View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21040_high_7 (Length: 434)
Name: NF21040_high_7
Description: NF21040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21040_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 391
Target Start/End: Complemental strand, 4846145 - 4845769
Alignment:
| Q |
19 |
gaaccgtggtcatgaatttactaatcatttcgacaaatagttaatatgtagctatgttcaatttgttaataatgttctttatcttctcat---attcata |
115 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
4846145 |
gaaccatggtcatgaatttactaatcatttcgacaaatagttaatacgtagctatgttcaatttgctaataatgttctttatcttctcatcatattcata |
4846046 |
T |
|
| Q |
116 |
ttccacttgagtcttcttgctctttcttttacaatctctactaccattcctattattgtttatcnnnnnnnnnacatctcagttatttttt-cctttctc |
214 |
Q |
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||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||| |||||||| |
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| T |
4846045 |
ttccacttgagtcttcttgctcttttttttacaatctttactaccattcttattattgtttatcttttttttgacatctcagttatttttttcctttctc |
4845946 |
T |
|
| Q |
215 |
gaggggttattcaattggcaatgtggaaattatataaccaaaaccatcaaatgggagatatgattgtgtaatagtggaaacagaacttttcataatttaa |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
4845945 |
gaggggttattcaattggcaatgtggaaattatataaccaaaaccatcaaatgggagatatgattgtgtaatagtggaaactgaacttttcatactttaa |
4845846 |
T |
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| Q |
315 |
tggctaggacatatcacatgttttcatatgtctgttttgaaacgttgttttatcccccatgactttggcttattgtc |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4845845 |
tggctaggacatatcacatgttttcatatgtctgttttggaacgttgttttatcccccatgactttggcttattgtc |
4845769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 151; Significance: 9e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 4080559 - 4080776
Alignment:
| Q |
19 |
gaaccgtggtcatgaatttactaatcatttcgacaaatagttaatatgtagctatgttcaatttgttaataatgttctttatcttctcatattcatattc |
118 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4080559 |
gaactgtggtcatgaatttactaatcatttcgacaaatagttaatatgtagctatgttcaatttgctaataatgttctttatcttctcatattcatattc |
4080658 |
T |
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| Q |
119 |
cacttgagtcttcttgctctttcttttacaatctctactaccattcctattattgtttatcnnnnnnnnnacatctcagtta-ttttttcctttctcgag |
217 |
Q |
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| |||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
4080659 |
cgcttgagtctttttgctcttttttttacaatttctactaccattcctattattgtttatc-tttttttgacatctcagttatttttttcctttctcgag |
4080757 |
T |
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| Q |
218 |
gggttattcaattggcaat |
236 |
Q |
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|||||||| |||||||||| |
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| T |
4080758 |
gggttattaaattggcaat |
4080776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 26122805 - 26122882
Alignment:
| Q |
23 |
cgtggtcatgaatttactaatcatttcgacaaatagttaatatgtagctatgttcaatttgttaataatgttctttatctt |
103 |
Q |
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|||| ||||||||||||||| ||||| | ||| ||||||||||| ||||| ||||||| ||||||| ||||||||||| |
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| T |
26122805 |
cgtgttcatgaatttactaaccattttggaaaa---ttaatatgtagatatgtacaatttgctaataatattctttatctt |
26122882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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