttttcaaatataactctaattaatactactttcatc 26832098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 149 - 230
Target Start/End: Original strand, 51164898 - 51164977
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaa-tactactttca 230  Q
    |||||||  ||||||||| | |||||||||||||||   |||||||||||||||||||||||||||||||| |||||||||||    
T  51164898 aaaataatcgagtcatttcacttttcaatacaatat---taattactttttccctttataactctaattaagtactactttca 51164977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 1334907 - 1334863
Alignment:
Q  186 attaattactttttccctttataactctaattaatactactttca 230  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  1334907 attaattacttttttcctttataactctaattaatactactttca 1334863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 232
Target Start/End: Complemental strand, 26134915 - 26134783
Alignment:
Q  95 tactccctccgtcccataataactgaatcattttcaatnnnnnnnnngtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattac 194  Q
    |||||| ||||||||||||||||||| |||||||||||         ||||   ||||||| |||||||||| | |||||||||||   ||||||| |||    
T  26134915 tactccttccgtcccataataactgactcattttcaataaaaaa---gtgttctaaaataagtgagtcatttcacttttcaataca---tcattaactac 26134822  T
Q  195 tttttcccttt-ataactctaattaatactactttcatc 232  Q
    ||||| ||||| ||||||||||||| |||||||||||||    
T  26134821 ttttttccttttataactctaattagtactactttcatc 26134783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 232
Target Start/End: Complemental strand, 32023262 - 32023181
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttcatc 232  Q
    ||||||| |||||||||| | ||| ||||||||||| | | |||  ||||||||||||||||||||||||||| ||||||||||    
T  32023262 aaaataactgagtcatttcactttccaatacaatattaattatt--tttttccctttataactctaattaatattactttcatc 32023181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 33994603 - 33994684
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttcatc 232  Q
    ||||||| |||||||||| | |||||||||||||||  | |||   |||||||||||||||||||||||||||| |||||||||    
T  33994603 aaaataactgagtcatttcacttttcaatacaatat--taaatatttttttccctttataactctaattaataccactttcatc 33994684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 5245357 - 5245439
Alignment:
Q  148 caaaataaatgagtcattttatttttcaatacaatatcattaattac-tttttccctttataactctaattaatactactttcatc 232  Q
    |||||||| |||| ||||| | |||||||||||   | ||||||||| |||||||||||||||||||||||||||| |||||||||    
T  5245357 caaaataagtgagccatttcacttttcaataca---tgattaattacatttttccctttataactctaattaataccactttcatc 5245439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 232
Target Start/End: Complemental strand, 39866715 - 39866633
Alignment:
Q  148 caaaataaatgagtcattttatttttcaatacaatatcattaattactttttccc-tttataactctaattaatactactttcatc 232  Q
    |||||||| |||| ||||||| ||| | |||||||||   ||||||||||||||| |||||||||||||||||||| |||||||||    
T  39866715 caaaataattgagccattttactttcctatacaatat---taattactttttcccctttataactctaattaataccactttcatc 39866633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 230
Target Start/End: Complemental strand, 54021618 - 54021540
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttca 230  Q
    ||||||| | |||||||| | ||||||||| |||||   |||||| ||||||||||||||| ||||||||||||||||||||    
T  54021618 aaaataattaagtcatttcacttttcaatataatat---taattaatttttccctttataattctaattaatactactttca 54021540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 54493888 - 54493935
Alignment:
Q  186 attaattactttt-tccctttataactctaattaatactactttcatc 232  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  54493888 attaattacttttttccctttataactctaattaatactactttcatc 54493935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 15280547 - 15280632
Alignment:
Q  145 tctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttcccttt-ataactctaattaatactactttcatc 232  Q
    ||||||||||| ||| | |||| | |||||||||||   |||||||||||||||| ||||| ||||| |||||||||||||||||||||    
