View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21040_high_3 (Length: 588)
Name: NF21040_high_3
Description: NF21040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21040_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 39 - 489
Target Start/End: Original strand, 6547890 - 6548340
Alignment:
| Q |
39 |
agtcctgtaaatgcagctcaattaacaactctatagacattaaaatgtaaggtttgagtttgaacatcagattctccacttctcagcatttacagtgtgt |
138 |
Q |
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| T |
6547890 |
agtcctataaatgcagctcagttagcagctctatagacattaaaatgtaggatttgagttcgaacatcagattctctacttctcagcacttatagtatgt |
6547989 |
T |
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| Q |
139 |
gaatctagttactagactattaaaagaagaaaaaacctttgatggaatcatttaaagcaagtaaacattgatacaaaattcatctagtaatctccctatg |
238 |
Q |
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| T |
6547990 |
gaatctagttactagactattagaataagaaaaaacctttgatggaatcatttaaagcaagtaaacattgatacaaaattcatctagtaatctccctatg |
6548089 |
T |
|
| Q |
239 |
tcaaatgtgatcttaattgtatgtttaaatagtctaatcacattttagatgaaggtttcatatttggattagaatcatattcagtgattaacatttaaac |
338 |
Q |
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| T |
6548090 |
tcaaatgtgatcttaattgtatgtttaaatagtttaatcacattttagatgaaggtttcatatttggattagaatcatattcagtgattaacatttaaac |
6548189 |
T |
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| Q |
339 |
taacttgtctgtctggtggggcactcaaagtgttcgatgacagccagaaatgtccaaagcttggtgggtaagacatcggttttatataaatacaattttt |
438 |
Q |
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| T |
6548190 |
taacttgtctgtctggtggggcactcaaagtgttcgatgacagccagaaatgtccaaagcttggtgggtaagacatcggttttatataaatacaattttt |
6548289 |
T |
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| Q |
439 |
taaagataagatcataagagcaatctaatggaagcttgaacttaagcttca |
489 |
Q |
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| T |
6548290 |
taaagataagatcataagagcaatctaatggaagcttgaacttaagcttca |
6548340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 539 - 572
Target Start/End: Original strand, 6548390 - 6548423
Alignment:
| Q |
539 |
gagtacagttggccacactactaccagttaatat |
572 |
Q |
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| T |
6548390 |
gagtacagttggccacactactaccagttaatat |
6548423 |
T |
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