T  15280547 tctcaaaataagtgaataatttcacttttcaataca---tcattaattacttttttccttttataaccctaattaatactactttcatc 15280632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 16134530 - 16134484
Alignment:
Q  186 attaattactttttccctttataactctaattaatactactttcatc 232  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||    
T  16134530 attaattacttttttcctttataattctaattaatactactttcatc 16134484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 230
Target Start/End: Complemental strand, 21585622 - 21585492
Alignment:
Q  95 tactccctccgtcccataataactgaatcattttcaatnnnnnnnnngtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattac 194  Q
    ||||| |||||| ||||||||||||| |||||||||||         ||||| |||||||| |||||||||| | ||| |||||||||||   ||||||     
T  21585622 tactctctccgttccataataactgagtcattttcaataaaaaa---gtgtcccaaaataactgagtcatttcactttccaatacaatat---taattat 21585529  T
Q  195 tttttccct-ttataactctaattaatactactttca 230  Q
    ||||||||  |||||||||||||||||| ||||||||    
T  21585528 tttttcccaattataactctaattaatattactttca 21585492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 231
Target Start/End: Original strand, 48744170 - 48744251
Alignment:
Q  148 caaaataaatgagtcattttatttttcaatacaatatcattaattactttttcc-ctttataactctaattaatactactttcat 231  Q
    |||||||| | |||||||||| |||| ||||||||||   |||||||||||| | |||||||||||||||||||| |||||||||    
T  48744170 caaaataactaagtcattttactttttaatacaatat---taattacttttttctctttataactctaattaatattactttcat 48744251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 198 - 232
Target Start/End: Complemental strand, 32827418 - 32827384
Alignment:
Q  198 ttccctttataactctaattaatactactttcatc 232  Q
    |||||||||||||||||||||||||||||||||||    
T  32827418 ttccctttataactctaattaatactactttcatc 32827384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 49003217 - 49003286
Alignment:
Q  150 aaataaatgagtcattttatttttcaatacaatatcattaattac-tttttccctttataactctaattaata 221  Q
    |||||| |||||||||||| |||||||||||||   ||||||||| |||||| |||||||||||| |||||||    
T  49003217 aaataagtgagtcattttacttttcaatacaat---attaattacttttttctctttataactctcattaata 49003286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 9218135 - 9218172
Alignment:
Q  195 tttttccctttataactctaattaatactactttcatc 232  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  9218135 tttttccatttataactctaattaatactactttcatc 9218172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 230
Target Start/End: Original strand, 26142855 - 26142931
Alignment:
Q  152 ataaatgagtcattttatttttcaatacaatatcattaattactttttccct-ttataactctaattaatactactttca 230  Q
    |||| |||||||||||| ||||||||| |||   |||||||||||||| ||| ||||||||||| || ||||||||||||    
T  26142855 ataactgagtcattttacttttcaatataat---attaattacttttttcctcttataactctagttgatactactttca 26142931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 54122391 - 54122306
Alignment:
Q  142 gtgtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttcccttt-ataactctaattaatactactttca 230  Q
    ||||| |||||||| | |||||||| | ||||||||| ||    |||||||||||||| ||||| ||||||||||| |||||||||||||    
T  54122391 gtgtcccaaaataacttagtcatttcacttttcaatataa----attaattacttttttccttttataactctaatcaatactactttca 54122306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 48409551 - 48409609
Alignment:
Q  170 ttttcaatacaatatcattaattactttttccct-ttataactctaattaatactactttca 230  Q
    ||||||||||||   ||||||||||||||| ||  |||||||||||||||||||||||||||    
T  48409551 ttttcaatacaa---cattaattacttttttccaattataactctaattaatactactttca 48409609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 1334989 - 1334951
Alignment:
Q  93 tatactccctccgtcccataataactgaatcattttcaa 131  Q
    |||||||||||||||||||||||||||| |||||| |||    
T  1334989 tatactccctccgtcccataataactgagtcatttgcaa 1334951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 232
Target Start/End: Original strand, 45392079 - 45392117
Alignment:
Q  194 ctttttccctttataactctaattaatactactttcatc 232  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  45392079 ctttttccttttataactctaattaatattactttcatc 45392117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 231
Target Start/End: Complemental strand, 54845679 - 54845597
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttcat 231  Q
    ||||||| | |||||||| | |||| |||||||||| | | ||   ||||||  |||||||||||||||||||||||||||||    
T  54845679 aaaataactaagtcatttcactttttaatacaatattaattatatttttttctatttataactctaattaatactactttcat 54845597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 3862297 - 3862252
Alignment:
Q  187 ttaattactttttccctttataactctaattaatactactttcatc 232  Q
    ||||||||||||| |  |||||||||||||||||| ||||||||||    
T  3862297 ttaattacttttttcaattataactctaattaatattactttcatc 3862252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 30261627 - 30261582
Alignment:
Q  188 taattactttttccct-ttataactctaattaatactactttcatc 232  Q
    ||||||||||||||   |||||||||||||||||||||||||||||    
T  30261627 taattactttttcctaattataactctaattaatactactttcatc 30261582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 38601018 - 38600981
Alignment:
Q  94 atactccctccgtcccataataactgaatcattttcaa 131  Q
    ||||||||||||||||||||||||||| |||||| |||    
T  38601018 atactccctccgtcccataataactgagtcatttgcaa 38600981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 232
Target Start/End: Original strand, 47684765 - 47684794
Alignment:
Q  203 tttataactctaattaatactactttcatc 232  Q
    ||||||||||||||||||||||||||||||    
T  47684765 tttataactctaattaatactactttcatc 47684794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 53051006 - 53051051
Alignment:
Q  186 attaattactttt-tccctttataactctaattaatactactttca 230  Q
    ||||||||||||| |||  |||||||||||||||||||||||||||    
T  53051006 attaattacttttctccaattataactctaattaatactactttca 53051051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 232
Target Start/End: Original strand, 8706147 - 8706175
Alignment:
Q  204 ttataactctaattaatactactttcatc 232  Q
    |||||||||||||||||||||||||||||    
T  8706147 ttataactctaattaatactactttcatc 8706175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 232
Target Start/End: Original strand, 9058034 - 9058062
Alignment:
Q  204 ttataactctaattaatactactttcatc 232  Q
    |||||||||||||||||||||||||||||    
T  9058034 ttataactctaattaatactactttcatc 9058062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 232
Target Start/End: Complemental strand, 37041981 - 37041953
Alignment:
Q  204 ttataactctaattaatactactttcatc 232  Q
    |||||||||||||||||||||||||||||    
T  37041981 ttataactctaattaatactactttcatc 37041953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 230
Target Start/End: Complemental strand, 43639626 - 43639598
Alignment:
Q  202 ctttataactctaattaatactactttca 230  Q
    |||||||||||||||||||||||||||||    
T  43639626 ctttataactctaattaatactactttca 43639598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 232
Target Start/End: Original strand, 45746365 - 45746393
Alignment:
Q  204 ttataactctaattaatactactttcatc 232  Q
    |||||||||||||||||||||||||||||    
T  45746365 ttataactctaattaatactactttcatc 45746393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 232
Target Start/End: Original strand, 47496168 - 47496196
Alignment:
Q  204 ttataactctaattaatactactttcatc 232  Q
    |||||||||||||||||||||||||||||    
T  47496168 ttataactctaattaatactactttcatc 47496196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 144 - 230
Target Start/End: Original strand, 31265721 - 31265804
Alignment:
Q  144 gtctcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttca 230  Q
    |||||||||||| | |||||||| | |||||||||||||||   |||||| ||||| ||||||||||||||||||||| ||||||||    
T  31265721 gtctcaaaataacttagtcatttcacttttcaatacaatat---taattatttttttcctttataactctaattaatattactttca 31265804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 230
Target Start/End: Complemental strand, 3604761 - 3604682
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttca 230  Q
    ||||||| |||||||||| | ||||||||||||||| | | |||  ||||||||||||||||||||||||||| ||||||||    
T  3604761 aaaataactgagtcatttcacttttcaatacaatattaattatt--tttttccctttataactctaattaatattactttca 3604682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 232
Target Start/End: Complemental strand, 30064110 - 30064029
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattacttttt-ccctttataactctaattaatactactttcatc 232  Q
    ||||||| |||||||||| | ||| |||||||||||   |||||||||||| |||||||||||||||||||||| ||||||||||    
T  30064110 aaaataactgagtcatttcactttccaatacaatat---taattacttttttccctttataactctaattaatattactttcatc 30064029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 15081390 - 15081449
Alignment:
Q  170 ttttcaatacaatatcattaattactttt-tccctttataactctaattaatactactttcat 231  Q
    |||||||||||||||   ||||||||||| |||||||||||||||||||||||||||||||||    
T  15081390 ttttcaatacaatat---taattacttttttccctttataactctaattaatactactttcat 15081449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 4238368 - 4238444
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactt 227  Q
    ||||||| ||||||||||||| |||||||||||||| | | |||  |||||| |||||||||| |||||||||||||||    
T  4238368 aaaataattgagtcattttatctttcaatacaatattaattatt--tttttctctttataactttaattaatactactt 4238444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 33109318 - 33109400
Alignment:
Q  148 caaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttcatc 232  Q
    ||||| || |||| ||||||| ||||||||||||||  | | |||  ||||||| ||||||||||||||||||||||||||||||    
T  33109318 caaaacaactgagccattttacttttcaatacaatactaattatt--tttttccatttataactctaattaatactactttcatc 33109400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 232
Target Start/End: Complemental strand, 7301232 - 7301160
Alignment:
Q  158 gagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttcatc 232  Q
    ||||||||| | ||||||||||||||| | | |||  ||||||||||||||||||||| ||||| ||||||||||    
T  7301232 gagtcatttcacttttcaatacaatattaattatt--tttttccctttataactctaactaatattactttcatc 7301160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 26356250 - 26356296
Alignment:
Q  186 attaattactttttccctttataactctaattaatactactttcatc 232  Q
    ||||||||||||||| | |||||||| ||||||||||||||||||||    
T  26356250 attaattactttttctcattataactttaattaatactactttcatc 26356296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 9755286 - 9755227
Alignment:
Q  170 ttttcaatacaatatcattaattactttttccctttataactctaattaatactactttcatc 232  Q
    |||||||||||||||   |||||||||||| ||||||||||| ||||||||| || |||||||    
T  9755286 ttttcaatacaatat---taattacttttttcctttataactgtaattaatattattttcatc 9755227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 34441859 - 34441918
Alignment:
Q  170 ttttcaatacaatatcattaattactttttccctttataactctaattaatactactttcatc 232  Q
    ||||||||||||   ||||||||||||||| |  |||||||| ||||||||||||||||||||    
T  34441859 ttttcaatacaa---cattaattacttttttcaattataactttaattaatactactttcatc 34441918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 3166248 - 3166190
Alignment:
Q  170 ttttcaatacaatatcattaattactttttccct-ttataactctaattaatactactttca 230  Q
    ||||||||||||   ||||||||||||||| ||  |||||||||||||||||||||||||||    
T  3166248 ttttcaatacaa---cattaattacttttttccaattataactctaattaatactactttca 3166190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 34916023 - 34915991
Alignment:
Q  95 tactccctccgtcccataataactgaatcattt 127  Q
    |||||||||||||||||||||||||| ||||||    
T  34916023 tactccctccgtcccataataactgagtcattt 34915991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 148 - 232
Target Start/End: Complemental strand, 9711 - 9629
Alignment:
Q  148 caaaataaatgagtcattttatttttcaatacaatatcattaattact-ttttccctttataactctaattaatactactttcatc 232  Q
    ||||||||  |||| |||| | |||||||||||||||   |||||||| |||||||||||||||||||||||||||||||||||||    
T  9711 caaaataacagagtaatttcacttttcaatacaatat---taattactattttccctttataactctaattaatactactttcatc 9629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 147 - 230
Target Start/End: Original strand, 230201 - 230281
Alignment:
Q  147 tcaaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttca 230  Q
    ||||||||| |||||||||| | |||||||||||||||   |||||| ||||| | ||||||||||||||||||| ||||||||    
T  230201 tcaaaataactgagtcatttcacttttcaatacaatat---taattatttttttcttttataactctaattaatattactttca 230281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 230
Target Start/End: Original strand, 5765 - 5843
Alignment:
Q  149 aaaataaatgagtcattttatttttcaatacaatatcattaattactttttccctttataactctaattaatactactttca 230  Q
    ||||||| ||| | |||||||||||||||| |||||   |||||| ||||||| ||||||||| ||||||||||||||||||    
T  5765 aaaataattgaattattttatttttcaataaaatat---taattattttttccatttataactttaattaatactactttca 5843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 98806 - 98852
Alignment:
Q  186 attaattactttttccctttataactctaattaatactactttcatc 232  Q
    |||||||||||||||||||||||||||||||||||| || |||||||    
T  98806 attaattactttttccctttataactctaattaatattattttcatc 98852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 14436 - 14483
Alignment:
Q  186 attaattactttttcccttt-ataactctaattaatactactttcatc 232  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||    
T  14436 attaattacttttttccttttataactctaattaatactactttcatc 14483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 26553 - 26640
Alignment:
Q  148 caaaataaatgagtcattttatttttcaatacaatatca----ttaattactttttccctttataactctaattaatactactttcatc 232  Q
    ||||||||||||||||||| | |||||||||||  ||||    || |||| ||||||| ||||||| ||||||||||||||||||||||    
T  26553 caaaataaatgagtcatttcacttttcaatacatcatcaactttttatta-tttttccatttataattctaattaatactactttcatc 26640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 229791 - 229848
Alignment:
Q  171 tttcaatacaatatcattaattactttttccc-tttataactctaattaatactactttca 230  Q
    ||||||||||||||   |||||| |||||||| ||||||||||||||||||||||||||||    
T  229791 tttcaatacaatat---taattattttttcccctttataactctaattaatactactttca 229848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 127
Target Start/End: Complemental strand, 98868 - 98835
Alignment:
Q  94 atactccctccgtcccataataactgaatcattt 127  Q
    |||||| |||||||||||||||||||||||||||    
T  98868 atactcactccgtcccataataactgaatcattt 98835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 127
Target Start/End: Complemental strand, 108146 - 108113
Alignment:
Q  94 atactccctccgtcccataataactgaatcattt 127  Q
    |||||| |||||||||||||||||||||||||||    
T  108146 atactcactccgtcccataataactgaatcattt 108113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 8094 - 8036
Alignment:
Q  170 ttttcaatacaatatcattaattactttttccct-ttataactctaattaatactactttca 230  Q
    |||||||||||||||||   |||||||||||||  |||||||| ||||||||||||||||||    
T  8094 ttttcaatacaatatca---attactttttcccaattataactttaattaatactactttca 8036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 232
Target Start/End: Original strand, 4028 - 4056
Alignment:
Q  204 ttataactctaattaatactactttcatc 232  Q
    |||||||||||||||||||||||||||||    
T  4028 ttataactctaattaatactactttcatc 4056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 8878 - 8914
Alignment:
Q  196 ttttccctttataactctaattaatactactttcatc 232  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  8878 tttttcctttataactctaattaatattactttcatc 8914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University